Unit for Criticism and Interpretive Theory

Search results

• Ramon E. Soto-Crespo

  Soto-Crespo, R. E. (Creator), University of Illinois Urbana-Champaign, 2020

  Dataset

• Data from: FastMulRFS: Statistically consistent polynomial time species tree estimation under gene duplication

  Molloy, E. K. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Nov 11 2019

  DOI: 10.13012/B2IDB-5721322_V1

  Dataset

• PASTA For Proteins Data (BALiBASE)

  Collins, K. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Apr 6 2018

  DOI: 10.13012/B2IDB-4074787_V1

  Dataset

• Data from: "Inferring Species Trees from Gene-Family with Duplication and Loss using Multi-Copy Gene-Family Tree Decomposition"

  Willson, J. (Creator), Roddur, M. S. (Creator), Baqiao, L. (Creator), Zaharias, P. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, May 21 2021

  DOI: 10.13012/B2IDB-4050038_V1

  Dataset

• Biological and Simulated datasets for testing the SCAMPP framework for phylogenetic placement methods

  Wedell, E. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Apr 29 2022

  DOI: 10.13012/B2IDB-9257957_V1

  Dataset

• 5000-het: Dataset of Nucleotide Sequences with a Form of Evolutionary Sequence Length Heterogeneity

  Liu, B. (Creator), Shen, C. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Aug 5 2022

  DOI: 10.13012/B2IDB-3974819_V1

  Dataset

• The 16S.B.ALL dataset in 100-HF condition

  Shen, C. (Creator), Park, M. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Mar 25 2022

  DOI: 10.13012/B2IDB-6604429_V1

  Dataset

• Data from: "DISCO+QR: Rooting Species Trees in the Presence of GDL and ILS"

  Willson, J. (Creator), Tabatabaee, Y. (Creator), Liu, B. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Feb 7 2023

  DOI: 10.13012/B2IDB-5748609_V1

  Dataset

• Datasets from the study "OCTAL: Optimal Completion of Gene Trees in Polynomial Time"

  Christensen, S. (Creator), Molloy, E. K. (Creator), Vachaspati, P. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Feb 22 2018

  DOI: 10.13012/B2IDB-1616387_V1

  Dataset

• Data from: TreeMerge: A new method for improving the scalability of species tree estimation methods

  Molloy, E. K. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Mar 19 2019

  DOI: 10.13012/B2IDB-9570561_V1

  Dataset

• Datasets from the study: Optimal completion of incomplete gene trees in polynomial time using OCTAL

  Christensen, S. (Creator), Molloy, E. K. (Creator), Vachaspati, P. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Jun 15 2017

  DOI: 10.13012/B2IDB-8402610_V1

  Dataset

• Data from: Statistically consistent divide-and-conquer pipelines for phylogeny estimation using NJMerge

  Molloy, E. K. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, May 16 2019

  DOI: 10.13012/B2IDB-0569467_V2

  Dataset

• HIPPI Dataset

  Nguyen, N. (Creator), Nute, M. (Creator), Mirarab, S. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Aug 16 2016

  DOI: 10.13012/B2IDB-6795126_V1

  Dataset

• MAGUS+eHMMs: Improved Multiple Sequence Alignment Accuracy for Fragmentary Sequences

  Shen, C. (Creator), Zaharias, P. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Jun 28 2021

  DOI: 10.13012/B2IDB-2419626_V1

  Dataset

• Data From: "Comparing Methods for Species Tree Estimation With Gene Duplication and Loss"

  Willson, J. (Creator), Roddur, M. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Jan 23 2021

  DOI: 10.13012/B2IDB-2418574_V1

  Dataset

• Data from "Re-evaluating Deep Neural Networks for Phylogeny Estimation: The issue of taxon sampling"

  Zaharias, P. (Creator), Grosshauser, M. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Aug 24 2021

  DOI: 10.13012/B2IDB-8921156_V1

  Dataset

• Datasets for SALMA: Scalable ALignment using MAFFT-add

  Shen, C. (Creator), Liu, B. (Creator), Williams, K. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Aug 8 2022

  DOI: 10.13012/B2IDB-2567453_V1

  Dataset

• Data from Scalable Species Tree Inference with External Constraints

  Liu, B. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Nov 3 2021

  DOI: 10.13012/B2IDB-2566000_V1

  Dataset

• RNASim-VS2

  Chu, G. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Jun 7 2022

  DOI: 10.13012/B2IDB-8812049_V1

  Dataset

• Data from: The Performance of Coalescent-Based Species Tree Estimation Methods under Models of Missing Data

  Nute, M. (Creator), Jed, C. (Creator), Molloy, E. K. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Sep 19 2017

  DOI: 10.13012/B2IDB-7735354_V1

  Dataset

• Using INC within Divide-and-Conquer Phylogeny Estimation - Datasets

  Le, T. (Creator), Sy, A. (Creator), Molloy, E. K. (Creator), Zhang, Q. (Creator), Rao, S. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Jan 27 2019

  DOI: 10.13012/B2IDB-8518809_V1

  Dataset

• Disjoint Tree Mergers for Large-Scale Maximum LikelihoodTree Estimation

  Park, M. (Creator), Zaharias, P. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Apr 11 2021

  DOI: 10.13012/B2IDB-7008049_V1

  Dataset

• Data from: Accurate Large-scale Phylogeny-Aware Alignment using BAli-Phy

  Gupta, M. (Creator), Zaharias, P. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Apr 30 2021

  DOI: 10.13012/B2IDB-7863273_V1

  Dataset

• NJMerge: A generic technique for scaling phylogeny estimation methods and its application to species trees

  Molloy, E. K. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Jul 29 2018

  DOI: 10.13012/B2IDB-1424746_V1

  Dataset

• Data from: Polynomial-Time Statistical Estimation of Species Trees under Gene Duplication and Loss

  Legried, B. (Creator), Molloy, E. K. (Creator), Warnow, T. (Creator) & Roch, S. (Creator), University of Illinois Urbana-Champaign, Jan 22 2020

  DOI: 10.13012/B2IDB-2626814_V2

  Dataset