Research Output 1962 2020

2020

A generic arboviral model framework for exploring trade-offs between vector control and environmental concerns

Suarez, G. P., Udiani, O., Allan, B. F., Price, C., Ryan, S. J., Lofgren, E., Coman, A., Stone, C. M., Gallos, L. K. & Fefferman, N. H., Apr 7 2020, In : Journal of Theoretical Biology. 490, 110161.

Research output: Contribution to journalArticle

Zika virus
Vector Control
vector control
Trade-offs
public health

Allele specific expression of Dof genes responding to hormones and abiotic stresses in sugarcane

Cai, M., Lin, J., Li, Z., Lin, Z., Ma, Y., Wang, Y. & Ming, R., Jan 1 2020, In : PloS one. 15, 1, e0227716.

Research output: Contribution to journalArticle

Open Access
Saccharum
abiotic stress
sugarcane
Genes
Alleles

Analysis of MADS-box genes revealed modified flowering gene network and diurnal expression in pineapple

Zhang, X., Fatima, M., Zhou, P., Ma, Q. & Ming, R., Jan 2 2020, In : BMC genomics. 21, 1, 8.

Research output: Contribution to journalArticle

Open Access
Ananas
Gene Regulatory Networks
Genes
Photosynthesis
Circadian Clocks
tundra
ecosystems
Ecosystems
near infrared
Fires
Open Access
Amyelois transitella
chemical ecology
Lepidoptera
research support
Pyralidae

Civil disobedience movements such as School Strike for the Climate are raising public awareness of the climate change emergency

Thackeray, S. J., Robinson, S. A., Smith, P., Bruno, R., Kirschbaum, M. U. F., Bernacchi, C., Byrne, M., Cheung, W., Cotrufo, M. F., Gienapp, P., Hartley, S., Janssens, I., Hefin Jones, T., Kobayashi, K., Luo, Y., Penuelas, J., Sage, R., Suggett, D. J., Way, D. & Long, S., Jan 1 2020, (Accepted/In press) In : Global change biology.

Research output: Contribution to journalEditorial

Open Access

Cooperation and stability for complex systems in resource-limited environments

Butler, S. & O’Dwyer, J. P., Jan 1 2020, (Accepted/In press) In : Theoretical Ecology.

Research output: Contribution to journalArticle

resource
coexistence
co-operation

Diversity of metabolite accumulation patterns in inner and outer seed coats of pomegranate: exploring their relationship with genetic mechanisms of seed coat development

Qin, G., Liu, C., Li, J., Qi, Y., Gao, Z., Zhang, X., Yi, X., Pan, H., Ming, R. & Xu, Y., Dec 1 2020, In : Horticulture Research. 7, 1, 10.

Research output: Contribution to journalArticle

Punicaceae
Metabolites
Seed
Seeds
metabolites
Amyelois transitella
Lepidoptera
Pyralidae
Hydrocarbons
hydrocarbons

Fitting different visual models to behavioral patterns of parasitic egg rejection along a natural egg color gradient in a cavity-nesting host species

Manna, T. J., Hanley, D., Honza, M., Capek, M., Rutila, J., Samaš, P., Abolins-Abols, M. & Hauber, M. E., Feb 2020, In : Vision Research. 167, p. 54-59 6 p.

Research output: Contribution to journalArticle

Eggs
Ovum
Color
Egg Shell
Czech Republic

Global trends in bumble bee health

Cameron, S. A. & Sadd, B. M., Jan 1 2020, In : Annual Review of Entomology. 65, p. 209-232 24 p.

Research output: Contribution to journalReview article

Bombus
bee
population decline
explosions
habitat loss

Ice-age persistence and genetic isolation of the disjunct distribution of larch in Alaska

Napier, J. D., Fernandez, M. C., de Lafontaine, G. & Hu, F. S., Jan 1 2020, (Accepted/In press) In : Ecology and Evolution.

Research output: Contribution to journalArticle

Open Access
genetic isolation
disjunct distribution
ice
Last Glacial Maximum
persistence

Pheromone Composition and Chemical Ecology of Six Species of Cerambycid Beetles in the Subfamily Lamiinae

Meier, L. R., Zou, Y., Mongold-Diers, J. A., Millar, J. G. & Hanks, L. M., Jan 1 2020, In : Journal of Chemical Ecology. 46, 1, p. 30-39 10 p.

Research output: Contribution to journalArticle

chemical ecology
Pheromones
Beetles
Ecology
pheromone

Photosynthesis in the fleeting shadows: An overlooked opportunity for increasing crop productivity?

Wang, Y., Burgess, S. J., De Becker, E. & Long, S. P., Jan 6 2020, (Accepted/In press) In : The Plant Journal.

Research output: Contribution to journalArticle

Photosynthesis
Carbon
photosynthesis
Ribulose-Bisphosphate Carboxylase
ribulose-bisphosphate carboxylase

Photosynthetic efficiency and mesophyll conductance are unaffected in Arabidopsis thaliana aquaporin knock-out lines

Kromdijk, J., Głowacka, K. & Long, S. P., Jan 1 2020, In : Journal of experimental botany. 71, 1, p. 318-329 12 p.

Research output: Contribution to journalArticle

Open Access
Aquaporins
aquaporins
Chloroplasts
Arabidopsis
mesophyll

Predation differentially structures immature mosquito populations in stormwater ponds

Holmes, C. J. & Cáceres, C. E., Feb 1 2020, In : Ecological Entomology. 45, 1, p. 97-108 12 p.

Research output: Contribution to journalArticle

stormwater
mosquito
Culicidae
pond
predation
Depressaria pastinacella
Pastinaca
psoralens
substrate specificity
Substrate Specificity

The genome of kenaf (Hibiscus cannabinus L.) provides insights into bast fibre and leaf shape biogenesis

Zhang, L., Xu, Y., Zhang, X., Ma, X., Zhang, L., Liao, Z., Zhang, Q., Wan, X., Cheng, Y., Zhang, J., Li, D., Zhang, L., Xu, J., Tao, A., Lin, L., Fang, P., Chen, S., Qi, R., Xu, X., Qi, J. & 1 others, Ming, R., Jan 1 2020, (Accepted/In press) In : Plant Biotechnology Journal.

Research output: Contribution to journalArticle

Open Access
Hibiscus
Hibiscus cannabinus
kenaf
Genome
genome

The Genome of the Blind Soil-Dwelling and Ancestrally Wingless Dipluran Campodea augens: A Key Reference Hexapod for Studying the Emergence of Insect Innovations

Manni, M., Simao, F. A., Robertson, H. M., Gabaglio, M. A., Waterhouse, R. M., Misof, B., Niehuis, O., Szucsich, N. U. & Zdobnov, E. M., Jan 1 2020, In : Genome biology and evolution. 12, 1, p. 3534-3549 16 p.

Research output: Contribution to journalArticle

Open Access
Campodea augens
Hexapoda
Insects
eclosion
Soil

The influence of rising tropospheric carbon dioxide and ozone on plant productivity

Ainsworth, E. A., Lemonnier, P. & Wedow, J. M., Jan 1 2020, In : Plant Biology. 22, S1, p. 5-11 7 p.

Research output: Contribution to journalReview article

Open Access
ozone
carbon dioxide
productivity
terrestrial ecosystem
pollutants

The role of cis-elements in the evolution of crassulacean acid metabolism photosynthesis

Chen, L. Y., Xin, Y., Wai, C. M., Liu, J. & Ming, R., Dec 1 2020, In : Horticulture Research. 7, 1, 5.

Research output: Contribution to journalReview article

Open Access
Crassulacean acid metabolism
Photosynthesis
Metabolism
photosynthesis
Acids

Tissue-guided LASSO for prediction of clinical drug response using preclinical samples

Huang, E. W., Bhope, A., Lim, J., Sinha, S. & Emad, A., Jan 1 2020, In : PLoS computational biology. 16, 1, e1007607.

Research output: Contribution to journalArticle

Open Access
Drugs
drug
Tissue
drugs
prediction

Transgenerational Plasticity in Human-Altered Environments

Donelan, S. C., Hellmann, J. K., Bell, A. M., Luttbeg, B., Orrock, J. L., Sheriff, M. J. & Sih, A., Feb 2020, In : Trends in Ecology and Evolution. 35, 2, p. 115-124 10 p.

Research output: Contribution to journalReview article

plasticity
environmental change
fitness
phenotype
environmental conditions

Twenty-five years of GCB: Putting the biology into global change

Long, S. P., Jan 1 2020, In : Global change biology. 26, 1, p. 1-2 2 p.

Research output: Contribution to journalEditorial

Open Access
2019

(S)-Sulcatol Is a Pheromone Component for Two Species of Cerambycid Beetles in the Subfamily Lamiinae

Meier, L. R., Millar, J. G., Mongold-Diers, J. A. & Hanks, L. M., Jun 15 2019, In : Journal of Chemical Ecology. 45, 5-6, p. 447-454 8 p.

Research output: Contribution to journalArticle

Pheromones
Beetles
pheromone
pheromones
beetle

A Comparative Analysis of Anthropogenic CO2 Emissions at City Level Using OCO-2 Observations: A Global Perspective

Fu, P., Xie, Y., Moore, C. E., Myint, S. W. & Bernacchi, C. J., Sep 1 2019, In : Earth's Future. 7, 9, p. 1058-1070 13 p.

Research output: Contribution to journalArticle

Open Access
global perspective
fossil fuel
seasonality
vegetation
carbon

A comparative analysis of complete plastid genomes from Prangos fedtschenkoi and Prangos lipskyi (Apiaceae)

Mustafina, F. U., Yi, D. K., Choi, K., Shin, C. H., Tojibaev, K. S. & Downie, S. R., Jan 2019, In : Ecology and Evolution. 9, 1, p. 364-377 14 p.

Research output: Contribution to journalArticle

Prangos
Apiaceae
plastid
genome
intergenic DNA

A coupled forage-grazer model predicts viability of livestock production and wildlife habitat at the regional scale

Kowal, V. A., Jones, S. M., Keesing, F., Allan, B. F., Schieltz, J. M. & Chaplin-Kramer, R., Dec 1 2019, In : Scientific reports. 9, 1, 19957.

Research output: Contribution to journalArticle

Open Access
Livestock
Ecosystem
Ruminants
Diet

Agricultural management and plant selection interactively affect rhizosphere microbial community structure and nitrogen cycling

Schmidt, J. E., Kent, A. D., Brisson, V. L. & Gaudin, A. C. M., Nov 7 2019, In : Microbiome. 7, 1, 146.

Research output: Contribution to journalArticle

Open Access
Rhizosphere
Nitrogen
Soil
Microbiota
Zea mays

A hybrid de novo genome assembly of the honeybee, Apis mellifera, with chromosome-length scaffolds

Wallberg, A., Bunikis, I., Pettersson, O. V., Mosbech, M. B., Childers, A. K., Evans, J. D., Mikheyev, A. S., Robertson, H. M., Robinson, G. E. & Webster, M. T., Apr 8 2019, In : BMC genomics. 20, 1, 275.

Research output: Contribution to journalArticle

Open Access
Bees
Chromosomes
Chromosome Mapping
Genome
Genomic Structural Variation

Alder distribution and expansion across a tundra hillslope: implications for local N cycling

Salmon, V. G., Breen, A. L., Kumar, J., Lara, M. J., Thornton, P. E., Wullschleger, S. D. & Iversen, C. M., 2019, (Accepted/In press) In : Frontiers in Plant Science.

Research output: Contribution to journalArticle

Open Access
Alnus
tundra
shrublands
savannas
plant communities

Ammonia flux measurements above a corn canopy using relaxed eddy accumulation and a flux gradient system

Nelson, A. J., Lichiheb, N., Koloutsou-Vakakis, S., Rood, M. J., Heuer, M., Myles, L. T., Joo, E., Miller, J. & Bernacchi, C., Jan 15 2019, In : Agricultural and Forest Meteorology. 264, p. 104-113 10 p.

Research output: Contribution to journalArticle

flux measurement
eddy
ammonia
maize
canopy

An Acoustic Password Enhances Auditory Learning in Juvenile Brood Parasitic Cowbirds

Louder, M. I. M., Balakrishnan, C. N., Louder, A. A. N., Driver, R. J., London, S. E. & Hauber, M. E., Dec 2 2019, In : Current Biology. 29, 23, p. 4045-4051.e3

Research output: Contribution to journalArticle

Birds
Music
Acoustics
animal communication
acoustics

Analysis of genetic diversity of lychee (Litchi chinensis Sonn.) and wild forest relatives in the Sapindaceae from Vietnam using microsatellites

Tran, H., Kanzaki, S., Triest, L., Hormaza, I., Kuk, N. J., Ming, R., Bousquet, J., Khasa, D. & Van Damme, P., Dec 1 2019, In : Genetic Resources and Crop Evolution. 66, 8, p. 1653-1669 17 p.

Research output: Contribution to journalArticle

Sapindaceae
Litchi
Litchi chinensis
Vietnam
Microsatellite Repeats

Ancient DNA analysis of a nineteenth century tobacco pipe from a Maryland slave quarter

Schablitsky, J. M., Witt, K. E., Madrigal, J. R., Ellegaard, M. R., Malhi, R. S. & Schroeder, H., May 2019, In : Journal of Archaeological Science. 105, p. 11-18 8 p.

Research output: Contribution to journalArticle

genetic test
slave
nicotine
artifact
nineteenth century

An evaluation of primers for detecting denitrifiers via their functional genes

Ma, Y., Zilles, J. & Kent, A. D., Apr 2019, In : Environmental Microbiology. 21, 4, p. 1196-1210 15 p.

Research output: Contribution to journalArticle

Denitrification
denitrification
Ecology
functional group
gene
plasticity
phenotype
environmental cue
communication
effect

Antarctic blackfin icefish genome reveals adaptations to extreme environments

Kim, B. M., Amores, A., Kang, S., Ahn, D. H., Kim, J. H., Kim, I. C., Lee, J. H., Lee, S. G., Lee, H., Lee, J., Kim, H. W., Desvignes, T., Batzel, P., Sydes, J., Titus, T., Wilson, C. A., Catchen, J. M., Warren, W. C., Schartl, M., Detrich, H. W. & 2 others, Postlethwait, J. H. & Park, H., Mar 1 2019, In : Nature Ecology and Evolution. 3, 3, p. 469-478 10 p.

Research output: Contribution to journalArticle

genome
gene
genes
ice damage
biological rhythm

Ant interceptions reveal roles of transport and commodity in identifying biosecurity risk pathways into Australia

Suhr, E. L., O'Dowd, D. J., Suarez, A. V., Cassey, P., Wittmann, T. A., Ross, J. V. & Cope, R. C., Jan 1 2019, In : NeoBiota. 53, p. 1-24 24 p.

Research output: Contribution to journalArticle

Open Access
biosecurity
interception
products and commodities
commodity
ant

Anti-parasitic egg rejection by great reed warblers (Acrocephalus arundinaceus) tracks differences along an eggshell color gradient

Abolins-Abols, M., Hanley, D., Moskát, C., Grim, T. & Hauber, M. E., Sep 2019, In : Behavioural Processes. 166, 103902.

Research output: Contribution to journalArticle

Egg Shell
Songbirds
egg shell
Eggs
Ovum

A physical model-based method for retrieving urban land surface temperatures under cloudy conditions

Fu, P., Xie, Y., Weng, Q., Myint, S., Meacham-Hensold, K. & Bernacchi, C., Sep 1 2019, In : Remote Sensing of Environment. 230, 111191.

Research output: Contribution to journalArticle

physical models
surface temperature
land surface
Mean square error
Temperature

Are we approaching a water ceiling to maize yields in the United States?

Delucia, E. H., Chen, S., Guan, K., Peng, B., Li, Y., Gomez-Casanovas, N., Kantola, I. B., Bernacchi, C., Huang, Y., Long, S. P. & Ort, D. R., Jun 18 2019, In : Ecosphere. 10, 6, e02773.

Research output: Contribution to journalArticle

Open Access
maize
corn
vapor pressure
water
water use efficiency

A species-level taxonomic review and host associations of glyptapanteles (Hymenoptera, Braconidae, Microgastrinae) with an emphasis on 136 new reared species from Costa Rica and Ecuador

Arias-Penna, D. C., Whitfield, J. B., Janzen, D. H., Hallwachs, W., Dyer, L. A., Smith, M. A., Hebert, P. D. N. & Fernández-Triana, J. L., Jan 1 2019, In : ZooKeys. 2019, 890, p. 1-685 685 p.

Research output: Contribution to journalArticle

Open Access
Glyptapanteles
Braconidae
Ecuador
Costa Rica
Hymenoptera

Assembling and analysis of sanicula orthacantha chloroplast genome

Chen, Z., Yao, X., Downie, S. R. & Wang, Q., Apr 2019, In : Biodiversity Science. 27, 4, p. 366-372 7 p.

Research output: Contribution to journalArticle

Sanicula
chloroplast
genome
gene
genes

Assembly of allele-aware, chromosomal-scale autopolyploid genomes based on Hi-C data

Zhang, X., Zhang, S., Zhao, Q., Ming, R. & Tang, H., Aug 1 2019, In : Nature Plants. 5, 8, p. 833-845 13 p.

Research output: Contribution to journalArticle

autopolyploidy
alleles
genome
chromosomes
diploidy

Assembly of the 373k gene space of the polyploid sugarcane genome reveals reservoirs of functional diversity in the world's leading biomass crop

Souza, G. M., Van Sluys, M. A., Lembke, C. G., Lee, H., Margarido, G. R. A., Hotta, C. T., Gaiarsa, J. W., Diniz, A. L., Oliveira, M. D. M., Ferreira, S. D. S., Nishiyama, M. Y., Ten-Caten, F., Ragagnin, G. T., Andrade, P. D. M., De Souza, R. F., Nicastro, G. G., Pandya, R., Kim, C., Guo, H., Durham, A. M. & 9 others, Carneiro, M. S., Zhang, J., Zhang, X., Zhang, Q., Ming, R., Schatz, M. C., Davidson, B., Paterson, A. H. & Heckerman, D., Dec 6 2019, In : GigaScience. 8, 12, giz129.

Research output: Contribution to journalArticle

Open Access
Saccharum
Polyploidy
Biomass
Crops
Genes

A subsidiary cell-localized glucose transporter promotes stomatal conductance and photosynthesis

Wang, H., Yan, S., Xin, H., Huang, W., Zhang, H., Teng, S., Yu, Y. C., Fernie, A. R., Lu, X., Li, P., Li, S., Zhang, C., Ruan, Y. L., Chen, L. Q. & Langa, Z., Jun 2019, In : Plant Cell. 31, 6, p. 1328-1343 16 p.

Research output: Contribution to journalArticle

glucose transporters
Facilitative Glucose Transport Proteins
Photosynthesis
stomatal conductance
Clustered Regularly Interspaced Short Palindromic Repeats

A subtype of oral, laryngeal, esophageal, and lung, squamous cell carcinoma with high levels of TrkB-T1 neurotrophin receptor mRNA

Zhou, Y., Sinha, S., Schwartz, J. L. & Adami, G. R., Jun 20 2019, In : BMC Cancer. 19, 1, 607.

Research output: Contribution to journalArticle

Open Access
Nerve Growth Factor Receptors
Squamous Cell Carcinoma
Lung
Messenger RNA
Neoplasms

A tale of two genes: Divergent evolutionary fate of haptoglobin and hemopexin in hemoglobinless Antarctic icefishes

Bilyk, K. T., Zhuang, X., Murphy, K. R. & Cheng-De Vries, C-H. C., Jan 1 2019, In : Journal of Experimental Biology. 222, 6, jeb188573.

Research output: Contribution to journalArticle

Open Access
Hemopexin
Haptoglobins
haptoglobins
hemoglobin
Hemoglobins