Research Output

2020

A generic arboviral model framework for exploring trade-offs between vector control and environmental concerns

Suarez, G. P., Udiani, O., Allan, B. F., Price, C., Ryan, S. J., Lofgren, E., Coman, A., Stone, C. M., Gallos, L. K. & Fefferman, N. H., Apr 7 2020, In : Journal of Theoretical Biology. 490, 110161.

Research output: Contribution to journalArticle

Allele specific expression of Dof genes responding to hormones and abiotic stresses in sugarcane

Cai, M., Lin, J., Li, Z., Lin, Z., Ma, Y., Wang, Y. & Ming, R., Jan 1 2020, In : PloS one. 15, 1, e0227716.

Research output: Contribution to journalArticle

Open Access

Analysis of MADS-box genes revealed modified flowering gene network and diurnal expression in pineapple

Zhang, X., Fatima, M., Zhou, P., Ma, Q. & Ming, R., Jan 2 2020, In : BMC genomics. 21, 1, 8.

Research output: Contribution to journalArticle

Open Access

A wish list for synthetic biology in photosynthesis research

Zhu, X. G., Ort, D. R., Parry, M. A. J. & Von Caemmerer, S., Apr 6 2020, In : Journal of experimental botany. 71, 7, p. 2219-2225 7 p.

Research output: Contribution to journalArticle

Open Access

Bee-Inspired Evaluation Algorithm Leads to Improved Decision Making in Groups

Sturgis, M. & Alleyne, M., Mar 2020, In : IEEE Systems Journal. 14, 1, p. 1427-1434 8 p., 8721459.

Research output: Contribution to journalArticle

Beyond an ecological ideal gas law

O’Dwyer, J. P., Jan 1 2020, In : Nature Ecology and Evolution. 4, 1, p. 14-15 2 p.

Research output: Contribution to journalComment/debate

Brown marmorated stink bug, Halyomorpha halys (Stål), genome: Putative underpinnings of polyphagy, insecticide resistance potential and biology of a top worldwide pest

Sparks, M. E., Bansal, R., Benoit, J. B., Blackburn, M. B., Chao, H., Chen, M., Cheng, S., Childers, C., Dinh, H., Doddapaneni, H. V., Dugan, S., Elpidina, E. N., Farrow, D. W., Friedrich, M., Gibbs, R. A., Hall, B., Han, Y., Hardy, R. W., Holmes, C. J., Hughes, D. S. T. & 37 others, Ioannidis, P., Cheatle Jarvela, A. M., Johnston, J. S., Jones, J. W., Kronmiller, B. A., Kung, F., Lee, S. L., Martynov, A. G., Masterson, P., Maumus, F., Munoz-Torres, M., Murali, S. C., Murphy, T. D., Muzny, D. M., Nelson, D. R., Oppert, B., Panfilio, K. A., Paula, D. P., Pick, L., Poelchau, M. F., Qu, J., Reding, K., Rhoades, J. H., Rhodes, A., Richards, S., Richter, R., Robertson, H. M., Rosendale, A. J., Tu, Z. J., Velamuri, A. S., Waterhouse, R. M., Weirauch, M. T., Wells, J. T., Werren, J. H., Worley, K. C., Zdobnov, E. M. & Gundersen-Rindal, D. E., Mar 14 2020, In : BMC genomics. 21, 1, 227.

Research output: Contribution to journalArticle

Open Access

Civil disobedience movements such as School Strike for the Climate are raising public awareness of the climate change emergency

Thackeray, S. J., Robinson, S. A., Smith, P., Bruno, R., Kirschbaum, M. U. F., Bernacchi, C., Byrne, M., Cheung, W., Cotrufo, M. F., Gienapp, P., Hartley, S., Janssens, I., Hefin Jones, T., Kobayashi, K., Luo, Y., Penuelas, J., Sage, R., Suggett, D. J., Way, D. & Long, S., Jan 1 2020, (Accepted/In press) In : Global change biology.

Research output: Contribution to journalEditorial

Open Access

Cooperation and stability for complex systems in resource-limited environments

Butler, S. & O’Dwyer, J. P., Jan 1 2020, (Accepted/In press) In : Theoretical Ecology.

Research output: Contribution to journalArticle

Co-producing knowledge: the Integrated Ecosystem Model for resource management in Arctic Alaska

Euskirchen, E. S., Timm, K., Breen, A. L., Gray, S., Rupp, T. S., Martin, P., Reynolds, J. H., Sesser, A., Murphy, K., Littell, J. S., Bennett, A., Bolton, W. R., Carman, T., Genet, H., Griffith, B., Kurkowski, T., Lara, M. J., Marchenko, S., Nicolsky, D., Panda, S. & 4 others, Romanovsky, V., Rutter, R., Tucker, C. L. & McGuire, A. D., Jan 1 2020, (Accepted/In press) In : Frontiers in Ecology and the Environment.

Research output: Contribution to journalArticle

Counting niches: Abundance-by-trait patterns reveal niche partitioning in a Neotropical forest

D’Andrea, R., Guittar, J., O’Dwyer, J. P., Figueroa, H., Wright, S. J., Condit, R. & Ostling, A., Jan 1 2020, (Accepted/In press) In : Ecology.

Research output: Contribution to journalArticle

Deriving high-spatiotemporal-resolution leaf area index for agroecosystems in the U.S. Corn Belt using Planet Labs CubeSat and STAIR fusion data

Kimm, H., Guan, K., Jiang, C., Peng, B., Gentry, L. F., Wilkin, S. C., Wang, S., Cai, Y., Bernacchi, C. J., Peng, J. & Luo, Y., Mar 15 2020, In : Remote Sensing of Environment. 239, 111615.

Research output: Contribution to journalArticle

Development but not diet alters microbial communities in the Neotropical arboreal trap jaw ant Daceton armigerum: an exploratory study

Ramalho, M. O., Duplais, C., Orivel, J., Dejean, A., Gibson, J. C., Suarez, A. V. & Moreau, C. S., Dec 1 2020, In : Scientific reports. 10, 1, 7350.

Research output: Contribution to journalArticle

Open Access

Diversity of metabolite accumulation patterns in inner and outer seed coats of pomegranate: exploring their relationship with genetic mechanisms of seed coat development

Qin, G., Liu, C., Li, J., Qi, Y., Gao, Z., Zhang, X., Yi, X., Pan, H., Ming, R. & Xu, Y., Dec 1 2020, In : Horticulture Research. 7, 1, 10.

Research output: Contribution to journalArticle

Effects of predation risk on egg steroid profiles across multiple populations of threespine stickleback

McGhee, K. E., Paitz, R. T., Baker, J. A., Foster, S. A. & Bell, A. M., Dec 1 2020, In : Scientific reports. 10, 1, 5239.

Research output: Contribution to journalArticle

Open Access

Enhanced El Niño–Southern Oscillation Variability in Recent Decades

Grothe, P. R., Cobb, K. M., Liguori, G., Di Lorenzo, E., Capotondi, A., Lu, Y., Cheng, H., Edwards, R. L., Southon, J. R., Santos, G. M., Deocampo, D. M., Lynch-Stieglitz, J., Chen, T., Sayani, H. R., Thompson, D. M., Conroy, J. L., Moore, A. L., Townsend, K., Hagos, M., O'Connor, G. & 1 others, Toth, L. T., Apr 16 2020, In : Geophysical Research Letters. 47, 7, e2019GL083906.

Research output: Contribution to journalLetter

Estimating photosynthetic traits from reflectance spectra: A synthesis of spectral indices, numerical inversion, and partial least square regression

Fu, P., Meacham-Hensold, K., Guan, K., Wu, J. & Bernacchi, C., Jan 1 2020, (Accepted/In press) In : Plant Cell and Environment.

Research output: Contribution to journalArticle

Open Access

Exerting an influence on evolution

Roseman, C. C., Mar 25 2020, In : eLife. 9

Research output: Contribution to journalArticle

Open Access

Fitting different visual models to behavioral patterns of parasitic egg rejection along a natural egg color gradient in a cavity-nesting host species

Manna, T. J., Hanley, D., Honza, M., Capek, M., Rutila, J., Samaš, P., Abolins-Abols, M. & Hauber, M. E., Feb 2020, In : Vision Research. 167, p. 54-59 6 p.

Research output: Contribution to journalArticle

From eDNA to citizen science: emerging tools for the early detection of invasive species

Larson, E. R., Graham, B. M., Achury, R., Coon, J. J., Daniels, M. K., Gambrell, D. K., Jonasen, K. L., King, G. D., LaRacuente, N., Perrin-Stowe, T. I. N., Reed, E. M., Rice, C. J., Ruzi, S. A., Thairu, M. W., Wilson, J. C. & Suarez, A. V., Jan 1 2020, (Accepted/In press) In : Frontiers in Ecology and the Environment.

Research output: Contribution to journalReview article

Genome-wide expression of low temperature response genes in Rosa hybrida L.

dos Reis, M. V., Rouhana, L. V., Sadeque, A., Koga, L., Clough, S. J., Calla, B., Paiva, P. D. D. O. & Korban, S. S., Jan 2020, In : Plant Physiology and Biochemistry. 146, p. 238-248 11 p.

Research output: Contribution to journalArticle

Genome-Wide Identification and Expression Profile Analysis of WRKY Family Genes in the Autopolyploid Saccharum spontaneum

Li, Z., Hua, X., Zhong, W., Yuan, Y., Wang, Y., Wang, Z., Ming, R. & Zhang, J., Mar 1 2020, In : Plant & cell physiology. 61, 3, p. 616-630 15 p.

Research output: Contribution to journalArticle

Genomic resources for darters (Percidae: Etheostominae) provide insight into postzygotic barriers implicated in speciation

Moran, R. L., Catchen, J. M. & Fuller, R. C., Mar 1 2020, In : Molecular biology and evolution. 37, 3, p. 711-729 19 p., msz260.

Research output: Contribution to journalArticle

Open Access

Global shape of Toll activation is determined by wntD enhancer properties

Rahimi, N., Carmon, S., Averbukh, I., Khajouei, F., Sinha, S., Schejter, E. D., Barkai, N. & Shilo, B. Z., Jan 21 2020, In : Proceedings of the National Academy of Sciences of the United States of America. 117, 3, p. 1552-1558 7 p.

Research output: Contribution to journalArticle

Global trends in bumble bee health

Cameron, S. A. & Sadd, B. M., Jan 1 2020, In : Annual Review of Entomology. 65, p. 209-232 24 p.

Research output: Contribution to journalReview article

Guidelines for including bamboos in tropical ecosystem monitoring

Fadrique, B., Veldman, J. W., Dalling, J. W., Clark, L. G., Montti, L., Ruiz-Sanchez, E., Rother, D. C., Ely, F., Farfan-Ríos, W., Gagnon, P., Prada, C. M., Camargo García, J. C., Saha, S., Veblen, T. T., Londoño, X., Feeley, K. J. & Rockwell, C. A., Jan 1 2020, (Accepted/In press) In : Biotropica.

Research output: Contribution to journalArticle

Heterospecific eavesdropping on an anti-parasitic referential alarm call

Lawson, S. L., Enos, J. K., Mendes, N. C., Gill, S. A. & Hauber, M. E., Mar 31 2020, In : Communications Biology. 3, 1, 143.

Research output: Contribution to journalArticle

Open Access

Hierarchical detection of diverse Clade II (atypical) nosZ genes using new primer sets for classical- and multiplex PCR array applications

Chee-Sanford, J. C., Connor, L., Krichels, A., Yang, W. H. & Sanford, R. A., May 2020, In : Journal of Microbiological Methods. 172, 105908.

Research output: Contribution to journalArticle

Honey bee virus causes context-dependent changes in host social behavior

Geffre, A. C., Gernat, T., Harwood, G. P., Jones, B. M., Morselli Gysi, D., Hamilton, A. R., Bonning, B. C., Toth, A. L., Robinson, G. E. & Dolezal, A. G., May 12 2020, In : PNAS. 117, 19, p. 10406-10413 8 p.

Research output: Contribution to journalArticle

Ice-age persistence and genetic isolation of the disjunct distribution of larch in Alaska

Napier, J. D., Fernandez, M. C., de Lafontaine, G. & Hu, F. S., Jan 1 2020, (Accepted/In press) In : Ecology and Evolution.

Research output: Contribution to journalArticle

Open Access

Identifying historical and future potential lake drainage events on the western Arctic coastal plain of Alaska

Jones, B. M., Arp, C. D., Grosse, G., Nitze, I., Lara, M. J., Whitman, M. S., Farquharson, L. M., Kanevskiy, M., Parsekian, A. D., Breen, A. L., Ohara, N., Rangel, R. C. & Hinkel, K. M., Jan 1 2020, In : Permafrost and Periglacial Processes. 31, 1, p. 110-127 18 p.

Research output: Contribution to journalArticle

Open Access

Impacts of directed evolution and soil management legacy on the maize rhizobiome

Schmidt, J. E., Mazza Rodrigues, J. L., Brisson, V. L., Kent, A. & Gaudin, A. C. M., Jun 2020, In : Soil Biology and Biochemistry. 145, 107794.

Research output: Contribution to journalArticle

Influence of nesting characteristics on health of wild bee communities

Harmon-Threatt, A., Jan 1 2020, In : Annual Review of Entomology. 65, p. 39-56 18 p.

Research output: Contribution to journalReview article

Open Access

Innovation and decreased neophobia drive invasion success in a widespread avian invader

Magory Cohen, T., Kumar, R. S., Nair, M., Hauber, M. E. & Dor, R., May 2020, In : Animal Behaviour. 163, p. 61-72 12 p.

Research output: Contribution to journalArticle

Intraspecific variation in resource use is not explained by population persistence or seasonality

Crawford, J. W., Schrader, M., Hall, S. R. & Cáceres, C. E., Jan 1 2020, (Accepted/In press) In : Oecologia.

Research output: Contribution to journalArticle

Knowledge-guided analysis of "omics" data using the KnowEnG cloud platform

Blatti, C., Emad, A., Berry, M. J., Gatzke, L., Epstein, M., Lanier, D., Rizal, P., Ge, J., Liao, X., Sobh, O., Lambert, M., Post, C. S., Xiao, J., Groves, P., Epstein, A. T., Chen, X., Srinivasan, S., Lehnert, E., Kalari, K. R., Wang, L. & 8 others, Weinshilboum, R. M., Song, J. S., Jongeneel, C. V., Han, J., Ravaioli, U., Sobh, N., Bushell, C. B. & Sinha, S., Jan 1 2020, In : PLoS biology. 18, 1, e3000583.

Research output: Contribution to journalArticle

Open Access

Light availability and rhizobium variation interactively mediate the outcomes of legume–rhizobium symbiosis

Heath, K. D., Podowski, J. C., Heniff, S., Klinger, C. R., Burke, P. V., Weese, D. J., Yang, W. H. & Lau, J. A., Jan 1 2020, (Accepted/In press) In : American journal of botany.

Research output: Contribution to journalArticle

Open Access

Looking back to look ahead: a vision for soil denitrification research

Almaraz, M., Wong, M. Y. & Yang, W. H., Jan 1 2020, In : Ecology. 101, 1, e02917.

Research output: Contribution to journalArticle

Open Access

Meta-analysis of honey bee neurogenomic response links Deformed wing virus type A to precocious behavioral maturation

Traniello, I. M., Bukhari, S. A., Kevill, J., Ahmed, A. C., Hamilton, A. R., Naeger, N. L., Schroeder, D. C. & Robinson, G. E., Dec 1 2020, In : Scientific reports. 10, 1, 3101.

Research output: Contribution to journalArticle

Open Access

Molecular and Topographical Organization: Influence on Cicada Wing Wettability and Bactericidal Properties

Román-Kustas, J., Hoffman, J. B., Reed, J. H., Gonsalves, A. E., Oh, J., Li, L., Hong, S., Jo, K. D., Dana, C. E., Miljkovic, N., Cropek, D. M. & Alleyne, M., Jan 1 2020, (Accepted/In press) In : Advanced Materials Interfaces.

Research output: Contribution to journalArticle

Open Access

Multiscale computational models can guide experimentation and targeted measurements for crop improvement

Benes, B., Guan, K., Lang, M., Long, S. P., Lynch, J. P., Marshall-Colón, A., Peng, B., Schnable, J., Sweetlove, L. J. & Turk, M. J., Jan 1 2020, (Accepted/In press) In : Plant Journal.

Research output: Contribution to journalArticle

Novel bayesian networks for genomic prediction of developmental traits in biomass sorghum

Dos Santos, J. P. R., Fernandes, S. B., McCoy, S., Lozano, R., Brown, P. J., Leakey, A. D. B., Buckler, E. S., Garcia, A. A. F. & Gore, M. A., Feb 1 2020, In : G3: Genes, Genomes, Genetics. 10, 2, p. 769-781 13 p.

Research output: Contribution to journalArticle

Open Access

Nutrient addition increases grassland sensitivity to droughts

Bharath, S., Borer, E. T., Biederman, L. A., Blumenthal, D. M., Fay, P. A., Gherardi, L. A., Knops, J. M. H., Leakey, A. D. B., Yahdjian, L. & Seabloom, E. W., Jan 1 2020, (Accepted/In press) In : Ecology. e02981.

Research output: Contribution to journalArticle

Open Access