Research Output 1962 2020

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2020

Analysis of MADS-box genes revealed modified flowering gene network and diurnal expression in pineapple

Zhang, X., Fatima, M., Zhou, P., Ma, Q. & Ming, R., Jan 2 2020, In : BMC genomics. 21, 1, 8.

Research output: Contribution to journalArticle

Open Access
Ananas
Gene Regulatory Networks
Genes
Photosynthesis
Circadian Clocks
tundra
ecosystems
Ecosystems
near infrared
Fires

Diversity of metabolite accumulation patterns in inner and outer seed coats of pomegranate: exploring their relationship with genetic mechanisms of seed coat development

Qin, G., Liu, C., Li, J., Qi, Y., Gao, Z., Zhang, X., Yi, X., Pan, H., Ming, R. & Xu, Y., Dec 1 2020, In : Horticulture Research. 7, 1, 10.

Research output: Contribution to journalArticle

Punicaceae
Metabolites
Seed
Seeds
metabolites
Amyelois transitella
Lepidoptera
Pyralidae
Hydrocarbons
hydrocarbons

Fitting different visual models to behavioral patterns of parasitic egg rejection along a natural egg color gradient in a cavity-nesting host species

Manna, T. J., Hanley, D., Honza, M., Capek, M., Rutila, J., Samaš, P., Abolins-Abols, M. & Hauber, M. E., Feb 2020, In : Vision Research. 167, p. 54-59 6 p.

Research output: Contribution to journalArticle

Eggs
Ovum
Color
Egg Shell
Czech Republic

Pheromone Composition and Chemical Ecology of Six Species of Cerambycid Beetles in the Subfamily Lamiinae

Meier, L. R., Zou, Y., Mongold-Diers, J. A., Millar, J. G. & Hanks, L. M., Jan 1 2020, In : Journal of Chemical Ecology. 46, 1, p. 30-39 10 p.

Research output: Contribution to journalArticle

chemical ecology
Pheromones
Beetles
Ecology
pheromone

Photosynthesis in the fleeting shadows: An overlooked opportunity for increasing crop productivity?

Wang, Y., Burgess, S. J., De Becker, E. & Long, S. P., Jan 6 2020, (Accepted/In press) In : The Plant Journal.

Research output: Contribution to journalArticle

Photosynthesis
Carbon
photosynthesis
Ribulose-Bisphosphate Carboxylase
ribulose-bisphosphate carboxylase

Photosynthetic efficiency and mesophyll conductance are unaffected in Arabidopsis thaliana aquaporin knock-out lines

Kromdijk, J., Głowacka, K. & Long, S. P., Jan 1 2020, In : Journal of experimental botany. 71, 1, p. 318-329 12 p.

Research output: Contribution to journalArticle

Open Access
Aquaporins
aquaporins
Chloroplasts
Arabidopsis
mesophyll

Predation differentially structures immature mosquito populations in stormwater ponds

Holmes, C. J. & Cáceres, C. E., Feb 1 2020, In : Ecological Entomology. 45, 1, p. 97-108 12 p.

Research output: Contribution to journalArticle

stormwater
mosquito
Culicidae
pond
predation
Depressaria pastinacella
Pastinaca
psoralens
substrate specificity
Substrate Specificity

The Genome of the Blind Soil-Dwelling and Ancestrally Wingless Dipluran Campodea augens: A Key Reference Hexapod for Studying the Emergence of Insect Innovations

Manni, M., Simao, F. A., Robertson, H. M., Gabaglio, M. A., Waterhouse, R. M., Misof, B., Niehuis, O., Szucsich, N. U. & Zdobnov, E. M., Jan 1 2020, In : Genome biology and evolution. 12, 1, p. 3534-3549 16 p.

Research output: Contribution to journalArticle

Open Access
Campodea augens
Hexapoda
Insects
eclosion
Soil
2019

(S)-Sulcatol Is a Pheromone Component for Two Species of Cerambycid Beetles in the Subfamily Lamiinae

Meier, L. R., Millar, J. G., Mongold-Diers, J. A. & Hanks, L. M., Jun 15 2019, In : Journal of Chemical Ecology. 45, 5-6, p. 447-454 8 p.

Research output: Contribution to journalArticle

Pheromones
Beetles
pheromone
pheromones
beetle

A Comparative Analysis of Anthropogenic CO2 Emissions at City Level Using OCO-2 Observations: A Global Perspective

Fu, P., Xie, Y., Moore, C. E., Myint, S. W. & Bernacchi, C. J., Sep 1 2019, In : Earth's Future. 7, 9, p. 1058-1070 13 p.

Research output: Contribution to journalArticle

Open Access
global perspective
fossil fuel
seasonality
vegetation
carbon

A comparative analysis of complete plastid genomes from Prangos fedtschenkoi and Prangos lipskyi (Apiaceae)

Mustafina, F. U., Yi, D. K., Choi, K., Shin, C. H., Tojibaev, K. S. & Downie, S. R., Jan 2019, In : Ecology and Evolution. 9, 1, p. 364-377 14 p.

Research output: Contribution to journalArticle

Prangos
Apiaceae
plastid
genome
intergenic DNA

A coupled forage-grazer model predicts viability of livestock production and wildlife habitat at the regional scale

Kowal, V. A., Jones, S. M., Keesing, F., Allan, B. F., Schieltz, J. M. & Chaplin-Kramer, R., Dec 1 2019, In : Scientific reports. 9, 1, 19957.

Research output: Contribution to journalArticle

Open Access
Livestock
Ecosystem
Ruminants
Diet

Agricultural management and plant selection interactively affect rhizosphere microbial community structure and nitrogen cycling

Schmidt, J. E., Kent, A. D., Brisson, V. L. & Gaudin, A. C. M., Nov 7 2019, In : Microbiome. 7, 1, 146.

Research output: Contribution to journalArticle

Open Access
Rhizosphere
Nitrogen
Soil
Microbiota
Zea mays

A hybrid de novo genome assembly of the honeybee, Apis mellifera, with chromosome-length scaffolds

Wallberg, A., Bunikis, I., Pettersson, O. V., Mosbech, M. B., Childers, A. K., Evans, J. D., Mikheyev, A. S., Robertson, H. M., Robinson, G. E. & Webster, M. T., Apr 8 2019, In : BMC genomics. 20, 1, 275.

Research output: Contribution to journalArticle

Open Access
Bees
Chromosomes
Chromosome Mapping
Genome
Genomic Structural Variation

Alder distribution and expansion across a tundra hillslope: implications for local N cycling

Salmon, V. G., Breen, A. L., Kumar, J., Lara, M. J., Thornton, P. E., Wullschleger, S. D. & Iversen, C. M., 2019, (Accepted/In press) In : Frontiers in Plant Science.

Research output: Contribution to journalArticle

Open Access
Alnus
tundra
shrublands
savannas
plant communities

Ammonia flux measurements above a corn canopy using relaxed eddy accumulation and a flux gradient system

Nelson, A. J., Lichiheb, N., Koloutsou-Vakakis, S., Rood, M. J., Heuer, M., Myles, L. T., Joo, E., Miller, J. & Bernacchi, C., Jan 15 2019, In : Agricultural and Forest Meteorology. 264, p. 104-113 10 p.

Research output: Contribution to journalArticle

flux measurement
eddy
ammonia
maize
canopy

An Acoustic Password Enhances Auditory Learning in Juvenile Brood Parasitic Cowbirds

Louder, M. I. M., Balakrishnan, C. N., Louder, A. A. N., Driver, R. J., London, S. E. & Hauber, M. E., Dec 2 2019, In : Current Biology. 29, 23, p. 4045-4051.e3

Research output: Contribution to journalArticle

Birds
Music
Acoustics
animal communication
acoustics

Analysis of genetic diversity of lychee (Litchi chinensis Sonn.) and wild forest relatives in the Sapindaceae from Vietnam using microsatellites

Tran, H., Kanzaki, S., Triest, L., Hormaza, I., Kuk, N. J., Ming, R., Bousquet, J., Khasa, D. & Van Damme, P., Dec 1 2019, In : Genetic Resources and Crop Evolution. 66, 8, p. 1653-1669 17 p.

Research output: Contribution to journalArticle

Sapindaceae
Litchi
Litchi chinensis
Vietnam
Microsatellite Repeats

Ancient DNA analysis of a nineteenth century tobacco pipe from a Maryland slave quarter

Schablitsky, J. M., Witt, K. E., Madrigal, J. R., Ellegaard, M. R., Malhi, R. S. & Schroeder, H., May 2019, In : Journal of Archaeological Science. 105, p. 11-18 8 p.

Research output: Contribution to journalArticle

genetic test
slave
nicotine
artifact
nineteenth century

An evaluation of primers for detecting denitrifiers via their functional genes

Ma, Y., Zilles, J. & Kent, A. D., Apr 2019, In : Environmental Microbiology. 21, 4, p. 1196-1210 15 p.

Research output: Contribution to journalArticle

Denitrification
denitrification
Ecology
functional group
gene

Antarctic blackfin icefish genome reveals adaptations to extreme environments

Kim, B. M., Amores, A., Kang, S., Ahn, D. H., Kim, J. H., Kim, I. C., Lee, J. H., Lee, S. G., Lee, H., Lee, J., Kim, H. W., Desvignes, T., Batzel, P., Sydes, J., Titus, T., Wilson, C. A., Catchen, J. M., Warren, W. C., Schartl, M., Detrich, H. W. & 2 others, Postlethwait, J. H. & Park, H., Mar 1 2019, In : Nature Ecology and Evolution. 3, 3, p. 469-478 10 p.

Research output: Contribution to journalArticle

genome
gene
genes
ice damage
biological rhythm

Ant interceptions reveal roles of transport and commodity in identifying biosecurity risk pathways into Australia

Suhr, E. L., O'Dowd, D. J., Suarez, A. V., Cassey, P., Wittmann, T. A., Ross, J. V. & Cope, R. C., Jan 1 2019, In : NeoBiota. 53, p. 1-24 24 p.

Research output: Contribution to journalArticle

Open Access
biosecurity
interception
products and commodities
commodity
ant

Anti-parasitic egg rejection by great reed warblers (Acrocephalus arundinaceus) tracks differences along an eggshell color gradient

Abolins-Abols, M., Hanley, D., Moskát, C., Grim, T. & Hauber, M. E., Sep 2019, In : Behavioural Processes. 166, 103902.

Research output: Contribution to journalArticle

Egg Shell
Songbirds
egg shell
Eggs
Ovum

A physical model-based method for retrieving urban land surface temperatures under cloudy conditions

Fu, P., Xie, Y., Weng, Q., Myint, S., Meacham-Hensold, K. & Bernacchi, C., Sep 1 2019, In : Remote Sensing of Environment. 230, 111191.

Research output: Contribution to journalArticle

physical models
surface temperature
land surface
Mean square error
Temperature

Are we approaching a water ceiling to maize yields in the United States?

Delucia, E. H., Chen, S., Guan, K., Peng, B., Li, Y., Gomez-Casanovas, N., Kantola, I. B., Bernacchi, C., Huang, Y., Long, S. P. & Ort, D. R., Jun 18 2019, In : Ecosphere. 10, 6, e02773.

Research output: Contribution to journalArticle

Open Access
maize
corn
vapor pressure
water
water use efficiency

Assembling and analysis of sanicula orthacantha chloroplast genome

Chen, Z., Yao, X., Downie, S. R. & Wang, Q., Apr 2019, In : Biodiversity Science. 27, 4, p. 366-372 7 p.

Research output: Contribution to journalArticle

Sanicula
chloroplast
genome
gene
genes

Assembly of allele-aware, chromosomal-scale autopolyploid genomes based on Hi-C data

Zhang, X., Zhang, S., Zhao, Q., Ming, R. & Tang, H., Aug 1 2019, In : Nature Plants. 5, 8, p. 833-845 13 p.

Research output: Contribution to journalArticle

autopolyploidy
alleles
genome
chromosomes
diploidy

Assembly of the 373k gene space of the polyploid sugarcane genome reveals reservoirs of functional diversity in the world's leading biomass crop

Souza, G. M., Van Sluys, M. A., Lembke, C. G., Lee, H., Margarido, G. R. A., Hotta, C. T., Gaiarsa, J. W., Diniz, A. L., Oliveira, M. D. M., Ferreira, S. D. S., Nishiyama, M. Y., Ten-Caten, F., Ragagnin, G. T., Andrade, P. D. M., De Souza, R. F., Nicastro, G. G., Pandya, R., Kim, C., Guo, H., Durham, A. M. & 9 others, Carneiro, M. S., Zhang, J., Zhang, X., Zhang, Q., Ming, R., Schatz, M. C., Davidson, B., Paterson, A. H. & Heckerman, D., Dec 6 2019, In : GigaScience. 8, 12, giz129.

Research output: Contribution to journalArticle

Open Access
Saccharum
Polyploidy
Biomass
Crops
Genes

A subsidiary cell-localized glucose transporter promotes stomatal conductance and photosynthesis

Wang, H., Yan, S., Xin, H., Huang, W., Zhang, H., Teng, S., Yu, Y. C., Fernie, A. R., Lu, X., Li, P., Li, S., Zhang, C., Ruan, Y. L., Chen, L. Q. & Langa, Z., Jun 2019, In : Plant Cell. 31, 6, p. 1328-1343 16 p.

Research output: Contribution to journalArticle

glucose transporters
Facilitative Glucose Transport Proteins
Photosynthesis
stomatal conductance
Clustered Regularly Interspaced Short Palindromic Repeats

A subtype of oral, laryngeal, esophageal, and lung, squamous cell carcinoma with high levels of TrkB-T1 neurotrophin receptor mRNA

Zhou, Y., Sinha, S., Schwartz, J. L. & Adami, G. R., Jun 20 2019, In : BMC Cancer. 19, 1, 607.

Research output: Contribution to journalArticle

Open Access
Nerve Growth Factor Receptors
Squamous Cell Carcinoma
Lung
Messenger RNA
Neoplasms

A tale of two genes: Divergent evolutionary fate of haptoglobin and hemopexin in hemoglobinless Antarctic icefishes

Bilyk, K. T., Zhuang, X., Murphy, K. R. & Cheng-De Vries, C-H. C., Jan 1 2019, In : Journal of Experimental Biology. 222, 6, jeb188573.

Research output: Contribution to journalArticle

Open Access
Hemopexin
Haptoglobins
haptoglobins
hemoglobin
Hemoglobins

Automated detection of thermoerosion in permafrost ecosystems using temporally dense Landsat image stacks

Lara, M. J., Chipman, M. L. & Hu, F. S., Feb 2019, In : Remote Sensing of Environment. 221, p. 462-473 12 p.

Research output: Contribution to journalArticle

Permafrost
permafrost
Landsat
Ecosystems
Lakes

Auxin regulation involved in gynoecium morphogenesis of papaya flowers

Zhou, P., Fatima, M., Ma, X., Liu, J. & Ming, R., Dec 1 2019, In : Horticulture Research. 6, 1, 119.

Research output: Contribution to journalArticle

Open Access
Carica
gynoecium
Indoleacetic Acids
papayas
Morphogenesis

Banish hunger on university campuses

Ngumbi, E., Oct 1 2019, In : Nature. 574, 7777, 1 p.

Research output: Contribution to journalArticle

Open Access
Hunger
Food Supply
Nigeria
South Africa
Meals

Bee diversity in tallgrass prairies affected by management and its effects on above- and below-ground resources

Buckles, B. J. & Harmon-Threatt, A. N., Nov 1 2019, In : Journal of Applied Ecology. 56, 11, p. 2443-2453 11 p.

Research output: Contribution to journalArticle

bee
prairie
resource
grazing
floristics

Beyond an ecological ideal gas law

O’Dwyer, J. P., Jan 1 2019, (Accepted/In press) In : Nature Ecology and Evolution.

Research output: Contribution to journalArticle

Bimodal habitat use in brood parasitic Common Cuckoos (Cuculus canorus) revealed by GPS telemetry

Moskát, C., Bán, M., Fülöp, A., Bereczki, J. & Hauber, M. E., Apr 16 2019, In : Auk. 136, 2, uky019.

Research output: Contribution to journalArticle

Open Access
Cuculus canorus
Cuculidae
global positioning systems
telemetry
home range

Biomass yield in a genetically diverse Miscanthus sinensis germplasm panel evaluated at five locations revealed individuals with exceptional potential

Clark, L. V., Dwiyanti, M. S., Anzoua, K. G., Brummer, J. E., Ghimire, B. K., Głowacka, K., Hall, M., Heo, K., Jin, X., Lipka, A. E., Peng, J., Yamada, T., Yoo, J. H., Yu, C. Y., Zhao, H., Long, S. P. & Sacks, E. J., Oct 1 2019, In : GCB Bioenergy. 11, 10, p. 1125-1145 21 p.

Research output: Contribution to journalArticle

Open Access
Miscanthus giganteus
Miscanthus sinensis
germplasm
Biomass
biomass

Black walnut alley cropping is economically competitive with row crops in the Midwest USA

Wolz, K. J. & DeLucia, E. H., Jan 2019, In : Ecological Applications. 29, 1, e01829.

Research output: Contribution to journalArticle

alley cropping
plantation forestry
crop
discount rate
profitability

Bot-Flying

Berenbaum, M., Jun 7 2019, In : American Entomologist. 65, 2, p. 76-78

Research output: Contribution to journalArticle

BSD2 is a Rubisco-specific assembly chaperone, forms intermediary hetero-oligomeric complexes, and is nonlimiting to growth in tobacco

Conlan, B., Birch, R., Kelso, C., Holland, S., De Souza, A. P., Long, S. P., Beck, J. L. & Whitney, S. M., Apr 2019, In : Plant Cell and Environment. 42, 4, p. 1287-1301 15 p.

Research output: Contribution to journalArticle

Ribulose-Bisphosphate Carboxylase
ribulose-bisphosphate carboxylase
Tobacco
tobacco
Growth
Open Access
honeydew
Bombus terrestris
Apidae
Bombus
Aphididae

Bundle sheath chloroplast volume can house sufficient Rubisco to avoid limiting C4 photosynthesis during chilling

Pignon, C. P., Lundgren, M. R., Osborne, C. P. & Long, S. P., Jan 1 2019, In : Journal of experimental botany. 70, 1, p. 357-365 9 p.

Research output: Contribution to journalArticle

Ribulose-Bisphosphate Carboxylase
C4 photosynthesis
Photosynthesis
ribulose-bisphosphate carboxylase
Chloroplasts

Can hot temperatures limit disease transmission? A test of mechanisms in a zooplankton–fungus system

Shocket, M. S., Magnante, A., Duffy, M. A., Cáceres, C. E. & Hall, S. R., Oct 1 2019, In : Functional Ecology. 33, 10, p. 2017-2029 13 p.

Research output: Contribution to journalArticle

disease transmission
parasite
temperature
testing
parasites
Bees
Soil
Pesticides
Food
Proxy

Common Cerambycid Pheromone Components as Attractants for Longhorn Beetles (Cerambycidae) Breeding in Ephemeral Oak Substrates in Northern Europe

Molander, M. A., Winde, I. B., Burman, J., Nyabuga, F. N., Lindblom, T. U. T., Hanks, L. M., Millar, J. G. & Larsson, M. C., Jul 15 2019, In : Journal of Chemical Ecology. 45, 7, p. 537-548 12 p.

Research output: Contribution to journalArticle

Open Access
1-Butanol
attractant
Cerambycidae
Pheromones
Beetles

Comparative analysis of brain and fat body gene splicing patterns in the honey bee, Apis mellifera

Kannan, K., Shook, M., Li, Y., Robinson, G. E. & Ma, J., Jan 1 2019, In : G3: Genes, Genomes, Genetics. 9, 4, p. 1055-1063 9 p.

Research output: Contribution to journalArticle

Open Access
Fat Body
Honey
Bees
Alternative Splicing
Brain