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Research Output 2006 2019

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Article
2019

Directions for research and training in plant omics: Big Questions and Big Data

Argueso, C. T., Assmann, S. M., Birnbaum, K. D., Chen, S., Dinneny, J. R., Doherty, C. J., Eveland, A. L., Friesner, J., Greenlee, V. R., Law, J. A., Marshall-Colón, A., Mason, G. A., O'Lexy, R., Peck, S. C., Schmitz, R. J., Song, L., Stern, D., Varagona, M. J., Walley, J. W. & Williams, C. M., Apr 2019, In : Plant Direct. 3, 4, e00133.

Research output: Contribution to journalArticle

Open Access
training (plants)
Education
plant biology
Research
Arabidopsis

WRKY1 Mediates Transcriptional Regulation of Light and Nitrogen Signaling Pathways

Heerah, S., Katari, M., Penjor, R., Coruzzi, G. & Marshall-Colon, A., Nov 1 2019, In : Plant physiology. 181, 3, p. 1371-1388 18 p.

Research output: Contribution to journalArticle

Open Access
Nitrogen
Light
nitrogen
metabolism
Arabidopsis
2018

Temporal transcriptional logic of dynamic regulatory networks underlying nitrogen signaling and use in plants

Varala, K., Marshall-Colón, A., Cirrone, J., Brooks, M. D., Pasquino, A. V., Léran, S., Mittal, S., Rock, T. M., Edwards, M. B., Kim, G. J., Ruffel, S., Richard McCombie, W., Shasha, D. & Coruzzi, G. M., Jun 19 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 25, p. 6494-6499 6 p.

Research output: Contribution to journalArticle

Nitrogen
Gene Regulatory Networks
Transcription Factors
Genes
Genome
Food Supply
Technology
Agriculture
Climate
Research Personnel
2017

Crops in silico: Generating virtual crops using an integrative and multi-scale modeling platform

Marshall-Colon, A., Long, S. P., Allen, D. K., Allen, G. D., Beard, D. A., Benes, B., Von Caemmerer, S., Christensen, A. J., Cox, D. J., Hart, J. C., Hirst, P. M., Kannan, K., Katz, D. S., Lynch, J. P., Millar, A. J., Panneerselvam, B., Price, N. D., Prusinkiewicz, P., Raila, D., Shekar, R. G. & 9 others, Shrivastava, S., Shukla, D., Srinivasan, V., Stitt, M., Turk, M. J., Voit, E. O., Wang, Y., Yin, X. & Zhu, X. G., May 15 2017, In : Frontiers in Plant Science. 8, 786.

Research output: Contribution to journalArticle

crops
engineering
ecosystems
plant biology
climate models

Tyrosine-610 in the receptor kinase BAK1 does not play a major role in brassinosteroid signaling or innate immunity

Singh, V., Perraki, A., Kim, S. Y., Shrivastava, S., Lee, J. H., Zhao, Y., Schwessinger, B., Oh, M. H., Marshall-Colon, A., Zipfel, C. & Huber, S. C., Aug 2 2017, In : Frontiers in Plant Science. 8, 1273.

Research output: Contribution to journalArticle

brassinosteroids
tyrosine
phosphotransferases (kinases)
receptors
flagellin
2015

AtNIGT1/HRS1 integrates nitrate and phosphate signals at the Arabidopsis root tip

Medici, A., Marshall-Colon, A., Ronzier, E., Szponarski, W., Wang, R., Gojon, A., Crawford, N. M., Ruffel, S., Coruzzi, G. M. & Krouk, G., Feb 27 2015, In : Nature communications. 6, 6274.

Research output: Contribution to journalArticle

Meristem
Arabidopsis
Nitrates
Global Atmospheric Research Program
nitrates

Hit-and-Run leaves its mark: Catalyst transcription factors and chromatin modification

Varala, K., Li, Y., Marshall-Colón, A., Para, A. & Coruzzi, G. M., Aug 1 2015, In : BioEssays. 37, 8, p. 851-856 6 p.

Research output: Contribution to journalArticle

Chromatin
Transcription Factors
Catalysts
Genes
Transcription
2014

Hit-and-run transcriptional control by bZIP1 mediates rapid nutrient signaling in Arabidopsis

Para, A., Li, Y., Marshall-Coloń, A., Varala, K., Francoeur, N. J., Moran, T. M., Edwards, M. B., Hackley, C., Bargmann, B. O. R., Birnbaum, K. D., Richard McCombie, W., Krouk, G. & Coruzzi, G. M., Jul 15 2014, In : Proceedings of the National Academy of Sciences of the United States of America. 111, 28, p. 10371-10376 6 p.

Research output: Contribution to journalArticle

Leucine Zippers
Arabidopsis
Transcription Factors
Food
Gene Regulatory Networks
2013

Gene regulatory networks in plants: Learning causality from time and perturbation

Krouk, G., Lingeman, J., Marshall-Colon, A., Coruzzi, G. & Shasha, D., Jun 27 2013, In : Genome biology. 14, 6, 123.

Research output: Contribution to journalArticle

Systems Biology
Gene Regulatory Networks
Causality
learning
perturbation
2010

A kinetic model describes metabolic response to perturbations and distribution of flux control in the benzenoid network of Petunia hybrida

Colón, A. M., Sengupta, N., Rhodes, D., Dudareva, N. & Morgan, J., Apr 1 2010, In : Plant Journal. 62, 1, p. 64-76 13 p.

Research output: Contribution to journalArticle

Petunia
Petunia hybrida
Phenylalanine
kinetics
phenylalanine
2006

Reduction of benzenoid synthesis in petunia flowers reveals multiple pathways to benzoic acid and enhancement in auxin transport

Orlova, I., Marshall-Colón, A., Schnepp, J., Wood, B., Varbanova, M., Fridman, E., Blakeslee, J. J., Peer, W. A., Murphy, A. S., Rhodes, D., Pichersky, E. & Dudareva, N., Dec 1 2006, In : Plant Cell. 18, 12, p. 3458-3475 18 p.

Research output: Contribution to journalArticle

Petunia
Indoleacetic Acids
Benzoic Acid
benzoic acid
auxins