Plant Biology &ndash; Research Output

2019

Proceedings of the national academy of sciences—its evolution and adaptation

Berenbaum, M. R., Jan 15 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 3, p. 704-706 3 p.

Research output: Contribution to journal › Review article

Speaking of gender bias

Berenbaum, M. R., Apr 23 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 17, p. 8086-8088 3 p.

Research output: Contribution to journal › Review article

Open Access

The influence of rising tropospheric carbon dioxide and ozone on plant productivity

Ainsworth, E., Lemonnier, P. & Wedow, J. M., Jan 1 2019, In : Plant Biology.

Research output: Contribution to journal › Review article

Open Access

ozone

carbon dioxide

pollutants

productivity

terrestrial ecosystem

Water Use Efficiency as a Constraint and Target for Improving the Resilience and Productivity of C ₃ and C ₄ Crops

Leakey, A., Ferguson, J. N., Pignon, C. P., Wu, A., Jin, Z., Hammer, G. L. & Lobell, D. B., Apr 1 2019, In : Annual Review of Plant Biology. 70, p. 781-808 28 p.

Research output: Contribution to journal › Review article

water use efficiency

Water

crops

Photosynthesis

photosynthesis

2018

Alley cropping: Global patterns of species composition and function

Wolz, K. J. & Delucia, E. H., Jan 15 2018, In : Agriculture, Ecosystems and Environment. 252, p. 61-68 8 p.

Research output: Contribution to journal › Review article

alley cropping

species diversity

crop

crops

fodder

Approaches and challenges to the study of loess - Introduction to the LoessFest Special Issue

Schaetzl, R. J., Bettis, E. A., Crouvi, O., Fitzsimmons, K. E., Grimley, D. A., Hambach, U., Lehmkuhl, F., Marković, S. B., Mason, J. A., Owczarek, P., Roberts, H. M., Rousseau, D. D., Stevens, T., Vandenberghe, J., Zárate, M., Veres, D., Yang, S., Zech, M., Conroy, J., Dave, A. K. & 8 othersFaust, D., Hao, Q., Obreht, I., Prud'Homme, C., Smalley, I., Tripaldi, A., Zeeden, C. & Zech, R., May 1 2018, In : Quaternary Research (United States). 89, 3, p. 563-618 56 p.

Research output: Contribution to journal › Review article

loess

student

Loess

Consensus, uncertainties and challenges for perennial bioenergy crops and land use

Whitaker, J., Field, J. L., Bernacchi, C., Cerri, C. E. P., Ceulemans, R., Davies, C. A., Delucia, E. H., Donnison, I. S., McCalmont, J. P., Paustian, K., Rowe, R. L., Smith, P., Thornley, P. & McNamara, N. P., Mar 1 2018, In : GCB Bioenergy. 10, 3, p. 150-164 15 p.

Research output: Contribution to journal › Review article

energy crops

bioenergy

Land use

Crops

Greenhouse gases

Optimizing photorespiration for improved crop productivity

South, P. F., Cavanagh, A. P., Lopez-Calcagno, P. E., Raines, C. A. & Ort, D. R., Dec 1 2018, In : Journal of Integrative Plant Biology. 60, 12, p. 1217-1230 14 p.

Research output: Contribution to journal › Review article

photorespiration

Crops

ribulose 1,5-diphosphate

Productivity

Oxygenases

Phloem function: a key to understanding and manipulating plant responses to rising atmospheric [CO₂]?

Ainsworth, E. & Lemonnier, P., Jun 1 2018, In : Current opinion in plant biology. 43, p. 50-56 7 p.

Research output: Contribution to journal › Review article

phloem

plant response

carbon dioxide

phloem loading

sucrose

Preface: Valedictory from a Gadfly Grammarian

Berenbaum, M. R., Jan 7 2018, In : Annual Review of Entomology. 63, p. v-ix

Research output: Contribution to journal › Review article

entomology

Revisiting paradigms of Ca²⁺ signaling protein kinase regulation in plants

Bender, K. W., Zielinski, R. E. & Huber, S. C., Jan 15 2018, In : Biochemical Journal. 475, 1, p. 207-223 17 p.

Research output: Contribution to journal › Review article

Protein Kinases

Chemical activation

Calcineurin

Phosphotransferases

Sensors

2017

Potential of global croplands and bioenergy crops for climate change mitigation through deployment for enhanced weathering

Kantola, I. B., Masters, M. D., Beerling, D. J., Long, S. P. & Delucia, E. H., Apr 1 2017, In : Biology Letters. 13, 4, 0714.

Research output: Contribution to journal › Review article

Climate Change

energy crops

weathering

Soil

carbon dioxide

Rooting for cassava: insights into photosynthesis and associated physiology as a route to improve yield potential

De Souza, A. P., Massenburg, L. N., Jaiswal, D., Cheng, S., Shekar, R. & Long, S. P., Jan 1 2017, In : New Phytologist. 213, 1, p. 50-65 16 p.

Research output: Contribution to journal › Review article

Manihot

Photosynthesis

cassava

rooting

physiology

2016

Does the Honey Bee "risk Cup" Runneth Over? Estimating Aggregate Exposures for Assessing Pesticide Risks to Honey Bees in Agroecosystems

Berenbaum, M. R., Jan 13 2016, In : Journal of Agricultural and Food Chemistry. 64, 1, p. 13-20 8 p.

Research output: Contribution to journal › Review article

aggregate exposure

Honey

Bees

agroecosystems

Pesticides

Grass pollen surface ornamentation: A review of morphotypes and taxonomic utility

Mander, L. & Punyasena, S. W., Jul 1 2016, In : Journal of Micropalaeontology. 35, 2, p. 121-124 4 p.

Research output: Contribution to journal › Review article

ornamentation

morphotype

pollen

grass

scanning electron microscopy

Has photosynthetic capacity increased with 80years of soybean breeding? An examination of historical soybean cultivars

Koester, R. P., Nohl, B. M., Diers, B. W. & Ainsworth, E., May 1 2016, In : Plant Cell and Environment. 39, 5, p. 1058-1067 10 p.

Research output: Contribution to journal › Review article

Soybeans

Breeding

Biomass

soybeans

breeding

Manipulating photorespiration to increase plant productivity: Recent advances and perspectives for crop improvement

Betti, M., Bauwe, H., Busch, F. A., Fernie, A. R., Keech, O., Levey, M., Ort, D. R., Parry, M. A. J., Sage, R., Timm, S., Walker, B. & Weber, A. P. M., May 1 2016, In : Journal of experimental botany. 67, 10, p. 2977-2988 12 p.

Research output: Contribution to journal › Review article

photorespiration

engineering

Ribulose-Bisphosphate Carboxylase

Oxygenases

Genetic Engineering

Plants in silico: Why, why now and what?-an integrative platform for plant systems biology research

Zhu, X. G., Lynch, J. P., LeBauer, D. S., Millar, A. J., Stitt, M. & Long, S. P., May 1 2016, In : Plant Cell and Environment. 39, 5, p. 1049-1057 9 p.

Research output: Contribution to journal › Review article

Systems Biology

Computer Simulation

Biological Sciences

Research

Ecosystem

The Costs of Photorespiration to Food Production Now and in the Future

Walker, B. J., Vanloocke, A., Bernacchi, C. & Ort, D. R., Apr 29 2016, In : Annual Review of Plant Biology. 67, p. 107-129 23 p.

Research output: Contribution to journal › Review article

photorespiration

food production

Carbon Dioxide

Costs and Cost Analysis

Food

2015

Arctic tundra fires: Natural variability and responses to climate change

Hu, F. S., Higuera, P. E., Duffy, P., Chipman, M. L., Rocha, A. V., Young, A. M., Kelly, R. & Dietze, M. C., Sep 1 2015, In : Frontiers in Ecology and the Environment. 13, 7, p. 369-377 9 p.

Research output: Contribution to journal › Review article

tundra

climate change

fire regime

climate

socioeconomic impact

Biophysical impacts of climate-smart agriculture in the Midwest United States

Bagley, J. E., Miller, J. & Bernacchi, C., Sep 1 2015, In : Plant, Cell and Environment. 38, 9, p. 1913-1930 18 p.

Research output: Contribution to journal › Review article

Midwestern United States

Agriculture

Climate

agriculture

climate

Cheaters must prosper: Reconciling theoretical and empirical perspectives on cheating in mutualism

Jones, E. I., Afkhami, M. E., Akçay, E., Bronstein, J. L., Bshary, R., Frederickson, M. E., Heath, K. D., Hoeksema, J. D., Ness, J. H., Pankey, M. S., Porter, S. S., Sachs, J. L., Scharnagl, K. & Friesen, M. L., Nov 1 2015, In : Ecology Letters. 18, 11, p. 1270-1284 15 p.

Research output: Contribution to journal › Review article

mutualism

fitness

researchers

experiment

methodology

Meeting the global food demand of the future by engineering crop photosynthesis and yield potential

Long, S. P., Marshall-Colon, A. & Zhu, X. G., Mar 26 2015, In : Cell. 161, 1, p. 56-66 11 p., 8102.

Research output: Contribution to journal › Review article

Genetic Engineering

Photosynthesis

Computer Simulation

Crops

Food

Photosynthetic terpene hydrocarbon production for fuels and chemicals

Wang, X., Ort, D. R. & Yuan, J. S., Feb 1 2015, In : Plant Biotechnology Journal. 13, 2, p. 137-146 10 p.

Research output: Contribution to journal › Review article

fuel production

Terpenes

Hydrocarbons

terpenoids

hydrocarbons

Redesigning photosynthesis to sustainably meet global food and bioenergy demand

Ort, D. R., Merchant, S. S., Alric, J., Barkan, A., Blankenship, R. E., Bock, R., Croce, R., Hanson, M. R., Hibberd, J. M., Long, S. P., Moore, T. A., Moroney, J., Niyogi, K. K., Parry, M. A. J., Peralta-Yahya, P. P., Prince, R. C., Redding, K. E., Spalding, M. H., Van Wijk, K. J., Vermaas, W. F. J. & 5 othersVon Caemmerer, S., Weber, A. P. M., Yeates, T. O., Yuan, J. S. & Zhu, X. G., Jul 14 2015, In : Proceedings of the National Academy of Sciences of the United States of America. 112, 28, p. 8529-8536 8 p.

Research output: Contribution to journal › Review article

Photosynthesis

Synthetic Biology

Food

Biofuels

Population Growth

SWEETs, transporters for intracellular and intercellular sugar translocation

Eom, J. S., Chen, L., Sosso, D., Julius, B. T., Lin, I. W., Qu, X. Q., Braun, D. M. & Frommer, W. B., Jun 1 2015, In : Current opinion in plant biology. 25, p. 53-62 10 p.

Research output: Contribution to journal › Review article

transporters

sugars

sucrose

hexoses

monosaccharides

Toward systems-level analysis of agricultural production from crassulacean acid metabolism (CAM): Scaling from cell to commercial production

Davis, S. C., Ming, R. R., LeBauer, D. S. & Long, S. P., Oct 1 2015, In : New Phytologist. 208, 1, p. 66-72 7 p.

Research output: Contribution to journal › Review article

Crassulacean acid metabolism

agriculture

Acids

cells

economic sustainability

Xenobiotic detoxification pathways in honey bees

Berenbaum, M. R. & Johnson, R. M., May 16 2015, In : Current Opinion in Insect Science. 10, p. 51-58 8 p.

Research output: Contribution to journal › Review article

honey

xenobiotics

detoxification

bee

honey bees

2014

Climate refugia: Joint inference from fossil records, species distribution models and phylogeography

Gavin, D. G., Fitzpatrick, M. C., Gugger, P. F., Heath, K. D., Rodríguez-Sánchez, F., Dobrowski, S. Z., Hampe, A., Hu, F. S., Ashcroft, M. B., Bartlein, P. J., Blois, J. L., Carstens, B. C., Davis, E. B., de Lafontaine, G., Edwards, M. E., Fernandez, M., Henne, P. D., Herring, E. M., Holden, Z. A., Kong, W. S. & 8 othersLiu, J., Magri, D., Matzke, N. J., Mcglone, M. S., Saltré, F., Stigall, A. L., Tsai, Y. H. E. & Williams, J. W., Jan 1 2014, In : New Phytologist. 204, 1, p. 37-54 18 p.

Research output: Contribution to journal › Review article

Phylogeography

phylogeography

refuge habitats

Climate

biogeography

Genomic analyses of the CAM plant pineapple

Zhang, J., Liu, J. & Ming, R. R., Jan 1 2014, In : Journal of experimental botany. 65, 13, p. 3395-3404 10 p.

Research output: Contribution to journal › Review article

Ananas

Crassulacean acid metabolism

pineapples

genomics

Acids

Genomics of sex determination

Zhang, J., Boualem, A., Bendahmane, A. & Ming, R. R., Jan 1 2014, In : Current opinion in plant biology. 18, 1, p. 110-116 7 p.

Research output: Contribution to journal › Review article

genomics

gender

sex chromosomes

genes

dioecy

On theory in ecology

Marquet, P. A., Allen, A. P., Brown, J. H., Dunne, J. A., Enquist, B. J., Gillooly, J. F., Gowaty, P. A., Green, J. L., Harte, J., Hubbell, S. P., O'Dwyer, J. P., Okie, J. G., Ostling, A., Ritchie, M., Storch, D. & West, G. B., Jan 1 2014, In : BioScience. 64, 8, p. 701-710 10 p.

Research output: Contribution to journal › Review article

Ecology

ecology

environmental science

Aptitude

prediction

Reconstructing disturbances and their biogeochemical consequences over multiple timescales

McLauchlan, K. K., Higuera, P. E., Gavin, D. G., Perakis, S. S., Mack, M. C., Alexander, H., Battles, J., Biondi, F., Buma, B., Colombaroli, D., Enders, S. K., Engstrom, D. R., Hu, F. S., Marlon, J. R., Marshall, J., McGlone, M., Morris, J. L., Nave, L. E., Shuman, B., Smithwick, E. A. H. & 4 othersUrrego, D. H., Wardle, D. A., Williams, C. J. & Williams, J. J., Jan 1 2014, In : BioScience. 64, 2, p. 105-116 12 p.

Research output: Contribution to journal › Review article

Ecosystem

ecosystems

chronosequences

long term experiments

ecologists

Sex determination in flowering plants: Papaya as a model system

Aryal, R. & Ming, R. R., Mar 1 2014, In : Plant Science. 217-218, p. 56-62 7 p.

Research output: Contribution to journal › Review article

Carica

papayas

Angiospermae

Sex Chromosomes

gender

The biophysical link between climate, water, and vegetation in bioenergy agro-ecosystems

Bagley, J. E., Davis, S. C., Georgescu, M., Hussain, M. Z., Miller, J., Nesbitt, S., VanLoocke, A. & Bernacchi, C., Dec 1 2014, In : Biomass and Bioenergy. 71, p. 187-201 15 p.

Research output: Contribution to journal › Review article

bioenergy

Gas emissions

Greenhouse gases

Land use

Ecosystems

2013

Altered dynamics of forest recovery under a changing climate

Anderson-Teixeira, K. J., Miller, A. D., Mohan, J. E., Hudiburg, T. W., Duval, B. D. & Delucia, E. H., Jul 1 2013, In : Global change biology. 19, 7, p. 2001-2021 21 p.

Research output: Contribution to journal › Review article

Recovery

Climate change

Ecosystems

climate

Feedback

An emerging understanding of mechanisms governing insect herbivory under elevated CO₂

Zavala, J. A., Nabity, P. D. & Delucia, E. H., Jan 7 2013, In : Annual Review of Entomology. 58, p. 79-97 19 p.

Research output: Contribution to journal › Review article

herbivory

herbivores

insect

insects

chemistry

Carbon partitioning in sugarcane (Saccharum species)

Wang, J., Nayak, S., Koch, K. & Ming, R. R., Jun 18 2013, In : Frontiers in Plant Science. 4, JUN, 201.

Research output: Contribution to journal › Review article

Saccharum

sugarcane

sucrose

carbon

cell walls

Energy and carbon accounting to compare bioenergy crops

Borak, B., Ort, D. R. & Burbaum, J. J., Jun 1 2013, In : Current Opinion in Biotechnology. 24, 3, p. 369-375 7 p.

Research output: Contribution to journal › Review article

Biofuels

Solar Energy

Crops

Carbon

Solar energy

Toward cool C4 crops

Long, S. P. & Spence, A. K., Apr 1 2013, In : Annual Review of Plant Biology. 64, p. 701-722 22 p.

Research output: Contribution to journal › Review article

Zea mays

Photosynthesis

crops

Climate

Nitrogen

Tropical forest responses to increasing atmospheric CO ₂: Current knowledge and opportunities for future research

Cernusak, L. A., Winter, K., Dalling, J. W., Holtum, J. A. M., Jaramillo, C., Körner, C., Leakey, A., Norby, R. J., Poulter, B., Turner, B. L. & Wright, S. J., Jul 8 2013, In : Functional Plant Biology. 40, 6, p. 531-551 21 p.

Research output: Contribution to journal › Review article

tropical forests

photosynthesis

photorespiration

ecosystems

carbon sequestration

2012

Accelerating yield potential in soybean: Potential targets for biotechnological improvement

Ainsworth, E., Yendrek, C. R., Skoneczka, J. A. & Long, S. P., Jan 1 2012, In : Plant, Cell and Environment. 35, 1, p. 38-52 15 p.

Research output: Contribution to journal › Review article

Soybeans

soybeans

abortion (plants)

Carbon

carbon

A multi-biome gap in understanding of crop and ecosystem responses to elevated CO ₂

Leakey, A., Bishop, K. A. & Ainsworth, E., Jun 1 2012, In : Current opinion in plant biology. 15, 3, p. 228-236 9 p.

Research output: Contribution to journal › Review article

ecosystems

crops

environmental factors

temperate zones

subtropics

Elements of a dynamic systems model of canopy photosynthesis

Zhu, X. G., Song, Q. & Ort, D. R., Jun 1 2012, In : Current opinion in plant biology. 15, 3, p. 237-244 8 p.

Research output: Contribution to journal › Review article

photosynthesis

canopy

photosynthates

nitrogen metabolism

water vapor

Evolutionary context for understanding and manipulating plant responses to past, present and future atmospheric [CO₂]

Leakey, A. & Lau, J. A., Jan 1 2012, In : Philosophical Transactions of the Royal Society B: Biological Sciences. 367, 1588, p. 613-629 17 p.

Research output: Contribution to journal › Review article

Photosynthesis

plant response

Ribulose-Bisphosphate Carboxylase

Climate change

Ecosystems

Examining Cassava's Potential to Enhance Food Security Under Climate Change

Rosenthal, D. M. & Ort, D. R., Mar 1 2012, In : Tropical Plant Biology. 5, 1, p. 30-38 9 p.

Research output: Contribution to journal › Review article

Manihot

Food Supply

Climate Change

food security

cassava

Carica

tropical and subtropical fruits

papayas

fruit trees

Fruit

Carica

tropical and subtropical fruits

papayas

fruit trees

Fruit

Genome of papaya, a fast growing tropical fruit tree

Ming, R. R., Yu, Q., Moore, P. H., Paull, R. E., Chen, N. J., Wang, M. L., Zhu, Y. J., Schuler, M. A., Jiang, J. & Paterson, A. H., Jun 1 2012, In : Tree Genetics and Genomes. 8, 3, p. 445-462 18 p.

Research output: Contribution to journal › Review article

Carica

tropical and subtropical fruits

papayas

fruit trees

Fruit

Harvesting Carbon from Eastern US Forests: Opportunities and: Impacts of an Expanding Bioenergy Industry

Davis, S. C., Dietze, M., Delucia, E. H., Field, C., Loarie, S., Hamburg, S. P., Parton, W., Potts, M., Ramage, B., Wang, D., Youngs, H. & Long, S. P., Aug 3 2012, In : Forests. 3, 2, p. 370-397 28 p.

Research output: Contribution to journal › Review article

bioenergy industry

bioenergy

abandoned land

carbon

industry