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2020

A generic arboviral model framework for exploring trade-offs between vector control and environmental concerns

Suarez, G. P., Udiani, O., Allan, B. F., Price, C., Ryan, S. J., Lofgren, E., Coman, A., Stone, C. M., Gallos, L. K. & Fefferman, N. H., Apr 7 2020, In : Journal of Theoretical Biology. 490, 110161.

Research output: Contribution to journalArticle

Allele specific expression of Dof genes responding to hormones and abiotic stresses in sugarcane

Cai, M., Lin, J., Li, Z., Lin, Z., Ma, Y., Wang, Y. & Ming, R., Jan 1 2020, In : PloS one. 15, 1, e0227716.

Research output: Contribution to journalArticle

Open Access

Analysis of MADS-box genes revealed modified flowering gene network and diurnal expression in pineapple

Zhang, X., Fatima, M., Zhou, P., Ma, Q. & Ming, R., Jan 2 2020, In : BMC genomics. 21, 1, 8.

Research output: Contribution to journalArticle

Open Access

Cooperation and stability for complex systems in resource-limited environments

Butler, S. & O’Dwyer, J. P., Jan 1 2020, (Accepted/In press) In : Theoretical Ecology.

Research output: Contribution to journalArticle

Diversity of metabolite accumulation patterns in inner and outer seed coats of pomegranate: exploring their relationship with genetic mechanisms of seed coat development

Qin, G., Liu, C., Li, J., Qi, Y., Gao, Z., Zhang, X., Yi, X., Pan, H., Ming, R. & Xu, Y., Dec 1 2020, In : Horticulture Research. 7, 1, 10.

Research output: Contribution to journalArticle

Estimating photosynthetic traits from reflectance spectra: A synthesis of spectral indices, numerical inversion, and partial least square regression

Fu, P., Meacham-Hensold, K., Guan, K., Wu, J. & Bernacchi, C., Jan 1 2020, (Accepted/In press) In : Plant Cell and Environment.

Research output: Contribution to journalArticle

Open Access

Fitting different visual models to behavioral patterns of parasitic egg rejection along a natural egg color gradient in a cavity-nesting host species

Manna, T. J., Hanley, D., Honza, M., Capek, M., Rutila, J., Samaš, P., Abolins-Abols, M. & Hauber, M. E., Feb 2020, In : Vision Research. 167, p. 54-59 6 p.

Research output: Contribution to journalArticle

Genome-wide expression of low temperature response genes in Rosa hybrida L.

dos Reis, M. V., Rouhana, L. V., Sadeque, A., Koga, L., Clough, S. J., Calla, B., Paiva, P. D. D. O. & Korban, S. S., Jan 2020, In : Plant Physiology and Biochemistry. 146, p. 238-248 11 p.

Research output: Contribution to journalArticle

Ice-age persistence and genetic isolation of the disjunct distribution of larch in Alaska

Napier, J. D., Fernandez, M. C., de Lafontaine, G. & Hu, F. S., Jan 1 2020, (Accepted/In press) In : Ecology and Evolution.

Research output: Contribution to journalArticle

Open Access

Light availability and rhizobium variation interactively mediate the outcomes of legume–rhizobium symbiosis

Heath, K. D., Podowski, J. C., Heniff, S., Klinger, C. R., Burke, P. V., Weese, D. J., Yang, W. H. & Lau, J. A., Jan 1 2020, (Accepted/In press) In : American journal of botany.

Research output: Contribution to journalArticle

Open Access

Meta-analysis of honey bee neurogenomic response links Deformed wing virus type A to precocious behavioral maturation

Traniello, I. M., Bukhari, S. A., Kevill, J., Ahmed, A. C., Hamilton, A. R., Naeger, N. L., Schroeder, D. C. & Robinson, G. E., Dec 1 2020, In : Scientific reports. 10, 1, 3101.

Research output: Contribution to journalArticle

Open Access

Pheromone Composition and Chemical Ecology of Six Species of Cerambycid Beetles in the Subfamily Lamiinae

Meier, L. R., Zou, Y., Mongold-Diers, J. A., Millar, J. G. & Hanks, L. M., Jan 1 2020, In : Journal of Chemical Ecology. 46, 1, p. 30-39 10 p.

Research output: Contribution to journalArticle

Photosynthesis across African cassava germplasm is limited by Rubisco and mesophyll conductance at steady state, but by stomatal conductance in fluctuating light

De Souza, A. P., Wang, Y., Orr, D. J., Carmo-Silva, E. & Long, S. P., Mar 1 2020, In : New Phytologist. 225, 6, p. 2498-2512 15 p.

Research output: Contribution to journalArticle

Open Access

Photosynthesis in the fleeting shadows: An overlooked opportunity for increasing crop productivity?

Wang, Y., Burgess, S. J., De Becker, E. & Long, S. P., Jan 6 2020, (Accepted/In press) In : The Plant Journal.

Research output: Contribution to journalArticle

Photosynthetic efficiency and mesophyll conductance are unaffected in Arabidopsis thaliana aquaporin knock-out lines

Kromdijk, J., Głowacka, K. & Long, S. P., Jan 1 2020, In : Journal of experimental botany. 71, 1, p. 318-329 12 p.

Research output: Contribution to journalArticle

Open Access

Plant–environment interactions from the lens of plant stress, reproduction, and mutualisms

Baucom, R. S., Heath, K. D. & Chambers, S. M., Jan 1 2020, (Accepted/In press) In : American journal of botany.

Research output: Contribution to journalArticle

Open Access

Plot-level rapid screening for photosynthetic parameters using proximal hyperspectral imaging

Meacham-hensold, K., Fu, P., Wu, J., Serbin, S., Montes, C. M., Ainsworth, E., Guan, K., Dracup, E., Pederson, T., Driever, S. & Bernacchi, C., Feb 24 2020, (Accepted/In press) In : Journal of experimental botany.

Research output: Contribution to journalArticle

Open Access

Predation differentially structures immature mosquito populations in stormwater ponds

Holmes, C. J. & Cáceres, C. E., Feb 1 2020, In : Ecological Entomology. 45, 1, p. 97-108 12 p.

Research output: Contribution to journalArticle

Shared transcriptional responses to con- and heterospecific behavioral antagonists in a wild songbird

Louder, M. I. M., Lafayette, M., Louder, A. A., Uy, F. M. K., Balakrishnan, C. N., Yasukawa, K. & Hauber, M. E., Mar 5 2020, In : Scientific reports. 10, 1, 4092.

Research output: Contribution to journalArticle

Open Access

The genome of kenaf (Hibiscus cannabinus L.) provides insights into bast fibre and leaf shape biogenesis

Zhang, L., Xu, Y., Zhang, X., Ma, X., Zhang, L., Liao, Z., Zhang, Q., Wan, X., Cheng, Y., Zhang, J., Li, D., Zhang, L., Xu, J., Tao, A., Lin, L., Fang, P., Chen, S., Qi, R., Xu, X., Qi, J. & 1 others, Ming, R., Jan 1 2020, (Accepted/In press) In : Plant Biotechnology Journal.

Research output: Contribution to journalArticle

Open Access

The Genome of the Blind Soil-Dwelling and Ancestrally Wingless Dipluran Campodea augens: A Key Reference Hexapod for Studying the Emergence of Insect Innovations

Manni, M., Simao, F. A., Robertson, H. M., Gabaglio, M. A., Waterhouse, R. M., Misof, B., Niehuis, O., Szucsich, N. U. & Zdobnov, E. M., Jan 1 2020, In : Genome biology and evolution. 12, 1, p. 3534-3549 16 p.

Research output: Contribution to journalArticle

Open Access

Tissue-guided LASSO for prediction of clinical drug response using preclinical samples

Huang, E. W., Bhope, A., Lim, J., Sinha, S. & Emad, A., Jan 1 2020, In : PLoS computational biology. 16, 1, e1007607.

Research output: Contribution to journalArticle

Open Access
2019

(S)-Sulcatol Is a Pheromone Component for Two Species of Cerambycid Beetles in the Subfamily Lamiinae

Meier, L. R., Millar, J. G., Mongold-Diers, J. A. & Hanks, L. M., Jun 15 2019, In : Journal of Chemical Ecology. 45, 5-6, p. 447-454 8 p.

Research output: Contribution to journalArticle

A Comparative Analysis of Anthropogenic CO2 Emissions at City Level Using OCO-2 Observations: A Global Perspective

Fu, P., Xie, Y., Moore, C. E., Myint, S. W. & Bernacchi, C. J., Sep 1 2019, In : Earth's Future. 7, 9, p. 1058-1070 13 p.

Research output: Contribution to journalArticle

Open Access

A comparative analysis of complete plastid genomes from Prangos fedtschenkoi and Prangos lipskyi (Apiaceae)

Mustafina, F. U., Yi, D. K., Choi, K., Shin, C. H., Tojibaev, K. S. & Downie, S. R., Jan 2019, In : Ecology and Evolution. 9, 1, p. 364-377 14 p.

Research output: Contribution to journalArticle

A coupled forage-grazer model predicts viability of livestock production and wildlife habitat at the regional scale

Kowal, V. A., Jones, S. M., Keesing, F., Allan, B. F., Schieltz, J. M. & Chaplin-Kramer, R., Dec 1 2019, In : Scientific reports. 9, 1, 19957.

Research output: Contribution to journalArticle

Open Access

Agricultural management and plant selection interactively affect rhizosphere microbial community structure and nitrogen cycling

Schmidt, J. E., Kent, A. D., Brisson, V. L. & Gaudin, A. C. M., Nov 7 2019, In : Microbiome. 7, 1, 146.

Research output: Contribution to journalArticle

Open Access

A hybrid de novo genome assembly of the honeybee, Apis mellifera, with chromosome-length scaffolds

Wallberg, A., Bunikis, I., Pettersson, O. V., Mosbech, M. B., Childers, A. K., Evans, J. D., Mikheyev, A. S., Robertson, H. M., Robinson, G. E. & Webster, M. T., Apr 8 2019, In : BMC genomics. 20, 1, 275.

Research output: Contribution to journalArticle

Open Access

Alder distribution and expansion across a tundra hillslope: implications for local N cycling

Salmon, V. G., Breen, A. L., Kumar, J., Lara, M. J., Thornton, P. E., Wullschleger, S. D. & Iversen, C. M., 2019, (Accepted/In press) In : Frontiers in Plant Science.

Research output: Contribution to journalArticle

Open Access

Ammonia flux measurements above a corn canopy using relaxed eddy accumulation and a flux gradient system

Nelson, A. J., Lichiheb, N., Koloutsou-Vakakis, S., Rood, M. J., Heuer, M., Myles, L. T., Joo, E., Miller, J. & Bernacchi, C., Jan 15 2019, In : Agricultural and Forest Meteorology. 264, p. 104-113 10 p.

Research output: Contribution to journalArticle

An Acoustic Password Enhances Auditory Learning in Juvenile Brood Parasitic Cowbirds

Louder, M. I. M., Balakrishnan, C. N., Louder, A. A. N., Driver, R. J., London, S. E. & Hauber, M. E., Dec 2 2019, In : Current Biology. 29, 23, p. 4045-4051.e3

Research output: Contribution to journalArticle

Analysis of genetic diversity of lychee (Litchi chinensis Sonn.) and wild forest relatives in the Sapindaceae from Vietnam using microsatellites

Tran, H., Kanzaki, S., Triest, L., Hormaza, I., Kuk, N. J., Ming, R., Bousquet, J., Khasa, D. & Van Damme, P., Dec 1 2019, In : Genetic Resources and Crop Evolution. 66, 8, p. 1653-1669 17 p.

Research output: Contribution to journalArticle

Ancient DNA analysis of a nineteenth century tobacco pipe from a Maryland slave quarter

Schablitsky, J. M., Witt, K. E., Madrigal, J. R., Ellegaard, M. R., Malhi, R. S. & Schroeder, H., May 2019, In : Journal of Archaeological Science. 105, p. 11-18 8 p.

Research output: Contribution to journalArticle

An evaluation of primers for detecting denitrifiers via their functional genes

Ma, Y., Zilles, J. & Kent, A. D., Apr 2019, In : Environmental Microbiology. 21, 4, p. 1196-1210 15 p.

Research output: Contribution to journalArticle

Antarctic blackfin icefish genome reveals adaptations to extreme environments

Kim, B. M., Amores, A., Kang, S., Ahn, D. H., Kim, J. H., Kim, I. C., Lee, J. H., Lee, S. G., Lee, H., Lee, J., Kim, H. W., Desvignes, T., Batzel, P., Sydes, J., Titus, T., Wilson, C. A., Catchen, J. M., Warren, W. C., Schartl, M., Detrich, H. W. & 2 others, Postlethwait, J. H. & Park, H., Mar 1 2019, In : Nature Ecology and Evolution. 3, 3, p. 469-478 10 p.

Research output: Contribution to journalArticle

Ant interceptions reveal roles of transport and commodity in identifying biosecurity risk pathways into Australia

Suhr, E. L., O'Dowd, D. J., Suarez, A. V., Cassey, P., Wittmann, T. A., Ross, J. V. & Cope, R. C., Jan 1 2019, In : NeoBiota. 53, p. 1-24 24 p.

Research output: Contribution to journalArticle

Open Access

Anti-parasitic egg rejection by great reed warblers (Acrocephalus arundinaceus) tracks differences along an eggshell color gradient

Abolins-Abols, M., Hanley, D., Moskát, C., Grim, T. & Hauber, M. E., Sep 2019, In : Behavioural Processes. 166, 103902.

Research output: Contribution to journalArticle

A physical model-based method for retrieving urban land surface temperatures under cloudy conditions

Fu, P., Xie, Y., Weng, Q., Myint, S., Meacham-Hensold, K. & Bernacchi, C., Sep 1 2019, In : Remote Sensing of Environment. 230, 111191.

Research output: Contribution to journalArticle

Are we approaching a water ceiling to maize yields in the United States?

Delucia, E. H., Chen, S., Guan, K., Peng, B., Li, Y., Gomez-Casanovas, N., Kantola, I. B., Bernacchi, C., Huang, Y., Long, S. P. & Ort, D. R., Jun 18 2019, In : Ecosphere. 10, 6, e02773.

Research output: Contribution to journalArticle

Open Access

A species-level taxonomic review and host associations of glyptapanteles (Hymenoptera, Braconidae, Microgastrinae) with an emphasis on 136 new reared species from Costa Rica and Ecuador

Arias-Penna, D. C., Whitfield, J. B., Janzen, D. H., Hallwachs, W., Dyer, L. A., Smith, M. A., Hebert, P. D. N. & Fernández-Triana, J. L., Jan 1 2019, In : ZooKeys. 2019, 890, p. 1-685 685 p.

Research output: Contribution to journalArticle

Open Access

Assembling and analysis of sanicula orthacantha chloroplast genome

Chen, Z., Yao, X., Downie, S. R. & Wang, Q., Apr 2019, In : Biodiversity Science. 27, 4, p. 366-372 7 p.

Research output: Contribution to journalArticle

Assembly of allele-aware, chromosomal-scale autopolyploid genomes based on Hi-C data

Zhang, X., Zhang, S., Zhao, Q., Ming, R. & Tang, H., Aug 1 2019, In : Nature Plants. 5, 8, p. 833-845 13 p.

Research output: Contribution to journalArticle

Assembly of the 373k gene space of the polyploid sugarcane genome reveals reservoirs of functional diversity in the world's leading biomass crop

Souza, G. M., Van Sluys, M. A., Lembke, C. G., Lee, H., Margarido, G. R. A., Hotta, C. T., Gaiarsa, J. W., Diniz, A. L., Oliveira, M. D. M., Ferreira, S. D. S., Nishiyama, M. Y., Ten-Caten, F., Ragagnin, G. T., Andrade, P. D. M., De Souza, R. F., Nicastro, G. G., Pandya, R., Kim, C., Guo, H., Durham, A. M. & 9 others, Carneiro, M. S., Zhang, J., Zhang, X., Zhang, Q., Ming, R., Schatz, M. C., Davidson, B., Paterson, A. H. & Heckerman, D., Dec 6 2019, In : GigaScience. 8, 12, giz129.

Research output: Contribution to journalArticle

Open Access

A subsidiary cell-localized glucose transporter promotes stomatal conductance and photosynthesis

Wang, H., Yan, S., Xin, H., Huang, W., Zhang, H., Teng, S., Yu, Y. C., Fernie, A. R., Lu, X., Li, P., Li, S., Zhang, C., Ruan, Y. L., Chen, L. Q. & Langa, Z., Jun 2019, In : Plant Cell. 31, 6, p. 1328-1343 16 p.

Research output: Contribution to journalArticle

A subtype of oral, laryngeal, esophageal, and lung, squamous cell carcinoma with high levels of TrkB-T1 neurotrophin receptor mRNA

Zhou, Y., Sinha, S., Schwartz, J. L. & Adami, G. R., Jun 20 2019, In : BMC Cancer. 19, 1, 607.

Research output: Contribution to journalArticle

Open Access

A tale of two genes: Divergent evolutionary fate of haptoglobin and hemopexin in hemoglobinless Antarctic icefishes

Bilyk, K. T., Zhuang, X., Murphy, K. R. & Cheng-De Vries, C-H. C., Jan 1 2019, In : Journal of Experimental Biology. 222, 6, jeb188573.

Research output: Contribution to journalArticle

Open Access

Automated detection of thermoerosion in permafrost ecosystems using temporally dense Landsat image stacks

Lara, M. J., Chipman, M. L. & Hu, F. S., Feb 2019, In : Remote Sensing of Environment. 221, p. 462-473 12 p.

Research output: Contribution to journalArticle