Unit for Criticism and Interpretive Theory

Search results

• Ramon E. Soto-Crespo

  Soto-Crespo, R. E. (Creator), University of Illinois Urbana-Champaign, 2020

  Dataset

• INDELible simulated datesets with sequence length heterogeneity

  Warnow, T. (Creator) & Park, M. (Creator), University of Illinois Urbana-Champaign, Apr 6 2023

  DOI: 10.13012/B2IDB-0900513_V1

  Dataset

• Data from: Statistically consistent divide-and-conquer pipelines for phylogeny estimation using NJMerge

  Molloy, E. K. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, May 16 2019

  DOI: 10.13012/B2IDB-0569467_V2

  Dataset

• Data for 16S and 23S rRNA alignments

  Mirarab, S. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Sep 16 2017

  DOI: 10.13012/B2IDB-1614388_V1

  Dataset

• Data For Well-Connected Communities In Real Networks.

  Park, M. (Creator), Tabatabaee, Y. (Creator), Warnow, T. (Creator) & Chacko, G. (Creator), University of Illinois Urbana-Champaign, Mar 16 2023

  DOI: 10.13012/B2IDB-0908742_V1

  Dataset

• HIPPI Dataset

  Nguyen, N.-P. (Creator), Nute, M. (Creator), Mirarab, S. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Aug 16 2016

  DOI: 10.13012/B2IDB-6795126_V1

  Dataset

• Datasets from the study: Optimal completion of incomplete gene trees in polynomial time using OCTAL

  Christensen, S. (Creator), Molloy, E. K. (Creator), Vachaspati, P. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Jun 15 2017

  DOI: 10.13012/B2IDB-8402610_V1

  Dataset

• Data from: FastMulRFS: Statistically consistent polynomial time species tree estimation under gene duplication

  Molloy, E. K. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Nov 11 2019

  DOI: 10.13012/B2IDB-5721322_V1

  Dataset

• NJMerge: A generic technique for scaling phylogeny estimation methods and its application to species trees

  Molloy, E. K. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Jul 29 2018

  DOI: 10.13012/B2IDB-1424746_V1

  Dataset

• Data from: TreeMerge: A new method for improving the scalability of species tree estimation methods

  Molloy, E. K. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Mar 19 2019

  DOI: 10.13012/B2IDB-9570561_V1

  Dataset

• Data for SuperFine, DACTAL, and BeeTLe

  Swenson, M. S. (Creator), Suri, R. (Creator), Linder, C. R. (Creator), Warnow, T. (Creator), Nguyen, N.-P. (Creator), Mirarab, S. (Creator), Neves, D. T. (Creator), Sobral, J. L. (Creator), Pingali, K. (Creator), Nelesen, S. (Creator), Liu, K. (Creator) & Wang, L.-S. (Creator), University of Illinois Urbana-Champaign, Sep 20 2011

  DOI: 10.13012/B2IDB-2952208_V1

  Dataset

• TIPP3 Benchmark Data and Simulated Reads

  Shen, C. (Creator), Wedell, E. (Creator), Pop, M. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Jan 27 2025

  DOI: 10.13012/B2IDB-5467027_V1

  Dataset

• RNASim-VS2

  Chu, G. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Jun 7 2022

  DOI: 10.13012/B2IDB-8812049_V1

  Dataset

• Data from TRACTION: Fast non-parametric improvement of estimated gene trees

  Christensen, S. (Creator), Molloy, E. K. (Creator), Vachaspati, P. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Jul 29 2019

  DOI: 10.13012/B2IDB-1747658_V1

  Dataset

• Biological and Simulated datasets for testing the SCAMPP framework for phylogenetic placement methods

  Wedell, E. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Apr 29 2022

  DOI: 10.13012/B2IDB-9257957_V1

  Dataset

• Data from "Re-evaluating Deep Neural Networks for Phylogeny Estimation: The issue of taxon sampling"

  Zaharias, P. (Creator), Grosshauser, M. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Aug 24 2021

  DOI: 10.13012/B2IDB-8921156_V1

  Dataset

• Fragmentary Sequences for Variable-Sized RNAsim Datasets

  Warnow, T. (Creator) & Wedell, E. (Creator), University of Illinois Urbana-Champaign, Jun 16 2021

  DOI: 10.13012/B2IDB-8788479_V1

  Dataset

• Seven ROSE datasets in high and low fragmentation conditions

  Shen, C. (Creator), Park, M. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Nov 19 2021

  DOI: 10.13012/B2IDB-6128941_V1

  Dataset

• 5000-het: Dataset of Nucleotide Sequences with a Form of Evolutionary Sequence Length Heterogeneity

  Liu, B. (Creator), Shen, C. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Aug 5 2022

  DOI: 10.13012/B2IDB-3974819_V1

  Dataset

• Datasets from the study "OCTAL: Optimal Completion of Gene Trees in Polynomial Time"

  Christensen, S. (Creator), Molloy, E. K. (Creator), Vachaspati, P. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Feb 22 2018

  DOI: 10.13012/B2IDB-1616387_V1

  Dataset

• Data from: Polynomial-Time Statistical Estimation of Species Trees under Gene Duplication and Loss

  Legried, B. (Creator), Molloy, E. K. (Creator), Warnow, T. (Creator) & Roch, S. (Creator), University of Illinois Urbana-Champaign, Jan 22 2020

  DOI: 10.13012/B2IDB-2626814_V2

  Dataset

• Data from: Phylogenomic species tree estimation in the presence of incomplete lineage sorting and horizontal gene transfer

  Davidson, R. (Creator), Vachaspati, P. (Creator), Mirarab, S. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Oct 22 2023

  DOI: 10.13012/B2IDB-6670066_V1

  Dataset

• Data for Ultra-Large Alignments Using Phylogeny-Aware Profiles

  Nguyen, N.-P. (Creator), Mirarab, S. (Creator), Kumar, K. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Dec 16 2015

  DOI: 10.13012/B2IDB-3174395_V1

  Dataset

• MAGUS+eHMMs: Improved Multiple Sequence Alignment Accuracy for Fragmentary Sequences

  Shen, C. (Creator), Zaharias, P. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Jun 28 2021

  DOI: 10.13012/B2IDB-2419626_V1

  Dataset

• Data from: The Performance of Coalescent-Based Species Tree Estimation Methods under Models of Missing Data

  Nute, M. (Creator), Jed, C. (Creator), Molloy, E. K. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Sep 19 2017

  DOI: 10.13012/B2IDB-7735354_V1

  Dataset