Research Output

2020

27-Hydroxycholesterol acts on myeloid immune cells to induce T cell dysfunction, promoting breast cancer progression

Ma, L., Wang, L., Nelson, A. T., Han, C., He, S., Henn, M. A., Menon, K., Chen, J. J., Baek, A. E., Vardanyan, A., Shahoei, S. H., Park, S., Shapiro, D. J., Nanjappa, S. G. & Nelson, E. R., Aug 28 2020, (Accepted/In press) In : Cancer Letters.

Research output: Contribution to journalArticle

Aberrant Expression of a Non-muscle RBFOX2 Isoform Triggers Cardiac Conduction Defects in Myotonic Dystrophy

Misra, C., Bangru, S., Lin, F., Lam, K., Koenig, S. N., Lubbers, E. R., Hedhli, J., Murphy, N. P., Parker, D. J., Dobrucki, L. W., Cooper, T. A., Tajkhorshid, E., Mohler, P. J. & Kalsotra, A., Mar 23 2020, In : Developmental cell. 52, 6, p. 748-763.e6

Research output: Contribution to journalArticle

A bifunctional salvage pathway for two distinct S-adenosylmethionine by-products that is widespread in bacteria, including pathogenic Escherichia coli

North, J. A., Wildenthal, J. A., Erb, T. J., Evans, B. S., Byerly, K. M., Gerlt, J. A. & Tabita, F. R., May 1 2020, In : Molecular Microbiology. 113, 5, p. 923-937 15 p.

Research output: Contribution to journalArticle

A computational framework to explore large-scale biosynthetic diversity

Navarro-Muñoz, J. C., Selem-Mojica, N., Mullowney, M. W., Kautsar, S. A., Tryon, J. H., Parkinson, E. I., De Los Santos, E. L. C., Yeong, M., Cruz-Morales, P., Abubucker, S., Roeters, A., Lokhorst, W., Fernandez-Guerra, A., Cappelini, L. T. D., Goering, A. W., Thomson, R. J., Metcalf, W. W., Kelleher, N. L., Barona-Gomez, F. & Medema, M. H., Jan 1 2020, In : Nature chemical biology. 16, 1, p. 60-68 9 p.

Research output: Contribution to journalArticle

A Computer Conquers Tactical Combinations

Blair, D. J. & Burke, M. D., Jan 9 2020, In : Chem. 6, 1, p. 12-13 2 p.

Research output: Contribution to journalArticle

Acoustic-based chemical tools for profiling the tumor microenvironment

Yadav, A. K., Hernandez, S., Su, S. & Chan, J., Aug 2020, In : Current Opinion in Chemical Biology. 57, p. 114-121 8 p.

Research output: Contribution to journalReview article

Activity-Based Sensing of Ascorbate by Using Copper-Mediated Oxidative Bond Cleavage

Yu, Z. H., Reinhardt, C. J., Wong, T. H. F., Tong, K. Y., Chan, J. & Au-Yeung, H. Y., Jul 17 2020, In : Chemistry - A European Journal. 26, 40, p. 8794-8800 7 p.

Research output: Contribution to journalArticle

Acute exposure to physiological doses of triiodothyronine does not induce gonadal caspase 3 activity in goldfish in vitro

Allan, E. R. O., Dores, C. B., Nelson, E. R. & Habibi, H. R., Apr 1 2020, In : General and Comparative Endocrinology. 289, 113382.

Research output: Contribution to journalArticle

A Generalizable Optogenetic Strategy to Regulate Receptor Tyrosine Kinases during Vertebrate Embryonic Development

Krishnamurthy, V. V., Fu, J., Oh, T. J., Khamo, J., Yang, J. & Zhang, K., May 1 2020, In : Journal of Molecular Biology. 432, 10, p. 3149-3158 10 p.

Research output: Contribution to journalArticle

A hypoxia-induced Rab pathway regulates embryo implantation by controlled trafficking of secretory granules

Bhurke, A., Kannan, A., Neff, A., Ma, Q., Laws, M. J., Taylor, R. N., Bagchi, M. K. & Bagchi, I. C., Jun 23 2020, In : Proceedings of the National Academy of Sciences of the United States of America. 117, 25, p. 14532-14542 11 p.

Research output: Contribution to journalArticle

A mass spectrometry-based high-throughput screening method for engineering fatty acid synthases with improved production of medium-chain fatty acids

Xue, P., Si, T., Mishra, S., Zhang, L., Choe, K., Sweedler, J. V. & Zhao, H., Jul 1 2020, In : Biotechnology and bioengineering. 117, 7, p. 2131-2138 8 p.

Research output: Contribution to journalArticle

An Activity-Based Sensing Approach for the Detection of Cyclooxygenase-2 in Live Cells

Yadav, A. K., Reinhardt, C. J., Arango, A. S., Huff, H. C., Dong, L., Malkowski, M. G., Das, A., Tajkhorshid, E. & Chan, J., Feb 17 2020, In : Angewandte Chemie - International Edition. 59, 8, p. 3307-3314 8 p.

Research output: Contribution to journalArticle

An anti-CRISPR viral ring nuclease subverts type III CRISPR immunity

Athukoralage, J. S., McMahon, S. A., Zhang, C., Grüschow, S., Graham, S., Krupovic, M., Whitaker, R. J., Gloster, T. M. & White, M. F., Jan 23 2020, In : Nature. 577, 7791, p. 572-575 4 p.

Research output: Contribution to journalArticle

A natural mutation between SARS-CoV-2 and SARS-CoV determines neutralization by a cross-reactive antibody

Wu, N. C., Yuan, M., Bangaru, S., Huang, D., Zhu, X., Lee, C-C. D., Turner, H. L., Peng, L., Yang, L., Nemazee, D., Ward, A. B. & Wilson, I. A., Sep 21 2020, (In preparation) Cold Spring Harbor Laboratory Press, 37 p. (bioRxiv).

Research output: Working paper

An automated aquatic rack system for rearing marine invertebrates

Henry, J. Q., Lesoway, M. P. & Perry, K. J., May 4 2020, In : BMC biology. 18, 1, 46.

Research output: Contribution to journalArticle

Open Access

An evolutionary path to altered cofactor specificity in a metalloenzyme

Barwinska-Sendra, A., Garcia, Y. M., Sendra, K. M., Baslé, A., Mackenzie, E. S., Tarrant, E., Card, P., Tabares, L. C., Bicep, C., Un, S., Kehl-Fie, T. E. & Waldron, K. J., Dec 1 2020, In : Nature communications. 11, 1, 2738.

Research output: Contribution to journalArticle

Open Access

Antibody Targeted PET Imaging of 64Cu-DOTA-Anti-CEA PEGylated Lipid Nanodiscs in CEA Positive Tumors

Wong, P., Li, L., Chea, J., Hu, W., Poku, E., Ebner, T., Bowles, N., Wong, J. Y. C., Yazaki, P. J., Sligar, S. & Shively, J. E., Mar 18 2020, In : Bioconjugate Chemistry. 31, 3, p. 743-753 11 p.

Research output: Contribution to journalArticle

A Photoactivatable Formaldehyde Donor with Fluorescence Monitoring Reveals Threshold to Arrest Cell Migration

Smaga, L. P., Pino, N. W., Ibarra, G. E., Krishnamurthy, V. & Chan, J., Jan 15 2020, In : Journal of the American Chemical Society. 142, 2, p. 680-684 5 p.

Research output: Contribution to journalArticle

A sensitive and specific nanosensor for monitoring extracellular potassium levels in the brain

Liu, J., Li, F., Wang, Y., Pan, L., Lin, P., Zhang, B., Zheng, Y., Xu, Y., Liao, H., Ko, G., Fei, F., Xu, C., Du, Y., Shin, K., Kim, D., Jang, S. S., Chung, H. J., Tian, H., Wang, Q., Guo, W. & 4 others, Nam, J. M., Chen, Z., Hyeon, T. & Ling, D., Apr 1 2020, In : Nature Nanotechnology. 15, 4, p. 321-330 10 p.

Research output: Contribution to journalArticle

Assessing the Effect of Middle Ear Effusions on Wideband Acoustic Immittance Using Optical Coherence Tomography

Won, J., Monroy, G. L., Huang, P. C., Hill, M. C., Novak, M. A., Porter, R. G., Spillman, D. R., Chaney, E. J., Barkalifa, R. & Boppart, S. A., Jul 1 2020, In : Ear and hearing. p. 811-824 14 p.

Research output: Contribution to journalArticle

Assessing the severity of psoriasis through multivariate analysis of optical images from non-lesional skin

Žurauskas, M., Barkalifa, R., Alex, A., Marjanovic, M., Spillman, D. R., Mukherjee, P., Neitzel, C. D., Lee, W., Medler, J., Arp, Z., Cleveland, M., Hood, S. & Boppart, S. A., Dec 1 2020, In : Scientific reports. 10, 1, 9154.

Research output: Contribution to journalArticle

Open Access

Assessment of microbial risks by characterization of Escherichia coli presence to analyze the public health risks from poor water quality in Nepal

Uprety, S., Dangol, B., Nakarmi, P., Dhakal, I., Sherchan, S. P., Shisler, J. L., Jutla, A., Amarasiri, M., Sano, D. & Nguyen, T. H., May 2020, In : International Journal of Hygiene and Environmental Health. 226, 113484.

Research output: Contribution to journalArticle

A Staphylococcus pro-apoptotic peptide induces acute exacerbation of pulmonary fibrosis

D’alessandro-gabazza, C. N., Kobayashi, T., Yasuma, T., Toda, M., Kim, H., Fujimoto, H., Hataji, O., Takeshita, A., Nishihama, K., Okano, T., Okano, Y., Nishii, Y., Tomaru, A., Fujiwara, K., D’alessandro, V. F., Abdel-hamid, A. M., Ren, Y., Pereira, G. V., Wright, C. L., Hernandez, A. & 15 others, Fields, C. J., Yau, P. M., Wang, S., Mizoguchi, A., Fukumura, M., Ohtsuka, J., Nosaka, T., Kataoka, K., Kondoh, Y., Wu, J., Kawagishi, H., Yano, Y., Mackie, R. I., Cann, I. & Gabazza, E. C., Mar 24 2020, In : Nature Communications. 11, 1, 1539.

Research output: Contribution to journalArticle

Open Access

Automated fast computational adaptive optics for optical coherence tomography based on a stochastic parallel gradient descent algorithm

Zhu, D., Wang, R., Žurauskas, M., Pande, P., Bi, J., Yuan, Q., Wang, L., Gao, Z. & Boppart, S. A., Aug 3 2020, In : Optics Express. 28, 16, p. 23306-23319 14 p.

Research output: Contribution to journalArticle

Bacteroidetes can be a rich source of novel lanthipeptides: The case study of Pedobacter lusitanus

Caetano, T., van der Donk, W. & Mendo, S., May 2020, In : Microbiological Research. 235, 126441.

Research output: Contribution to journalArticle

Bile acid treatment and FXR agonism lower postprandial lipemia in mice

Farr, S., Stankovic, B., Hoffman, S., Masoudpoor, H., Baker, C., Taher, J., Dean, A. E., Anakk, S. & Adeli, K., 2020, In : American Journal of Physiology - Gastrointestinal and Liver Physiology. 318, 4, p. H682-G693

Research output: Contribution to journalArticle

Biochemical basis for the regulation of biosynthesis of antiparasitics by bacterial hormones

Kapoor, I., Olivares, P. & Nair, S. K., Jun 2020, In : eLife. 9, p. 1-33 33 p., e57824.

Research output: Contribution to journalArticle

Open Access

BMP signaling plays a role in anterior-neural/head development, but not organizer activity, in the gastropod Crepidula fornicata

Lyons, D. C., Perry, K. J., Batzel, G. & Henry, J. Q., Jul 15 2020, In : Developmental Biology. 463, 2, p. 135-157 23 p.

Research output: Contribution to journalArticle

Open Access

Cellular and molecular basis of liver regeneration

Bangru, S. & Kalsotra, A., Apr 2020, In : Seminars in Cell and Developmental Biology. 100, p. 74-87 14 p.

Research output: Contribution to journalReview article

Characterization of a Dehydratase and Methyltransferase in the Biosynthesis of Ribosomally Synthesized and Post-translationally Modified Peptides in Lachnospiraceae

Huo, L., Zhao, X., Acedo, J. Z., Estrada, P., Nair, S. K. & van der Donk, W. A., Jan 15 2020, In : ChemBioChem. 21, 1-2, p. 190-199 10 p.

Research output: Contribution to journalArticle

Characterization of an l -Ascorbate Catabolic Pathway with Unprecedented Enzymatic Transformations

Stack, T. M. M., Morrison, K. N., Dettmer, T. M., Wille, B., Kim, C., Joyce, R., Jermain, M., Naing, Y. T., Bhatti, K., Francisco, B. S., Carter, M. S. & Gerlt, J. A., Jan 29 2020, In : Journal of the American Chemical Society. 142, 4, p. 1657-1661 5 p.

Research output: Contribution to journalArticle

Open Access

Chemistry, Bioengineering, or the Medical Sciences: Where Do Our Manuscripts Come From?

Sweedler, J. V., 2020, (Accepted/In press) In : Analytical chemistry.

Research output: Contribution to journalEditorial

Open Access

Chromatin accessibility and histone acetylation in the regulation of competence in early development

Esmaeili, M., Blythe, S. A., Tobias, J. W., Zhang, K., Yang, J. & Klein, P. S., Jun 1 2020, In : Developmental Biology. 462, 1, p. 20-35 16 p.

Research output: Contribution to journalArticle

Chronic activation of gp1 mglurs leads to distinct refinement of neural network activity through non-canonical p53 and akt signaling

Liu, D. C., Soriano, S., Yook, Y., Lizarazo, S., Eagleman, D. E. & Tsai, N. P., Mar 1 2020, In : eNeuro. 7, 2, ENEURO.0438-19.2020.

Research output: Contribution to journalArticle

Open Access

Chronic in vivo exposure to Helicobacter pylori VacA: Assessing the efficacy of automated and long-term intragastric toxin infusion

Holland, R. L., Bosi, K. D., Harpring, G. H., Luo, J., Wallig, M., Phillips, H. & Blanke, S. R., Dec 1 2020, In : Scientific reports. 10, 1, 9307.

Research output: Contribution to journalArticle

Open Access

Circadian rhythm of redox state regulates membrane excitability in hippocampal CA1 neurons

Naseri Kouzehgarani, G., Bothwell, M. Y. & Gillette, M. U., Jan 1 2020, In : European Journal of Neuroscience. 51, 1, p. 34-46 13 p.

Research output: Contribution to journalArticle

Citrobacter species increase energy harvest by modulating intestinal microbiota in fish: Nondominant species play important functions

Zhang, M. L., Li, M., Sheng, Y., Tan, F., Chen, L., Cann, I., Cann, I., Cann, I., Cann, I. & Du, Z. Y., Jun 2020, In : mSystems. 5, 3, e00303-20.

Research output: Contribution to journalArticle

Open Access

Collagen, stiffness, and adhesion: The evolutionary basis of vertebrate mechanobiology

Tang, V. W., Aug 1 2020, In : Molecular biology of the cell. 31, 17, p. 1823-1834 12 p.

Research output: Contribution to journalReview article

Open Access

Combined Targeting of Estrogen Receptor Alpha and Exportin 1 in Metastatic Breast Cancers

Cotul, E. K., Zuo, Q., Santaliz-Casiano, A., Imir, O. B., Mogol, A. N., Tunc, E., Duong, K., Lee, J. K., Ramesh, R., Odukoya, E., Kesavadas, M. P., Ziogaite, M., Smith, B. P., Mao, C., Shapiro, D. J., Park, B. H., Katzenellenbogen, B. S., Daly, D., Aranda, E., O’Neill, J. D. & 3 others, Walker, C., Landesman, Y. & Madak-Erdogan, Z., Aug 22 2020, In : Cancers. 12, 9, 2397.

Research output: Contribution to journalArticle

Open Access

Comparative pharmacokinetics of Δ9-tetrahydrocannabinol in adolescent and adult male mice

Torrens, A., Vozella, V., Huff, H., McNeil, B., Ahmed, F., Ghidini, A., Mahler, S. V., Huestis, M. A., Das, A. & Piomelli, D., Jul 1 2020, In : Journal of Pharmacology and Experimental Therapeutics. 374, 1, p. 151-160 10 p.

Research output: Contribution to journalArticle

Complementary Oligonucleotide Conjugated Multicolor Carbon Dots for Intracellular Recognition of Biological Events

Srivastava, I., Misra, S. K., Bangru, S., Boateng, K. A., Soares, J. A. N. T., Schwartz-Duval, A. S., Kalsotra, A. & Pan, D., Apr 8 2020, In : ACS Applied Materials and Interfaces. 12, 14, p. 16137-16149 13 p.

Research output: Contribution to journalArticle

Computational Dissection of Membrane Transport at a Microscopic Level

Jiang, T., Wen, P. C., Trebesch, N., Zhao, Z., Pant, S., Kapoor, K., Shekhar, M. & Tajkhorshid, E., Mar 2020, In : Trends in Biochemical Sciences. 45, 3, p. 202-216 15 p.

Research output: Contribution to journalReview article

Confronting Racism in Chemistry Journals

Burrows, C. J., Huang, J., Wang, S., Kim, H. J., Meyer, G. J., Schanze, K., Lee, T. R., Lutkenhaus, J. L., Kaplan, D., Jones, C., Bertozzi, C., Kiessling, L., Mulcahy, M. B., Lindsley, C. W., Finn, M. G., Blum, J. D., Kamat, P., Choi, W., Snyder, S., Aldrich, C. C. & 52 others, Rowan, S., Liu, B., Liotta, D., Weiss, P. S., Zhang, D., Ganesh, K. N., Atwater, H. A., Gooding, J. J., Allen, D. T., Voigt, C. A., Sweedler, J., Schepartz, A., Rotello, V., Lecommandoux, S., Sturla, S. J., Hammes-Schiffer, S., Buriak, J., Steed, J. W., Wu, H., Zimmerman, J., Brooks, B., Savage, P., Tolman, W., Hofmann, T. F., Brennecke, J. F., Holme, T. A., Merz, K. M., Scuseria, G., Jorgensen, W., Georg, G. I., Wang, S., Proteau, P., Yates, J. R., Stang, P., Walker, G. C., Hillmyer, M., Taylor, L. S., Odom, T. W., Carreira, E., Rossen, K., Chirik, P., Miller, S. J., Shea, J. E., McCoy, A., Zanni, M., Hartland, G., Scholes, G., Loo, J. A., Milne, J., Tegen, S. B., Kulp, D. T. & Laskin, J., 2020, (Accepted/In press) In : Journal of Natural Products.

Research output: Contribution to journalReview article

Open Access

Confronting Racism in Chemistry Journals

Burrows, C. J., Huang, J., Wang, S., Kim, H. J., Meyer, G. J., Schanze, K., Lee, T. R., Lutkenhaus, J. L., Kaplan, D., Jones, C., Bertozzi, C., Kiessling, L., Mulcahy, M. B., Lindsley, C. W., Finn, M. G., Blum, J. D., Kamat, P., Choi, W., Snyder, S., Aldrich, C. C. & 52 others, Rowan, S., Liu, B., Liotta, D., Weiss, P. S., Zhang, D., Ganesh, K. N., Atwater, H. A., Gooding, J. J., Allen, D. T., Voigt, C. A., Sweedler, J., Schepartz, A., Rotello, V., Lecommandoux, S., Sturla, S. J., Hammes-Schiffer, S., Buriak, J., Steed, J. W., Wu, H., Zimmerman, J., Brooks, B., Savage, P., Tolman, W., Hofmann, T. F., Brennecke, J. F., Holme, T. A., Merz, K. M., Scuseria, G., Jorgensen, W., Georg, G. I., Wang, S., Proteau, P., Yates, J. R., Stang, P., Walker, G. C., Hillmyer, M., Taylor, L. S., Odom, T. W., Carreira, E., Rossen, K., Chirik, P., Miller, S. J., Shea, J. E., McCoy, A., Zanni, M., Hartland, G., Scholes, G., Loo, J. A., Milne, J., Tegen, S. B., Kulp, D. T. & Laskin, J., 2020, (Accepted/In press) In : Biochemistry.

Research output: Contribution to journalReview article

Open Access

Contribution of fungal and invertebrate communities to wood decay in tropical terrestrial and aquatic habitats

Ferrer, A., Heath, K. D., Canam, T., Flores, H. D. & Dalling, J. W., Sep 1 2020, In : Ecology. 101, 9, e03097.

Research output: Contribution to journalArticle

Controls on Iron Reduction and Biomineralization over Broad Environmental Conditions as Suggested by the Firmicutes Orenia metallireducens Strain Z6

Dong, Y., Sanford, R. A., Boyanov, M. I., Flynn, T. M., O'Loughlin, E. J., Kemner, K. M., George, S., Fouke, K. E., Li, S., Huang, D., Li, S. & Fouke, B. W., Aug 18 2020, In : Environmental science & technology. 54, 16, p. 10128-10140 13 p.

Research output: Contribution to journalArticle