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Research Output

2020

Hypothalamic transcriptome of tame and aggressive silver foxes (Vulpes vulpes) identifies gene expression differences shared across brain regions

Rosenfeld, C. S., Hekman, J. P., Johnson, J. L., Lyu, Z., Ortega, M. T., Joshi, T., Mao, J., Vladimirova, A. V., Gulevich, R. G., Kharlamova, A. V., Acland, G. M., Hecht, E. E., Wang, X., Clark, A. G., Trut, L. N., Behura, S. K. & Kukekova, A. V., Jan 1 2020, In : Genes, Brain and Behavior. 19, 1, e12614.

Research output: Contribution to journalArticle

2019

Evolution of gene regulation in ruminants differs between evolutionary breakpoint regions and homologous synteny blocks

Farré, M., Kim, J., Proskuryakova, A. A., Zhang, Y., Kulemzina, A. I., Li, Q., Zhou, Y., Xiong, Y., Johnson, J. L., Perelman, P. L., Johnson, W. E., Warren, W. C., Kukekova, A. V., Zhang, G., O’Brien, S. J., Ryder, O. A., Graphodatsky, A. S., Ma, J., Lewin, H. A. & Larkin, D. M., Apr 2019, In : Genome Research. 29, 4, p. 576-589 14 p.

Research output: Contribution to journalArticle

Open Access

Four structural variants associated with human-directed sociability in dogs are not found in tame red foxes (Vulpes vulpes)

Bastounes, E. R., Rando, H. M., Johnson, J. L., Trut, L. N., Sacks, B. N., Driscoll, C. A., vonHoldt, B. & Kukekova, A. V., Feb 1 2019, In : Animal genetics. 50, 1, p. 116-118 3 p.

Research output: Contribution to journalComment/debate

The Red Fox Y-Chromosome in Comparative Context

Rando, H. M., Wadlington, W. H., Johnson, J. L., Stutchman, J. T., Trut, L. N., Farré, M. & Kukekova, A. V., May 28 2019, In : Genes. 10, 6, 409.

Research output: Contribution to journalArticle

Open Access
2018

Anterior pituitary transcriptome suggests differences in ACTH release in tame and aggressive foxes

Hekman, J. P., Johnson, J. L., Edwards, W., Vladimirova, A. V., Gulevich, R. G., Ford, A. L., Kharlamova, A. V., Herbeck, Y., Acland, G. M., Raetzman, L. T., Trut, L. N. & Kukekova, A. V., Mar 1 2018, In : G3: Genes, Genomes, Genetics. 8, 3, p. 859-873 15 p.

Research output: Contribution to journalArticle

Construction of red fox chromosomal fragments from the short-read genome assembly

Rando, H. M., Farré, M., Robson, M. P., Won, N. B., Johnson, J. L., Buch, R., Bastounes, E. R., Xiang, X., Feng, S., Liu, S., Xiong, Z., Kim, J., Zhang, G., Trut, L. N., Larkin, D. M. & Kukekova, A. V., Jun 20 2018, In : Genes. 9, 6, 308.

Research output: Contribution to journalArticle

Development of a genotype-by-sequencing immunogenetic assay as exemplified by screening for variation in red fox with and without endemic rabies exposure

Donaldson, M. E., Rico, Y., Hueffer, K., Rando, H. M., Kukekova, A. V. & Kyle, C. J., Jan 2018, In : Ecology and Evolution. 8, 1, p. 572-583 12 p.

Research output: Contribution to journalArticle

Genomic responses to selection for tame/aggressive behaviors in the silver fox (Vulpes vulpes)

Wang, X., Pipes, L., Trut, L. N., Herbeck, Y., Vladimirova, A. V., Gulevich, R. G., Kharlamova, A. V., Johnson, J. L., Acland, G. M., Kukekova, A. V. & Clark, A. G., Oct 9 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 41, p. 10398-10403 6 p.

Research output: Contribution to journalArticle

Red fox genome assembly identifies genomic regions associated with tame and aggressive behaviours

Kukekova, A. V., Johnson, J. L., Xiang, X., Feng, S., Liu, S., Rando, H. M., Kharlamova, A. V., Herbeck, Y., Serdyukova, N. A., Xiong, Z., Beklemischeva, V., Koepfli, K. P., Gulevich, R. G., Vladimirova, A. V., Hekman, J. P., Perelman, P. L., Graphodatsky, A. S., O’Brien, S. J., Wang, X., Clark, A. G. & 3 others, Acland, G. M., Trut, L. N. & Zhang, G., Sep 1 2018, In : Nature Ecology and Evolution. 2, 9, p. 1479-1491 13 p.

Research output: Contribution to journalArticle

Sequencing of supernumerary chromosomes of red fox and raccoon dog confirms a non-random gene acquisition by B chromosomes

Makunin, A. I., Romanenko, S. A., Beklemisheva, V. R., Perelman, P. L., Druzhkova, A. S., Petrova, K. O., Prokopov, D. Y., Chernyaeva, E. N., Johnson, J. L., Kukekova, A. V., Yang, F., Ferguson-Smith, M. A., Graphodatsky, A. S. & Trifonov, V. A., Aug 10 2018, In : Genes. 9, 8, 405.

Research output: Contribution to journalArticle

2017

Genetics of Interactive Behavior in Silver Foxes (Vulpes vulpes)

Nelson, R. M., Temnykh, S. V., Johnson, J. L., Kharlamova, A. V., Vladimirova, A. V., Gulevich, R. G., Shepeleva, D. V., Oskina, I. N., Acland, G. M., Rönnegård, L., Trut, L. N., Carlborg, Ö. & Kukekova, A. V., Jan 1 2017, In : Behavior genetics. 47, 1, p. 88-101 14 p.

Research output: Contribution to journalArticle

X chromosome evolution in cetartiodactyla

Proskuryakova, A. A., Kulemzina, A. I., Perelman, P. L., Makunin, A. I., Larkin, D. M., Farré, M., Kukekova, A. V., Lynn Johnson, J., Lemskaya, N. A., Beklemisheva, V. R., Roelke-Parker, M. E., Bellizzi, J., Ryder, O. A., O’Brien, S. J. & Graphodatsky, A. S., Sep 2017, In : Genes. 8, 9, 2016.

Research output: Contribution to journalArticle

Y-Chromosome markers for the red fox

Rando, H. M., Stutchman, J. T., Bastounes, E. R., Johnson, J. L., Driscoll, C. A., Barr, C. S., Trut, L. N., Sacks, B. N. & Kukekova, A. V., Jan 1 2017, In : Journal of Heredity. 108, 6, p. 678-685 8 p.

Research output: Contribution to journalArticle

2016

Georgian white coat color of red fox (Vulpes vulpes) maps to fox chromosome 2 in the region containing KIT gene

Kukekova, A. V., Johnson, J. L., Kharlamova, A. V., Vladimirova, A. V., Shepeleva, D. V., Gulevich, R. G. & Trut, L. N., Aug 1 2016, In : Animal genetics. 47, 4, p. 514-515 2 p.

Research output: Contribution to journalArticle

2015

Genotyping-by-sequencing (GBS) detects genetic structure and confirms behavioral QTL in tame and aggressive foxes (Vulpes vulpes)

Johnson, J. L., Wittgenstein, H., Mitchell, S. E., Hyma, K. E., Temnykh, S. V., Kharlamova, A. V., Gulevich, R. G., Vladimirova, A. V., Fong, H. W. F., Acland, G. M., Trut, L. N. & Kukekova, A. V., Jun 10 2015, In : PloS one. 10, 6, e0127013.

Research output: Contribution to journalArticle

Platinum coat color in red fox (Vulpes vulpes) is caused by a mutation in an autosomal copy of KIT

Johnson, J. L., Kozysa, A., Kharlamova, A. V., Gulevich, R. G., Perelman, P. L., Fong, H. W. F., Vladimirova, A. V., Oskina, I. N., Trut, L. N. & Kukekova, A. V., Apr 1 2015, In : Animal genetics. 46, 2, p. 190-199 10 p.

Research output: Contribution to journalArticle

Transcriptome Analysis in Domesticated Species: Challenges and Strategies

Hekman, J. P., Johnson, J. L. & Kukekova, A. V., Jan 1 2015, In : Bioinformatics and Biology Insights. 9S4, p. 21-31 11 p.

Research output: Contribution to journalReview article

2014

Genes on B chromosomes of vertebrates

Makunin, A. I., Dementyeva, P. V., Graphodatsky, A. S., Volobouev, V. T., Kukekova, A. V. & Trifonov, V. A., Jan 1 2014, In : Molecular Cytogenetics. 7, 1, 99.

Research output: Contribution to journalReview article

Genetics of Domesticated Behavior in Dogs and Foxes

Kukekova, A. V., Trut, L. N. & Acland, G. M., Jan 1 2014, Genetics and the Behavior of Domestic Animals. Elsevier Inc., p. 361-396 36 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2013

Fox domestication: Molecular mechanisms involved in selection for behavior

Trut, L. N., Herbeck, Y. E., Kharlamova, A. V., Gulevich, R. G. & Kukekova, A. V., Dec 31 2013, In : Russian Journal of Genetics: Applied Research. 3, 6, p. 419-425 7 p.

Research output: Contribution to journalArticle

Genomic deletion of CNGB3 is identical by descent in multiple canine breeds and causes achromatopsia

Yeh, C. Y., Goldstein, O., Kukekova, A. V., Holley, D., Knollinger, A. M., Huson, H. J., Pearce-Kelling, S. E., Acland, G. M. & Komáromy, A. M., Apr 20 2013, In : BMC genetics. 14, 27.

Research output: Contribution to journalArticle

2012

Genetics of behavior in the silver fox

Kukekova, A. V., Temnykh, S. V., Johnson, J. L., Trut, L. N. & Acland, G. M., Feb 1 2012, In : Mammalian Genome. 23, 1-2, p. 164-177 14 p.

Research output: Contribution to journalArticle

2011

Mapping loci for fox domestication: Deconstruction/Reconstruction of a behavioral phenotype

Kukekova, A. V., Trut, L. N., Chase, K., Kharlamova, A. V., Johnson, J. L., Temnykh, S. V., Oskina, I. N., Gulevich, R. G., Vladimirova, A. V., Klebanov, S., Shepeleva, D. V., Shikhevich, S. G., Acland, G. M. & Lark, K. G., Jul 1 2011, In : Behavior genetics. 41, 4, p. 593-606 14 p.

Research output: Contribution to journalArticle

On the origin of a domesticated species: Identifying the parent population of Russian silver foxes (Vulpes vulpes)

Statham, M. J., Trut, L. N., Sacks, B. N., Kharlamova, A. V., Oskina, I. N., Gulevich, R. G., Johnson, J. L., Temnykh, S. V., Acland, G. M. & Kukekova, A. V., May 1 2011, In : Biological Journal of the Linnean Society. 103, 1, p. 168-175 8 p.

Research output: Contribution to journalArticle

Sequence comparison of prefrontal cortical brain transcriptome from a tame and an aggressive silver fox (Vulpes vulpes)

Kukekova, A. V., Johnson, J. L., Teiling, C., Li, L., Oskina, I. N., Kharlamova, A. V., Gulevich, R. G., Padte, R., Dubreuil, M. M., Vladimirova, A. V., Shepeleva, D. V., Shikhevich, S. G., Sun, Q., Ponnala, L., Temnykh, S. V., Trut, L. N. & Acland, G. M., Oct 3 2011, In : BMC genomics. 12, 482.

Research output: Contribution to journalArticle

2010

COL9A2 and COL9A3 mutations in canine autosomal recessive oculoskeletal dysplasia

Goldstein, O., Guyon, R., Kukekova, A., Kuznetsova, T. N., Pearce-Kelling, S. E., Johnson, J., Aguirre, G. D. & Acland, G. M., Aug 1 2010, In : Mammalian Genome. 21, 7-8, p. 398-408 11 p.

Research output: Contribution to journalArticle

Directional asymmetry in the limbs, skull and pelvis of the silver fox (V. vulpes)

Kharlamova, A. V., Trut, L. N., Chase, K., Kukekova, A. V. & Lark, K. G., Dec 1 2010, In : Journal of Morphology. 271, 12, p. 1501-1508 8 p.

Research output: Contribution to journalArticle

Exonic SINE insertion in STK38L causes canine early retinal degeneration (erd)

Goldstein, O., Kukekova, A. V., Aguirre, G. D. & Acland, G. M., Dec 2010, In : Genomics. 96, 6, p. 362-368 7 p.

Research output: Contribution to journalArticle

2009

Canine RD3 mutation establishes rod-cone dysplasia type 2 (rcd2) as ortholog of human and murine rd3

Kukekova, A. V., Goldstein, O., Johnson, J. L., Richardson, M. A., Pearce-Kelling, S. E., Swaroop, A., Friedman, J. S., Aguirre, G. D. & Acland, G. M., Feb 2009, In : Mammalian Genome. 20, 2, p. 109-123 15 p.

Research output: Contribution to journalArticle

Chromosomal mapping of canine-derived BAC clones to the red fox and american mink genomes

Kukekova, A. V., Vorobieva, N. V., Beklemisheva, V. R., Johnson, J. L., Temnykh, S. V., Yudkin, D. V., Trut, L. N., Andre, C., Galibert, F., Aguirre, G. D., Acland, G. M. & Graphodatsky, A. S., 2009, In : Journal of Heredity. 100, p. S42-S53

Research output: Contribution to journalConference article

2008

Measurement of segregating behaviors in experimental silver fox pedigrees

Kukekova, A. V., Trut, L. N., Chase, K., Shepeleva, D. V., Vladimirova, A. V., Kharlamova, A. V., Oskina, I. N., Stepika, A., Klebanov, S., Erb, H. N. & Acland, G. M., Mar 1 2008, In : Behavior genetics. 38, 2, p. 185-194 10 p.

Research output: Contribution to journalArticle

2007

A meiotic linkage map of the silver fox, aligned and compared to the canine genome

Kukekova, A. V., Trut, L. N., Oskina, I. N., Johnson, J. L., Temnykh, S. V., Kharlamova, A. V., Shepeleva, D. V., Gulievich, R. G., Shikhevich, S. G., Graphodatsky, A. S., Aguirre, G. D. & Acland, G. M., Mar 2007, In : Genome Research. 17, 3, p. 387-399 13 p.

Research output: Contribution to journalArticle

Breed relationships facilitate fine-mapping studies: A 7.8-kb deletion cosegregates with Collie eye anomaly across multiple dog breeds

Parker, H. G., Kukekova, A. V., Akey, D. T., Goldstein, O., Kirkness, E. F., Baysac, K. C., Mosher, D. S., Aguirre, G. D., Acland, G. M. & Ostrander, E. A., Nov 2007, In : Genome Research. 17, 11, p. 1562-1571 10 p.

Research output: Contribution to journalArticle

Mapping of KIT adjacent sequences on canid autosomes and B chromosomes

Yudkin, D. V., Trifonov, V. A., Kukekova, A. V., Vorobieva, N. V., Rubtsova, N. V., Yang, F., Acland, G. M., Ferguson-Smith, M. A. & Graphodatsky, A. S., Jan 1 2007, In : Cytogenetic and Genome Research. 116, 1-2, p. 100-103 4 p.

Research output: Contribution to journalArticle

2006

Linkage mapping of canine rod cone dysplasia type 2 (rcd2) to CFA7, the canine orthologue of human 1q32

Kukekova, A. V., Nelson, J., Kuchtey, R. W., Lowe, J. K., Johnson, J. L., Ostrander, E. A., Aguirre, G. D. & Acland, G. M., Mar 1 2006, In : Investigative Ophthalmology and Visual Science. 47, 3, p. 1210-1215 6 p.

Research output: Contribution to journalArticle

2005

The proto-oncogene C-KIT maps to canid B-chromosomes

Graphodatsky, A. S., Kukekova, A. V., Yudkin, D. V., Trifonov, V. A., Vorobieva, N. V., Beklemisheva, V. R., Perelman, P. L., Graphodatskaya, D. A., Trut, L. N., Yang, F., Ferguson-Smith, M. A., Acland, G. M. & Aguirre, G. D., Jan 1 2005, In : Chromosome Research. 13, 2, p. 113-122 10 p.

Research output: Contribution to journalArticle

2004

A marker set for construction of a genetic map of the silver fox (Vulpes vulpes)

Kukekova, A. V., Trut, L. N., Oskina, I. N., Kharlamova, A. V., Shikhevich, S. G., Kirkness, E. F., Aguirre, G. D. & Acland, G. M., May 1 2004, In : Journal of Heredity. 95, 3, p. 185-194 10 p.

Research output: Contribution to journalArticle

2003

Cloning and characterization of canine SHARP1 and its evaluation as a positional candidate for canine early retinal degeneration (erd)

Kukekova, A. V., Aguirre, G. D. & Acland, G. M., Jul 17 2003, In : Gene. 312, 1-2, p. 335-343 9 p.

Research output: Contribution to journalArticle

Linkage mapping of the primary disease locus for collie eye anomaly

Lowe, J. K., Kukekova, A. V., Kirkness, E. F., Langlois, M. C., Aguirre, G. D., Acland, G. M. & Ostrander, E. A., Jul 1 2003, In : Genomics. 82, 1, p. 86-95 10 p.

Research output: Contribution to journalArticle

2000

Bacterial cell division proteins and genes

Kukekova, A. V. & Borkhsenius, S. N., Dec 1 2000, In : Tsitologiya. 42, 6, p. 526-529 4 p.

Research output: Contribution to journalArticle

Geny i belki deleniia bakterial'nykh kletok.

Translated title of the contribution: Cell division genes and proteins in bacterial cellsKukekova, A. V. & Borkhenius, S. N., 2000, In : Tsitologiia. 42, 6, p. 519-529 11 p.

Research output: Contribution to journalReview article

1999

Characterization of Acholeplasma laidlawii ftsZ gene and its gene product

Kukekova, A. V., Malinin, A. Y., Ayala, J. A. & Borchsenius, S. N., Aug 19 1999, In : Biochemical and Biophysical Research Communications. 262, 1, p. 44-49 6 p.

Research output: Contribution to journalArticle

Cloning and Expression of the Gene for Mycoplasma Key Cell-Division Protein FtsZ in Escherichia coli

Kukekova, A. V., Malinin, A. Y., Vonski, M. S. & Borkhsenius, S. N., 1999, In : Russian Journal of Genetics. 35, 3, p. 249-255 7 p.

Research output: Contribution to journalArticle

Klonirovanie i ekspressiia gena kliuchevogo belka deleniia FtsZ mikoplazmy v Escherichia coli.

Translated title of the contribution: Cloning and expression of the gene for the mycoplasma key division protein FtsZ in Escherichia coliKukekova, A. V., Malinin, A. I., Vonskii, M. A. & Borkhsenius, S. N., Mar 1 1999, In : Genetika. 35, 2, p. 314-321 8 p.

Research output: Contribution to journalArticle