Research Output

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Conference contribution
2020

Polynomial-time statistical estimation of species trees under gene duplication and loss

Legried, B., Molloy, E. K., Warnow, T. & Roch, S., 2020, Research in Computational Molecular Biology - 24th Annual International Conference, RECOMB 2020, Proceedings. Schwartz, R. (ed.). Springer, p. 120-135 16 p. (Lecture Notes in Computer Science; vol. 12074 LNBI).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2019

New Divide-and-Conquer Techniques for Large-Scale Phylogenetic Estimation

Warnow, T., Jan 1 2019, Algorithms for Computational Biology - 6th International Conference, AlCoB 2019, Proceedings. Vega-Rodríguez, M. A., Holmes, I. & Martín-Vide, C. (eds.). Springer-Verlag Berlin Heidelberg, p. 3-21 19 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11488 LNBI).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Traction: Fast non-parametric improvement of estimated gene trees

Christensen, S., Molloy, E. K., Vachaspati, P. & Warnow, T., Sep 2019, 19th International Workshop on Algorithms in Bioinformatics, WABI 2019. Huber, K. T. & Gusfield, D. (eds.). Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing, 4. (Leibniz International Proceedings in Informatics, LIPIcs; vol. 143).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Using INC Within Divide-and-Conquer Phylogeny Estimation

Le, T., Sy, A., Molloy, E. K., Zhang, Q. R., Rao, S. & Warnow, T., Jan 1 2019, Algorithms for Computational Biology - 6th International Conference, AlCoB 2019, Proceedings. Martín-Vide, C., Holmes, I. & Vega-Rodríguez, M. A. (eds.). Springer-Verlag Berlin Heidelberg, p. 167-178 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11488 LNBI).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2018

Are Profile Hidden Markov Models Identifiable?

Pattabiraman, S. & Warnow, T., Aug 15 2018, ACM-BCB 2018 - Proceedings of the 2018 ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics. Association for Computing Machinery, Inc, p. 448-456 9 p. (ACM-BCB 2018 - Proceedings of the 2018 ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

New absolute fast converging phylogeny estimation methods with improved scalability and accuracy

Zhang, Q., Rao, S. & Warnow, T., Aug 1 2018, 18th International Workshop on Algorithms in Bioinformatics, WABI 2018. Parida, L. & Ukkonen, E. (eds.). Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing, 8. (Leibniz International Proceedings in Informatics, LIPIcs; vol. 113).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

NJMerge: A Generic technique for scaling phylogeny estimation methods and its application to species trees

Molloy, E. K. & Warnow, T., Jan 1 2018, Comparative Genomics - 16th International Conference, RECOMB-CG 2018, Proceedings. Ouangraoua, A. & Blanchette, M. (eds.). Springer-Verlag Berlin Heidelberg, p. 260-276 17 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11183 LNBI).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

The illusion of control: Placebo effects of control settings

Vaccaro, K., Huang, D., Eslami, M., Sandvig, C., Hamilton, K. & Karahalios, K., Apr 20 2018, CHI 2018 - Extended Abstracts of the 2018 CHI Conference on Human Factors in Computing Systems: Engage with CHI. Association for Computing Machinery, (Conference on Human Factors in Computing Systems - Proceedings; vol. 2018-April).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2017

"Be careful; Things can be worse than they appear" - Understanding biased algorithms and users' behavior around them in rating platforms

Eslami, M., Vaccaro, K., Karahalios, K. & Hamilton, K., Jan 1 2017, Proceedings of the 11th International Conference on Web and Social Media, ICWSM 2017. AAAI Press, p. 62-71 10 p. (Proceedings of the 11th International Conference on Web and Social Media, ICWSM 2017).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Enhancing searches for optimal trees using SIESTA

Vachaspati, P. & Warnow, T., Jan 1 2017, Comparative Genomics - 15th International Workshop, RECOMB CG 2017, Proceedings. Nakhleh, L. & Meidanis, J. (eds.). Springer-Verlag, p. 232-255 24 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10562 LNBI).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Gene tree parsimony for incomplete gene trees

Bayzid, M. S. & Warnow, T., Aug 1 2017, 17th International Workshop on Algorithms in Bioinformatics, WABI 2017. Reinert, K. & Schwartz, R. (eds.). Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing, 2. (Leibniz International Proceedings in Informatics, LIPIcs; vol. 88).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Optimal completion of incomplete gene trees in polynomial time using OCTAL

Christensen, S., Molloy, E. K., Vachaspati, P. & Warnow, T., Aug 1 2017, 17th International Workshop on Algorithms in Bioinformatics, WABI 2017. Reinert, K. & Schwartz, R. (eds.). Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing, 27. (Leibniz International Proceedings in Informatics, LIPIcs; vol. 88).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

The cybernetics thought collective project: Using computational methods to reveal intellectual context in archival material

Anderson, B. G., Prom, C. J., Hamilton, K., Hutchinson, J. A., Sammons, M. & Dolski, A., Jul 1 2017, Proceedings - 2017 IEEE International Conference on Big Data, Big Data 2017. Nie, J-Y., Obradovic, Z., Suzumura, T., Ghosh, R., Nambiar, R., Wang, C., Zang, H., Baeza-Yates, R., Baeza-Yates, R., Hu, X., Kepner, J., Cuzzocrea, A., Tang, J. & Toyoda, M. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 2213-2218 6 p. (Proceedings - 2017 IEEE International Conference on Big Data, Big Data 2017; vol. 2018-January).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2016

First I "like" it, then I hide it: Folk theories of social feeds

Eslami, M., Karahalios, K., Sandvig, C., Vaccaro, K., Rickman, A., Hamilton, K. & Kirlik, A., May 7 2016, CHI 2016 - Proceedings, 34th Annual CHI Conference on Human Factors in Computing Systems. Association for Computing Machinery, p. 2371-2382 12 p. (Conference on Human Factors in Computing Systems - Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2015

FeedVis: A path for exploring news feed curation algorithms

Eslami, M., Aleyasen, A., Karahalios, K. G., Hamilton, K. & Sandvig, C., Feb 28 2015, CSCW 2015 - Proceedings of the 2015 ACM International Conference on Computer-Supported Cooperative Work and Social Computing. Association for Computing Machinery, p. 65-68 4 p. (Proceedings of the ACM Conference on Computer Supported Cooperative Work, CSCW; vol. 2015-January).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

"I always assumed that I wasn't really that close to [her]": Reasoning about invisible algorithms in news feeds

Eslami, M., Rickman, A., Vaccaro, K., Aleyasen, A., Vuong, A., Karahalios, K., Hamilton, K. & Sandvig, C., Apr 18 2015, CHI 2015 - Proceedings of the 33rd Annual CHI Conference on Human Factors in Computing Systems: Crossings. Association for Computing Machinery, p. 153-162 10 p. (Conference on Human Factors in Computing Systems - Proceedings; vol. 2015-April).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Slow Media Art: Seeing Through Speed in Critiques of Modernity

Hamilton, K. & Kwastek, K., 2015, ISEA2015: Proceedings of the 21st International Symposium on Electronic Art. ISEA

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Ultra-large alignments using ensembles of hidden Markov models

Nguyen, N. P., Mirarab, S., Kumar, K. & Warnow, T., 2015, Research in Computational Molecular Biology - 19th Annual International Conference, RECOMB 2015, Proceedings. Przytycka, T. M. (ed.). Springer-Verlag Berlin Heidelberg, p. 259-260 2 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9029).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2014

A path to understanding the effects of algorithm awareness

Hamilton, K., Sandvig, C., Karahalios, K. G. & Eslami, M., Jan 1 2014, CHI EA 2014: One of a CHInd - Extended Abstracts, 32nd Annual ACM Conference on Human Factors in Computing Systems: One of a ChiNd - Extended Abstracts, 32nd Annual ACM Conference on Human Factors in Computing Systems. Association for Computing Machinery, p. 631-640 10 p. (Conference on Human Factors in Computing Systems - Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2007

HCI and new media arts: Methodology and evaluation

Adamczyk, P. D., Hamilton, K., Twidale, M. B. & Bailey, B. P., Jan 1 2007, SIGCHI Conference on Human Factors in Computing Systems 2007, CHI 2007 Extended Abstracts. Association for Computing Machinery, p. 2813-2816 4 p. (Conference on Human Factors in Computing Systems - Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Tools in support of creative collaboration

Adamczyk, P. D., Hamilton, K., Twidale, M. B. & Bailey, B. P., Dec 7 2007, Creativity and Cognition 2007, CC2007 - Seeding Creativity: Tools, Media, and Environments. p. 273-274 2 p. (Creativity and Cognition 2007, CC2007 - Seeding Creativity: Tools, Media, and Environments).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2006

Une histoire brève des intellectuels à la télévision: le cas de Michel Foucault

Chaplin, T. E., Oct 2006, Foucault Aujourd’hui: Actes des neuvièmes rencontres Ina-Sorbonne, 27 novembre 2004. Chartier, R. & Eribon, D. (eds.). Editions l'Harmattan, p. 17-28 (Les médias en actes).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2002

Estimating the deviation from a molecular clock

Nakhleh, L., Roshan, U., Vawter, L. & Warnow, T., 2002, Algorithms in Bioinformatics - 2nd International Workshop,WABI 2002, Proceedings. Guigo, R. & Gusfield, D. (eds.). Springer-Verlag Berlin Heidelberg, p. 287-299 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 2452).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2000

Modelling distributed knowledge processes in next generation multidisciplinary alliances

Kanfer, A. G., Haythornthwaite, C., Bowker, G. C., Bruce, B. C., Burbules, N. C., Porac, J. & Wade, J., Jan 1 2000, Proceedings - Academia/Industry Working Conference on Research Challenges 2000: Next Generation Enterprises: Virtual Organizations and Mobile/Pervasive Technologies, AIWORC 2000. Institute of Electrical and Electronics Engineers Inc., p. 83-91 9 p. 843277. (Proceedings - Academia/Industry Working Conference on Research Challenges 2000: Next Generation Enterprises: Virtual Organizations and Mobile/Pervasive Technologies, AIWORC 2000).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1993

Tree reconstruction from partial orders

Kannan, S. & Warnow, T., 1993, Algorithms and Data Structures - 3rd Workshop, WADS 1993, Proceedings. Dehne, F., Sack, J-R., Santoro, N. & Whitesides, S. (eds.). Springer-Verlag Berlin Heidelberg, p. 397-408 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 709 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution