Research Output

Filter
Article
2018

Genetic Reduction in Left Ventricular Protein Kinase C-α and Adverse Ventricular Remodeling in Human Subjects

Hu, R., Morley, M. P., Brandimarto, J., Tucker, N. R., Parsons, V. A., Zhao, S. D., Meder, B., Katus, H. A., Rühle, F., Stoll, M., Villard, E., Cambien, F., Lin, H., Smith, N. L., Felix, J. F., Vasan, R. S., van der Harst, P., Newton-Cheh, C., Li, J., Kim, C. E. & 10 others, Hakonarson, H., Hannenhalli, S., Ashley, E. A., Moravec, C. S., Tang, W. H. W., Maillet, M., Molkentin, J. D., Ellinor, P. T., Margulies, K. B. & Cappola, T. P., Mar 1 2018, In : Circulation. Genomic and precision medicine. 11, 3, p. e001901

Research output: Contribution to journalArticle

Open Access

Gene tree parsimony for incomplete gene trees: Addressing true biological loss

Bayzid, M. S. & Warnow, T., Jan 19 2018, In : Algorithms for Molecular Biology. 13, 1, 1.

Research output: Contribution to journalArticle

GradientScanSurv—An exhaustive association test method for gene expression data with censored survival outcome

Yi, M., Zhu, R. & Stephens, R. M., Dec 2018, In : PloS one. 13, 12, e0207590.

Research output: Contribution to journalArticle

Heat Kernels of Non-symmetric Jump Processes: Beyond the Stable Case

Kim, P., Song, R. & Vondraček, Z., Jul 1 2018, In : Potential Analysis. 49, 1, p. 37-90 54 p.

Research output: Contribution to journalArticle

High-density linkage mapping of vitamin E content in maize grain

Fenton, M. E., Owens, B. F., Lipka, A. E., Ortiz, D., Tiede, T., Mateos-Hernandez, M., Ferruzzi, M. G. & Rocheford, T., Mar 1 2018, In : Molecular Breeding. 38, 3, 31.

Research output: Contribution to journalArticle

HIV messaging on Twitter: An analysis of current practice and data-driven recommendations

Lohmann, S., White, B. X., Zuo, Z., Chan, M. P. S., Morales, A., Li, B., Zhai, C. & Albarracín, D., 2018, In : AIDS. 32, 18, p. 2799-2805 7 p.

Research output: Contribution to journalArticle

How do gender, learning goals, and forum participation predict persistence in a computer science MOOC?

Crues, R. W., Henricks, G. M., Perry, M., Bhat, S., Anderson, C. J., Shaik, N. & Angrave, L., Sep 2018, In : ACM Transactions on Computing Education. 18, 4, 18.

Research output: Contribution to journalArticle

Inference of high-dimensional linear models with time-varying coefficients

Chen, X. & He, Y., Jan 2018, In : Statistica Sinica. 28, 1, p. 255-276 22 p.

Research output: Contribution to journalArticle

Information theoretic approaches to income density estimation with an application to the U.S. income data

Park, S. Y. & Bera, A. K., Dec 1 2018, In : Journal of Economic Inequality. 16, 4, p. 461-486 26 p.

Research output: Contribution to journalArticle

Integrated Analysis of Genetic Ancestry and Genomic Alterations across Cancers

Yuan, J., Hu, Z., Mahal, B. A., Zhao, S. D., Kensler, K. H., Pi, J., Hu, X., Zhang, Y., Wang, Y., Jiang, J., Li, C., Zhong, X., Montone, K. T., Guan, G., Tanyi, J. L., Fan, Y., Xu, X., Morgan, M. A., Long, M., Zhang, Y. & 5 others, Zhang, R., Sood, A. K., Rebbeck, T. R., Dang, C. V. & Zhang, L., Oct 8 2018, In : Cancer Cell. 34, 4, p. 549-560.e9

Research output: Contribution to journalArticle

Integrative genomic analysis predicts causative cis-regulatory mechanisms of the breast cancer–associated genetic variant rs4415084

Zhang, Y., Manjunath, M., Zhang, S., Chasman, D., Roy, S. & Song, J. S., Apr 1 2018, In : Cancer Research. 78, 7, p. 1579-1591 13 p.

Research output: Contribution to journalArticle

Interplay Between Amphetamine and Activity Level in Gene Networks of the Mouse Striatum

Goncalves, T. M., Southey, B. R. & Rodriguez-Zas, S. L., Dec 1 2018, In : Bioinformatics and Biology Insights. 12

Research output: Contribution to journalArticle

Maxminsum steiner systems for access balancing in distributed storage

Dau, H. & Milenkovic, O., Jan 1 2018, In : SIAM Journal on Discrete Mathematics. 32, 3, p. 1644-1671 28 p.

Research output: Contribution to journalArticle

METHCOMP: A special purpose compression platform for DNA methylation data

Peng, J., Milenkovic, O. & Ochoa, I., 2018, In : Bioinformatics. 34, 15, p. 2654-2656 3 p.

Research output: Contribution to journalArticle

Modeling learner heterogeneity: A mixture learning model with responses and response times

Zhang, S. & Wang, S., Dec 5 2018, In : Frontiers in Psychology. 9, DEC, 2339.

Research output: Contribution to journalArticle

Open Access

Models, methods and network topology: Experimental design for the study of interference

Bowers, J., Desmarais, B. A., Frederickson, M., Ichino, N., Lee, H. W. & Wang, S., Jul 2018, In : Social Networks. 54, p. 196-208 13 p.

Research output: Contribution to journalArticle

More accurate semiparametric regression in pharmacogenomics

Rong, Y., Zhao, S. D., Zhu, J., Yuan, W., Cheng, W. & Li, Y., 2018, In : Statistics and its Interface. 11, 4, p. 573-580 8 p.

Research output: Contribution to journalArticle

Multilayer tensor factorization with applications to recommender systems

Bi, X., Qu, A. & Shen, X., Jan 1 2018, In : Annals of Statistics. 46, 6B, p. 3308-3333 26 p.

Research output: Contribution to journalArticle

Multivariate computational analysis of biosensor's data for improved CD64 quantification for sepsis diagnosis

Hassan, U., Zhu, R. & Bashir, R., Apr 21 2018, In : Lab on a chip. 18, 8, p. 1231-1240 10 p.

Research output: Contribution to journalArticle

Mutually uncorrelated primers for DNA-based data storage

Tabatabaei Yazdi, S. M. H., Kiah, H. M., Gabrys, R. & Milenkovic, O., Sep 2018, In : IEEE Transactions on Information Theory. 64, 9, p. 6283-6296 14 p., 8255669.

Research output: Contribution to journalArticle

Numerical algorithms for mean exit time and escape probability of stochastic systems with asymmetric Lévy motion

Wang, X., Duan, J., Li, X. & Song, R., Nov 15 2018, In : Applied Mathematics and Computation. 337, p. 618-634 17 p.

Research output: Contribution to journalArticle

OCTAL: Optimal Completion of gene trees in polynomial time

Christensen, S., Molloy, E. K., Vachaspati, P. & Warnow, T., Mar 15 2018, In : Algorithms for Molecular Biology. 13, 1, 6.

Research output: Contribution to journalArticle

Online C-benevolent job scheduling on multiple machines

Yu, G. & Jacobson, S. H., Mar 1 2018, In : Optimization Letters. 12, 2, p. 251-263 13 p.

Research output: Contribution to journalArticle

On matrix estimation under monotonicity constraints

Chatterjee, S., Guntuboyina, A. & Sen, B., May 2018, In : Bernoulli. 24, 2, p. 1072-1100 29 p.

Research output: Contribution to journalArticle

Paired threshold graphs

Ravanmehr, V., Puleo, G. J., Bolouki, S. & Milenković, O., Dec 11 2018, In : Discrete Applied Mathematics. 250, p. 291-308 18 p.

Research output: Contribution to journalArticle

PASTA for proteins

Collins, K. & Warnow, T., Nov 15 2018, In : Bioinformatics. 34, 22, p. 3939-3941 3 p.

Research output: Contribution to journalArticle

Permanent emergency: Inequality in access to hospitalisation among urban elderly Chinese

Liao, T. F. & Wang, C., Aug 3 2018, In : Global Public Health. 13, 8, p. 1098-1113 16 p.

Research output: Contribution to journalArticle

Push versus pull

Jacobson, S. H., Apr 2018, In : Communications of the ACM. 61, 4, p. 25-27 3 p.

Research output: Contribution to journalArticle

Quantification of uncertainty in aboveground biomass estimates derived from small-footprint airborne LiDAR

Xu, Q., Man, A., Fredrickson, M., Hou, Z., Pitkänen, J., Wing, B., Ramirez, C., Li, B. & Greenberg, J. A., Oct 2018, In : Remote Sensing of Environment. 216, p. 514-528 15 p.

Research output: Contribution to journalArticle

Quantum transport senses community structure in networks

Zhao, C. & Song, J. S., Aug 3 2018, In : Physical Review E. 98, 2, 022301.

Research output: Contribution to journalArticle

Radioactive Seed Localization Versus Wire Localization for Nonpalpable Breast Lesions: A Two-Year Initial Experience at a Large Community Hospital

Stelle, L., Schoenheit, T., Brubaker, A., Tang, X., Qu, P., Cradock, K. & Higham, A., Jan 1 2018, In : Annals of Surgical Oncology. 25, 1, p. 131-136 6 p.

Research output: Contribution to journalArticle

Realizing the potential of data science

Berman, F., Rutenbar, R. A., Hailpern, B., Christensen, H., Davidson, S., Estrin, D., Franklin, M., Martonosi, M., Raghavan, P., Stodden, V. & Szalay, A. S., Apr 2018, In : Communications of the ACM. 61, 4, p. 67-72 6 p.

Research output: Contribution to journalArticle

Repairing Reed-Solomon Codes With Multiple Erasures

Dau, H., Duursma, I. M., Kiah, H. M. & Milenkovic, O., Oct 2018, In : IEEE Transactions on Information Theory. 64, 10, p. 6567-6582 16 p., 8340062.

Research output: Contribution to journalArticle

Sampling strategies for conditional inference on multigraphs

Eisinger, R. D. & Chen, Y., Jan 1 2018, In : Statistics and its Interface. 11, 4, p. 649-656 8 p.

Research output: Contribution to journalArticle

Sequential Detection of Compromised Items Using Response Times in Computerized Adaptive Testing

Choe, E. M., Zhang, J. & Chang, H. H., Sep 1 2018, In : Psychometrika. 83, 3, p. 650-673 24 p.

Research output: Contribution to journalArticle

SIESTA: Enhancing searches for optimal supertrees and species trees

Vachaspati, P. & Warnow, T., May 8 2018, In : BMC genomics. 19, 252.

Research output: Contribution to journalArticle

Simple tests for endogeneity of spatial weights matrices

Bera, A. K., Doğan, O. & Taşpınar, S., Mar 2018, In : Regional Science and Urban Economics. 69, p. 130-142 13 p.

Research output: Contribution to journalArticle

Simple tests for social interaction models with network structures

Doğan, O., Taṣpınar, S. & Bera, A. K., Apr 3 2018, In : Spatial Economic Analysis. 13, 2, p. 212-246 35 p.

Research output: Contribution to journalArticle

Simultaneous radiation of bird and mammal lice following the K-Pg boundary

Johnson, K. P., Nguyen, N. P., Sweet, A. D., Boyd, B. M., Warnow, T. & Allen, J. M., 2018, In : Biology Letters. 14, 5, 20180141.

Research output: Contribution to journalArticle

SOFSAT: Towards a Setlike Operator Based Framework for Semantic Analysis of Text

Karmaker Santu, S. K., Geigle, C., Ferguson, D., Cope, W., Kalantzis, M., Searsmith, D. & Zhai, C., Dec 2018, In : SIGKDD Explorations Newsletter. 20, 2, p. 21–30

Research output: Contribution to journalArticle

Stochastic flows for Lévy processes with Hölder drifts

Chen, Z. Q., Song, R. & Zhang, X., Jan 1 2018, In : Journal of Physical Activity and Health. 15, 12, p. 1755-1788 34 p.

Research output: Contribution to journalArticle

Striatal transcriptome of a mouse model of ADHD reveals a pattern of synaptic remodeling

Sorokina, A. M., Saul, M., Goncalves, T. M., Gogola, J. V., Majdak, P., Rodriguez-Zas, S. L. & Rhodes, J. S., Aug 2018, In : PloS one. 13, 8, e0201553.

Research output: Contribution to journalArticle

Suppression of explosion by polynomial noise for nonlinear differential systems

Feng, L., Li, S., Song, R. & Li, Y., Jul 1 2018, In : Science China Information Sciences. 61, 7, 70215.

Research output: Contribution to journalArticle

SVDquest: Improving SVDquartets species tree estimation using exact optimization within a constrained search space

Vachaspati, P. & Warnow, T., Jul 2018, In : Molecular Phylogenetics and Evolution. 124, p. 122-136 15 p.

Research output: Contribution to journalArticle

Testing mutual independence in high dimension via distance covariance

Yao, S., Zhang, X. & Shao, X., Jun 2018, In : Journal of the Royal Statistical Society. Series B: Statistical Methodology. 80, 3, p. 455-480 26 p.

Research output: Contribution to journalArticle

Testing spatial regression models under nonregular conditions

Kao, S. Y. H. & Bera, A. K., Aug 1 2018, In : Empirical Economics. 55, 1, p. 85-111 27 p.

Research output: Contribution to journalArticle

The changing face of money: Forging collective memory with chinese banknote designs

Liao, T. F. & Wang, C., May 1 2018, In : China Review. 18, 2, p. 87-119 33 p.

Research output: Contribution to journalArticle

The development and application of bioinformatics core competencies to improve bioinformatics training and education

Mulder, N., Schwartz, R., Brazas, M. D., Brooksbank, C., Gaeta, B., Morgan, S. L., Pauley, M. A., Rosenwald, A., Rustici, G., Sierk, M., Warnow, T. & Welch, L., Feb 2018, In : PLoS computational biology. 14, 2, e1005772.

Research output: Contribution to journalArticle