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2020

Acoustic-based chemical tools for profiling the tumor microenvironment

Yadav, A. K., Hernandez, S., Su, S. & Chan, J., Aug 2020, In : Current Opinion in Chemical Biology. 57, p. 114-121 8 p.

Research output: Contribution to journalReview article

Cellular and molecular basis of liver regeneration

Bangru, S. & Kalsotra, A., Apr 2020, In : Seminars in Cell and Developmental Biology. 100, p. 74-87 14 p.

Research output: Contribution to journalReview article

Collagen, stiffness, and adhesion: The evolutionary basis of vertebrate mechanobiology

Tang, V. W., Aug 1 2020, In : Molecular biology of the cell. 31, 17, p. 1823-1834 12 p.

Research output: Contribution to journalReview article

Open Access

Computational Dissection of Membrane Transport at a Microscopic Level

Jiang, T., Wen, P. C., Trebesch, N., Zhao, Z., Pant, S., Kapoor, K., Shekhar, M. & Tajkhorshid, E., Mar 2020, In : Trends in Biochemical Sciences. 45, 3, p. 202-216 15 p.

Research output: Contribution to journalReview article

Confronting Racism in Chemistry Journals

Burrows, C. J., Huang, J., Wang, S., Kim, H. J., Meyer, G. J., Schanze, K., Lee, T. R., Lutkenhaus, J. L., Kaplan, D., Jones, C., Bertozzi, C., Kiessling, L., Mulcahy, M. B., Lindsley, C. W., Finn, M. G., Blum, J. D., Kamat, P., Choi, W., Snyder, S., Aldrich, C. C. & 52 others, Rowan, S., Liu, B., Liotta, D., Weiss, P. S., Zhang, D., Ganesh, K. N., Atwater, H. A., Gooding, J. J., Allen, D. T., Voigt, C. A., Sweedler, J., Schepartz, A., Rotello, V., Lecommandoux, S., Sturla, S. J., Hammes-Schiffer, S., Buriak, J., Steed, J. W., Wu, H., Zimmerman, J., Brooks, B., Savage, P., Tolman, W., Hofmann, T. F., Brennecke, J. F., Holme, T. A., Merz, K. M., Scuseria, G., Jorgensen, W., Georg, G. I., Wang, S., Proteau, P., Yates, J. R., Stang, P., Walker, G. C., Hillmyer, M., Taylor, L. S., Odom, T. W., Carreira, E., Rossen, K., Chirik, P., Miller, S. J., Shea, J. E., McCoy, A., Zanni, M., Hartland, G., Scholes, G., Loo, J. A., Milne, J., Tegen, S. B., Kulp, D. T. & Laskin, J., 2020, (Accepted/In press) In : Journal of Natural Products.

Research output: Contribution to journalReview article

Open Access

Confronting Racism in Chemistry Journals

Burrows, C. J., Huang, J., Wang, S., Kim, H. J., Meyer, G. J., Schanze, K., Lee, T. R., Lutkenhaus, J. L., Kaplan, D., Jones, C., Bertozzi, C., Kiessling, L., Mulcahy, M. B., Lindsley, C. W., Finn, M. G., Blum, J. D., Kamat, P., Choi, W., Snyder, S., Aldrich, C. C. & 52 others, Rowan, S., Liu, B., Liotta, D., Weiss, P. S., Zhang, D., Ganesh, K. N., Atwater, H. A., Gooding, J. J., Allen, D. T., Voigt, C. A., Sweedler, J., Schepartz, A., Rotello, V., Lecommandoux, S., Sturla, S. J., Hammes-Schiffer, S., Buriak, J., Steed, J. W., Wu, H., Zimmerman, J., Brooks, B., Savage, P., Tolman, W., Hofmann, T. F., Brennecke, J. F., Holme, T. A., Merz, K. M., Scuseria, G., Jorgensen, W., Georg, G. I., Wang, S., Proteau, P., Yates, J. R., Stang, P., Walker, G. C., Hillmyer, M., Taylor, L. S., Odom, T. W., Carreira, E., Rossen, K., Chirik, P., Miller, S. J., Shea, J. E., McCoy, A., Zanni, M., Hartland, G., Scholes, G., Loo, J. A., Milne, J., Tegen, S. B., Kulp, D. T. & Laskin, J., 2020, (Accepted/In press) In : Biochemistry.

Research output: Contribution to journalReview article

Open Access

CYP2J2 Molecular Recognition: A New Axis for Therapeutic Design

Das, A., Weigle, A. T., Arnold, W. R., Kim, J. S., Carnevale, L. N. & Huff, H. C., Nov 2020, In : Pharmacology and Therapeutics. 215, 107601.

Research output: Contribution to journalReview article

D-Alanine: Distribution, origin, physiological relevance, and implications in disease

Lee, C. J., Qiu, T. A. & Sweedler, J. V., Nov 2020, In : Biochimica et Biophysica Acta - Proteins and Proteomics. 1868, 11, 140482.

Research output: Contribution to journalReview article

Lipid Rafts, Sphingolipids, and Ergosterol in Yeast Vacuole Fusion and Maturation

Hurst, L. R. & Fratti, R. A., Jul 3 2020, In : Frontiers in Cell and Developmental Biology. 8, 539.

Research output: Contribution to journalReview article

Open Access

Natural product biosynthesis: What’s next? An introduction to the JBC Reviews Thematic Series

Nair, S. K. & Jez, J. M., Jan 10 2020, In : Journal of Biological Chemistry. 295, 2, p. 335-336 2 p.

Research output: Contribution to journalReview article

Open Access

Progress in the Enzymology of the Mitochondrial Diseases of Lipoic Acid Requiring Enzymes

Cronan, J. E., May 21 2020, In : Frontiers in Genetics. 11, 510.

Research output: Contribution to journalReview article

Open Access

Syntaxin Clustering and Optogenetic Control for Synaptic Membrane Fusion

Li, M., Oh, T. J., Fan, H., Diao, J. & Zhang, K., Aug 7 2020, In : Journal of Molecular Biology. 432, 17, p. 4773-4782 10 p.

Research output: Contribution to journalReview article

Ubiquitination and E3 Ubiquitin Ligases in Rare Neurological Diseases with Comorbid Epilepsy

Zhu, J. & Tsai, N. P., Jan 21 2020, In : Neuroscience. 428, p. 90-99 10 p.

Research output: Contribution to journalReview article

2019

A small-molecule competitive inhibitor of phosphatidic acid binding by the AAA+ protein NSF/Sec18 blocks the SNARE-priming stage of vacuole fusion

Sparks, R. P., Arango, A. S., Starr, M. L., Aboff, Z. L., Hurst, L. R., Rivera-Kohr, D. A., Zhang, C., Harnden, K. A., Jenkins, J. L., Guida, W. C., Tajkhorshid, E. & Fratti, R. A., Nov 15 2019, In : Journal of Biological Chemistry. 294, 46, p. 17168-17185 18 p.

Research output: Contribution to journalReview article

Open Access

Characterization of Lipid-Protein Interactions and Lipid-Mediated Modulation of Membrane Protein Function through Molecular Simulation

Muller, M. P., Jiang, T., Sun, C., Lihan, M., Pant, S., Mahinthichaichan, P., Trifan, A. & Tajkhorshid, E., May 8 2019, In : Chemical reviews. 119, 9, p. 6086-6161 76 p.

Research output: Contribution to journalReview article

Emerging class of omega-3 fatty acid endocannabinoids & their derivatives

Watson, J. E., Kim, J. S. & Das, A., Aug 2019, In : Prostaglandins and Other Lipid Mediators. 143, 106337.

Research output: Contribution to journalReview article

Evolutionary adaptations that enable enzymes to tolerate oxidative stress

Imlay, J. A., Sethu, R. & Rohaun, S. K., Aug 20 2019, In : Free Radical Biology and Medicine. 140, p. 4-13 10 p.

Research output: Contribution to journalReview article

Exploring the Fundamental Structures of Life: Non-Targeted, Chemical Analysis of Single Cells and Subcellular Structures

Neumann, E. K., Do, T. D., Comi, T. J. & Sweedler, J. V., Jul 8 2019, In : Angewandte Chemie - International Edition. 58, 28, p. 9348-9364 17 p.

Research output: Contribution to journalReview article

Genome organization around nuclear speckles

Chen, Y. & Belmont, A. S., Apr 2019, In : Current Opinion in Genetics and Development. 55, p. 91-99 9 p.

Research output: Contribution to journalReview article

Guidelines for DNA recombination and repair studies: Cellular assays of DNA repair pathways

Klein, H. L., Bačinskaja, G., Che, J., Cheblal, A., Elango, R., Epshtein, A., Fitzgerald, D. M., Gómez-González, B., Khan, S. R., Kumar, S., Leland, B. A., Marie, L., Mei, Q., Miné-Hattab, J., Piotrowska, A., Polleys, E. J., Putnam, C. D., Radchenko, E. A., Saada, A. A., Sakofsky, C. J. & 28 others, Shim, E. Y., Stracy, M., Xia, J., Yan, Z., Yin, Y., Aguilera, A., Argueso, J. L., Freudenreich, C. H., Gasser, S. M., Gordenin, D. A., Haber, J. E., Ira, G., Jinks-Robertson, S., King, M. C., Kolodner, R. D., Kuzminov, A., Lambert, S. A. E., Lee, S. E., Miller, K. M., Mirkin, S. M., Petes, T. D., Rosenberg, S. M., Rothstein, R., Symington, L. S., Zawadzki, P., Kim, N., Lisby, M. & Malkova, A., Jan 2019, In : Microbial Cell. 6, 1, p. 1-64 64 p.

Research output: Contribution to journalReview article

Open Access

Investigating brain d-serine: Advocacy for good practices

Mothet, J. P., Billard, J. M., Pollegioni, L., Coyle, J. T. & Sweedler, J. V., May 2019, In : Acta Physiologica. 226, 1, e13257.

Research output: Contribution to journalReview article

Multi-cellular engineered living systems: Building a community around responsible research on emergence

Sample, M., Boulicault, M., Allen, C., Bashir, R., Hyun, I., Levis, M., Lowenthal, C., Mertz, D., Montserrat, N., Palmer, M. J., Saha, K. & Zartman, J., Jul 10 2019, In : Biofabrication. 11, 4, 043001.

Research output: Contribution to journalReview article

Open Access

Nuclear receptors, cholesterol homeostasis and the immune system

Shahoei, S. H. & Nelson, E. R., Jul 2019, In : Journal of Steroid Biochemistry and Molecular Biology. 191, 105364.

Research output: Contribution to journalReview article

Oxysterols and nuclear receptors

Ma, L. & Nelson, E. R., Mar 15 2019, In : Molecular and Cellular Endocrinology. 484, p. 42-51 10 p.

Research output: Contribution to journalReview article

Pasteurella multocida: Genotypes and genomics

Peng, Z., Wang, X., Zhou, R., Chen, H., Wilson, B. A. & Wu, B., 2019, In : Microbiology and Molecular Biology Reviews. 83, 4, e00014-19.

Research output: Contribution to journalReview article

Reactive oxygen species-responsive drug delivery systems for the treatment of neurodegenerative diseases

Ballance, W. C., Qin, E. C., Chung, H. J., Gillette, M. U. & Kong, H., Oct 2019, In : Biomaterials. 217, 119292.

Research output: Contribution to journalReview article

Single-particle cryo-EM studies of transmembrane proteins in SMA copolymer nanodiscs

Sun, C. & Gennis, R. B., Jul 2019, In : Chemistry and Physics of Lipids. 221, p. 114-119 6 p.

Research output: Contribution to journalReview article

Teaching an Old Virus New Tricks: A Review on New Approaches to Study Age-Old Questions in Influenza Biology

Lakdawala, S. S., Lee, N. & Brooke, C. B., Oct 4 2019, In : Journal of Molecular Biology. 431, 21, p. 4247-4258 12 p.

Research output: Contribution to journalReview article

The bare necessities: Uncovering essential and condition-critical genes with transposon sequencing

Shields, R. C. & Jensen, P. A., Apr 2019, In : Molecular Oral Microbiology. 34, 2, p. 39-50 12 p.

Research output: Contribution to journalReview article

The Participation of Regulatory Lipids in Vacuole Homotypic Fusion

Starr, M. L. & Fratti, R. A., Jun 2019, In : Trends in Biochemical Sciences. 44, 6, p. 546-554 9 p.

Research output: Contribution to journalReview article

Visual hallucinations, thalamocortical physiology and Lewy body disease: A review

Esmaeeli, S., Murphy, K., Swords, G. M., Ibrahim, B. A., Brown, J. W. & Llano, D. A., Aug 2019, In : Neuroscience and Biobehavioral Reviews. 103, p. 337-351 15 p.

Research output: Contribution to journalReview article

Where in the world do bacteria experience oxidative stress?

Imlay, J. A., Feb 1 2019, In : Environmental Microbiology. 21, 2, p. 521-530 10 p.

Research output: Contribution to journalReview article

2018

3D printing for preoperative planning and surgical training: a review

Ganguli, A., Pagan-Diaz, G. J., Grant, L., Cvetkovic, C., Bramlet, M., Vozenilek, J., Kesavadas, T. & Bashir, R., Sep 1 2018, In : Biomedical microdevices. 20, 3, 65.

Research output: Contribution to journalReview article

Advances in synthesis of biotin and assembly of lipoic acid

Cronan, J. E., Dec 2018, In : Current Opinion in Chemical Biology. 47, p. 60-66 7 p.

Research output: Contribution to journalReview article

Auditory system dysfunction in Alzheimer disease and its prodromal states: A review

Swords, G. M., Nguyen, L. T., Mudar, R. A. & Llano, D. A., Jul 2018, In : Ageing Research Reviews. 44, p. 49-59 11 p.

Research output: Contribution to journalReview article

CAMP, Ca2+, pHi, and NO Regulate H-like Cation Channels That Underlie Feeding and Locomotion in the Predatory Sea Slug Pleurobranchaea californica

Green, D. J., Huang, R. C., Sudlow, L., Hatcher, N., Potgieter, K., McCrohan, C., Lee, C., Romanova, E. V., Sweedler, J. V., Gillette, M. L. U. & Gillette, R., Aug 15 2018, In : ACS Chemical Neuroscience. 9, 8, p. 1986-1993 8 p.

Research output: Contribution to journalReview article

Causes and consequences of spatial within-host viral spread

Gallagher, M. E., Brooke, C. B., Ke, R. & Koelle, K., Nov 13 2018, In : Viruses. 10, 11, 627.

Research output: Contribution to journalReview article

Open Access

Chemical Physics in Living Cells-using Light to Visualize and Control Intracellular Signal Transduction

Krishnamurthy, V. V. & Zhang, K., 2018, In : Chinese Journal of Chemical Physics. 31, 4, p. 375-392 18 p.

Research output: Contribution to journalReview article

Circadian redox rhythms in the regulation of neuronal excitability

Bothwell, M. Y. & Gillette, M. U., May 1 2018, In : Free Radical Biology and Medicine. 119, p. 45-55 11 p.

Research output: Contribution to journalReview article

Complex integration of intrinsic and peripheral signaling is required for pituitary gland development

Edwards, W. & Raetzman, L. T., Sep 1 2018, In : Biology of reproduction. 99, 3, p. 504-513 10 p.

Research output: Contribution to journalReview article

Development of Photoacoustic Probes for in Vivo Molecular Imaging

Reinhardt, C. J. & Chan, J., Jan 16 2018, In : Biochemistry. 57, 2, p. 194-199 6 p.

Research output: Contribution to journalReview article

Diverse evolutionary origins and mechanisms of lens regeneration

Henry, J. J. & Hamilton, P. W., 2018, In : Molecular biology and evolution. 35, 7, p. 1563-1575 13 p.

Research output: Contribution to journalReview article

Microscopic view of lipids and their diverse biological functions

Wen, P. C., Mahinthichaichan, P., Trebesch, N., Jiang, T., Zhao, Z., Shinn, E., Wang, Y., Shekhar, M., Kapoor, K., Chan, C. K. & Tajkhorshid, E., Aug 2018, In : Current Opinion in Structural Biology. 51, p. 177-186 10 p.

Research output: Contribution to journalReview article

Nanodiscs: A Controlled Bilayer Surface for the Study of Membrane Proteins

McLean, M. A., Gregory, M. C. & Sligar, S. G., May 20 2018, In : Annual Review of Biophysics. 47, p. 107-124 18 p.

Research output: Contribution to journalReview article

Nuclear Long Noncoding RNAs: Key Regulators of Gene Expression

Sun, Q., Hao, Q. & Prasanth, K. V., Feb 2018, In : Trends in Genetics. 34, 2, p. 142-157 16 p.

Research output: Contribution to journalReview article

Point-of-care sensors for the management of sepsis

Reddy, B., Hassan, U., Seymour, C., Angus, D. C., Isbell, T. S., White, K., Weir, W., Yeh, L., Vincent, A. & Bashir, R., Sep 1 2018, In : Nature biomedical engineering. 2, 9, p. 640-648 9 p.

Research output: Contribution to journalReview article

P-TEFb: Finding its ways to release promoter-proximally paused RNA polymerase II

Li, Y., Liu, M., Chen, L. F. & Chen, R., Mar 15 2018, In : Transcription. 9, 2, p. 88-94 7 p.

Research output: Contribution to journalReview article

Reconstitution and substrate specificity for isopentenyl pyrophosphate of the antiviral radical SAM enzyme viperin

Chakravarti, A., Selvadurai, K., Shahoei, R., Lee, H., Fatma, S., Tajkhorshid, E. & Huang, R. H., Sep 7 2018, In : Journal of Biological Chemistry. 293, 36, p. 14122-14133 12 p.

Research output: Contribution to journalReview article