Datasets
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The 16S.B.ALL dataset in 100-HF condition
Shen, C. (Creator), Park, M. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Mar 25 2022
DOI: 10.13012/B2IDB-6604429_V1
Dataset
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Datasets for EMMA: A New Method for Computing Multiple Sequence Alignments given a Constraint Subset Alignment
Shen, C. (Creator), Liu, B. (Creator), Williams, K. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Aug 8 2022
DOI: 10.13012/B2IDB-2567453_V1
Dataset
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5000-het: Dataset of Nucleotide Sequences with a Form of Evolutionary Sequence Length Heterogeneity
Liu, B. (Creator), Shen, C. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Aug 5 2022
DOI: 10.13012/B2IDB-3974819_V1
Dataset
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Data for SEPP: SATé-Enabled Phylogenetic Placement.
Mirarab, S. (Creator), Ngyuen, N.-P. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Jul 1 2012
DOI: 10.13012/B2IDB-9316702_V1
Dataset
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Data for Taxonomic Identification and Phylogenetic Profiling
Nguyen, N.-P. (Creator), Mirarab, S. (Creator), Bo, L. (Creator), Pop, M. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Oct 29 2014
DOI: 10.13012/B2IDB-8783447_V1
Dataset
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Data for SuperFine, DACTAL, and BeeTLe
Swenson, M. S. (Creator), Suri, R. (Creator), Linder, C. R. (Creator), Warnow, T. (Creator), Nguyen, N.-P. (Creator), Mirarab, S. (Creator), Neves, D. T. (Creator), Sobral, J. L. (Creator), Pingali, K. (Creator), Nelesen, S. (Creator), Liu, K. (Creator) & Wang, L.-S. (Creator), University of Illinois Urbana-Champaign, Sep 20 2011
DOI: 10.13012/B2IDB-2952208_V1
Dataset
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Data for 16S and 23S rRNA alignments
Mirarab, S. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Sep 16 2017
DOI: 10.13012/B2IDB-1614388_V1
Dataset
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Data for Ultra-Large Alignments Using Phylogeny-Aware Profiles
Nguyen, N.-P. (Creator), Mirarab, S. (Creator), Kumar, K. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Dec 16 2015
DOI: 10.13012/B2IDB-3174395_V1
Dataset
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HIPPI Dataset
Nguyen, N.-P. (Creator), Nute, M. (Creator), Mirarab, S. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Aug 16 2016
DOI: 10.13012/B2IDB-6795126_V1
Dataset
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Data from: Polynomial-Time Statistical Estimation of Species Trees under Gene Duplication and Loss
Legried, B. (Creator), Molloy, E. K. (Creator), Warnow, T. (Creator) & Roch, S. (Creator), University of Illinois Urbana-Champaign, Jan 22 2020
DOI: 10.13012/B2IDB-2626814_V2
Dataset
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Disjoint Tree Mergers for Large-Scale Maximum LikelihoodTree Estimation
Park, M. (Creator), Zaharias, P. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Apr 11 2021
DOI: 10.13012/B2IDB-7008049_V1
Dataset
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Embedded dataset in Poincare Balls
Pan, C. (Creator), Peng, J. (Creator), Chien, E. (Creator) & Milenkovic, O. (Creator), University of Illinois Urbana-Champaign, Jun 1 2023
DOI: 10.13012/B2IDB-6901251_V1
Dataset
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Data from: DISCO+QR: Rooting Species Trees in the Presence of GDL and ILS
Willson, J. (Creator), Tabatabaee, Y. (Creator), Liu, B. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Feb 7 2023
DOI: 10.13012/B2IDB-5748609_V1
Dataset
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Data from: Phylogenomic species tree estimation in the presence of incomplete lineage sorting and horizontal gene transfer
Davidson, R. (Creator), Vachaspati, P. (Creator), Mirarab, S. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Oct 22 2023
DOI: 10.13012/B2IDB-6670066_V1
Dataset
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Supplemental File companion to a manuscript to be submitted
Rodriguez Zas, S. L. (Creator), University of Illinois Urbana-Champaign, Dec 23 2023
DOI: 10.13012/B2IDB-8635710_V1
Dataset
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The Improbable Nature of the Implied Correlation Matrix from Spatial Regression Models
Sen, M. (Creator) & Bera, A. K. (Creator), Harvard Dataverse, Sep 23 2015
DOI: 10.7910/DVN/GY65TP
Dataset
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Scripts for testing the error rate of polyRAD
Clark, L. V. (Creator), Lipka, A. E. (Creator) & Sacks, E. J. (Creator), University of Illinois Urbana-Champaign, Nov 21 2018
DOI: 10.13012/B2IDB-9729830_V2
Dataset
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Data for Genome-wide association and genomic prediction for yield and component traits of Miscanthus sacchariflorus
Njuguna, J. (Creator), Clark, L. (Creator), Lipka, A. E. (Creator), Anzoua, K. (Creator), Bagmet, L. (Creator), Chebukin, P. (Creator), Dwiyanti, M. (Creator), Dzyubenko, E. (Creator), Dzyubenko, N. (Creator), Ghimire, B. (Creator), Jin, X. (Creator), Johnson, D. (Creator), Nagano, H. (Creator), Peng, J. (Creator), Petersen, K. (Creator), Sabitov, A. (Creator), Seong, E. (Creator), Yamada, T. (Creator), Yoo, J. (Creator), Yu, C. (Creator), Zhao, H. (Creator), Long, S. P. (Creator) & Sacks, E. J. (Creator), University of Illinois Urbana-Champaign, Jul 28 2023
DOI: 10.13012/B2IDB-6439486_V1
Dataset
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PASTA For Proteins Data (BALiBASE)
Collins, K. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Apr 6 2018
DOI: 10.13012/B2IDB-4074787_V1
Dataset
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Data from: FastMulRFS: Statistically consistent polynomial time species tree estimation under gene duplication
Molloy, E. K. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Nov 11 2019
DOI: 10.13012/B2IDB-5721322_V1
Dataset
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Data from: TreeMerge: A new method for improving the scalability of species tree estimation methods
Molloy, E. K. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Mar 19 2019
DOI: 10.13012/B2IDB-9570561_V1
Dataset
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NJMerge: A generic technique for scaling phylogeny estimation methods and its application to species trees
Molloy, E. K. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Jul 29 2018
DOI: 10.13012/B2IDB-1424746_V1
Dataset
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Data from: Polynomial-Time Statistical Estimation of Species Trees under Gene Duplication and Loss
Legried, B. (Creator), Molloy, E. K. (Creator), Warnow, T. (Creator) & Roch, S. (Creator), University of Illinois Urbana-Champaign, Jul 15 2020
DOI: 10.13012/B2IDB-2626814_V3
Dataset
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Fragmentary Sequences for Variable-Sized RNAsim Datasets
Warnow, T. (Creator) & Wedell, E. (Creator), University of Illinois Urbana-Champaign, Jun 16 2021
DOI: 10.13012/B2IDB-8788479_V1
Dataset
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RNASim-VS2
Chu, G. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Jun 7 2022
DOI: 10.13012/B2IDB-8812049_V1
Dataset