Datasets
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Ramon E. Soto-Crespo
Soto-Crespo, R. E. (Creator), University of Illinois Urbana-Champaign, 2020
Dataset
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Data from: FastMulRFS: Statistically consistent polynomial time species tree estimation under gene duplication
Molloy, E. K. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Nov 11 2019
DOI: 10.13012/B2IDB-5721322_V1
Dataset
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PASTA For Proteins Data (BALiBASE)
Collins, K. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Apr 6 2018
DOI: 10.13012/B2IDB-4074787_V1
Dataset
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Data from: "Inferring Species Trees from Gene-Family with Duplication and Loss using Multi-Copy Gene-Family Tree Decomposition"
Willson, J. (Creator), Roddur, M. S. (Creator), Baqiao, L. (Creator), Zaharias, P. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, May 21 2021
DOI: 10.13012/B2IDB-4050038_V1
Dataset
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Biological and Simulated datasets for testing the SCAMPP framework for phylogenetic placement methods
Wedell, E. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Apr 29 2022
DOI: 10.13012/B2IDB-9257957_V1
Dataset
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5000-het: Dataset of Nucleotide Sequences with a Form of Evolutionary Sequence Length Heterogeneity
Liu, B. (Creator), Shen, C. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Aug 5 2022
DOI: 10.13012/B2IDB-3974819_V1
Dataset
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The 16S.B.ALL dataset in 100-HF condition
Shen, C. (Creator), Park, M. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Mar 25 2022
DOI: 10.13012/B2IDB-6604429_V1
Dataset
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Data from: "DISCO+QR: Rooting Species Trees in the Presence of GDL and ILS"
Willson, J. (Creator), Tabatabaee, Y. (Creator), Liu, B. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Feb 7 2023
DOI: 10.13012/B2IDB-5748609_V1
Dataset
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Datasets from the study "OCTAL: Optimal Completion of Gene Trees in Polynomial Time"
Christensen, S. (Creator), Molloy, E. K. (Creator), Vachaspati, P. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Feb 22 2018
DOI: 10.13012/B2IDB-1616387_V1
Dataset
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Data from: TreeMerge: A new method for improving the scalability of species tree estimation methods
Molloy, E. K. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Mar 19 2019
DOI: 10.13012/B2IDB-9570561_V1
Dataset
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Datasets from the study: Optimal completion of incomplete gene trees in polynomial time using OCTAL
Christensen, S. (Creator), Molloy, E. K. (Creator), Vachaspati, P. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Jun 15 2017
DOI: 10.13012/B2IDB-8402610_V1
Dataset
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Data from: Statistically consistent divide-and-conquer pipelines for phylogeny estimation using NJMerge
Molloy, E. K. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, May 16 2019
DOI: 10.13012/B2IDB-0569467_V2
Dataset
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HIPPI Dataset
Nguyen, N. (Creator), Nute, M. (Creator), Mirarab, S. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Aug 16 2016
DOI: 10.13012/B2IDB-6795126_V1
Dataset
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MAGUS+eHMMs: Improved Multiple Sequence Alignment Accuracy for Fragmentary Sequences
Shen, C. (Creator), Zaharias, P. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Jun 28 2021
DOI: 10.13012/B2IDB-2419626_V1
Dataset
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Data From: "Comparing Methods for Species Tree Estimation With Gene Duplication and Loss"
Willson, J. (Creator), Roddur, M. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Jan 23 2021
DOI: 10.13012/B2IDB-2418574_V1
Dataset
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Data from "Re-evaluating Deep Neural Networks for Phylogeny Estimation: The issue of taxon sampling"
Zaharias, P. (Creator), Grosshauser, M. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Aug 24 2021
DOI: 10.13012/B2IDB-8921156_V1
Dataset
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Datasets for SALMA: Scalable ALignment using MAFFT-add
Shen, C. (Creator), Liu, B. (Creator), Williams, K. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Aug 8 2022
DOI: 10.13012/B2IDB-2567453_V1
Dataset
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Data from Scalable Species Tree Inference with External Constraints
Liu, B. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Nov 3 2021
DOI: 10.13012/B2IDB-2566000_V1
Dataset
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RNASim-VS2
Chu, G. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Jun 7 2022
DOI: 10.13012/B2IDB-8812049_V1
Dataset
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Data from: The Performance of Coalescent-Based Species Tree Estimation Methods under Models of Missing Data
Nute, M. (Creator), Jed, C. (Creator), Molloy, E. K. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Sep 19 2017
DOI: 10.13012/B2IDB-7735354_V1
Dataset
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Using INC within Divide-and-Conquer Phylogeny Estimation - Datasets
Le, T. (Creator), Sy, A. (Creator), Molloy, E. K. (Creator), Zhang, Q. (Creator), Rao, S. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Jan 27 2019
DOI: 10.13012/B2IDB-8518809_V1
Dataset
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Disjoint Tree Mergers for Large-Scale Maximum LikelihoodTree Estimation
Park, M. (Creator), Zaharias, P. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Apr 11 2021
DOI: 10.13012/B2IDB-7008049_V1
Dataset
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Data from: Accurate Large-scale Phylogeny-Aware Alignment using BAli-Phy
Gupta, M. (Creator), Zaharias, P. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Apr 30 2021
DOI: 10.13012/B2IDB-7863273_V1
Dataset
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NJMerge: A generic technique for scaling phylogeny estimation methods and its application to species trees
Molloy, E. K. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Jul 29 2018
DOI: 10.13012/B2IDB-1424746_V1
Dataset
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Data from: Polynomial-Time Statistical Estimation of Species Trees under Gene Duplication and Loss
Legried, B. (Creator), Molloy, E. K. (Creator), Warnow, T. (Creator) & Roch, S. (Creator), University of Illinois Urbana-Champaign, Jan 22 2020
DOI: 10.13012/B2IDB-2626814_V2
Dataset