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2020

Allele specific expression of Dof genes responding to hormones and abiotic stresses in sugarcane

Cai, M., Lin, J., Li, Z., Lin, Z., Ma, Y., Wang, Y. & Ming, R., Jan 1 2020, In : PloS one. 15, 1, e0227716.

Research output: Contribution to journalArticle

Open Access

Analysis of MADS-box genes revealed modified flowering gene network and diurnal expression in pineapple

Zhang, X., Fatima, M., Zhou, P., Ma, Q. & Ming, R., Jan 2 2020, In : BMC genomics. 21, 1, 8.

Research output: Contribution to journalArticle

Open Access

Arctic and boreal paleofire records reveal drivers of fire activity and departures from Holocene variability

Hoecker, T. J., Higuera, P. E., Kelly, R. & Hu, F. S., Jan 1 2020, (Accepted/In press) In : Ecology.

Research output: Contribution to journalArticle

A wish list for synthetic biology in photosynthesis research

Zhu, X. G., Ort, D. R., Parry, M. A. J. & Von Caemmerer, S., Apr 6 2020, In : Journal of experimental botany. 71, 7, p. 2219-2225 7 p.

Research output: Contribution to journalArticle

Open Access

Cooperation and stability for complex systems in resource-limited environments

Butler, S. & O’Dwyer, J. P., Jun 1 2020, In : Theoretical Ecology. 13, 2, p. 239-250 12 p.

Research output: Contribution to journalArticle

Co-producing knowledge: the Integrated Ecosystem Model for resource management in Arctic Alaska

Euskirchen, E. S., Timm, K., Breen, A. L., Gray, S., Rupp, T. S., Martin, P., Reynolds, J. H., Sesser, A., Murphy, K., Littell, J. S., Bennett, A., Bolton, W. R., Carman, T., Genet, H., Griffith, B., Kurkowski, T., Lara, M. J., Marchenko, S., Nicolsky, D., Panda, S. & 4 others, Romanovsky, V., Rutter, R., Tucker, C. L. & McGuire, A. D., Jan 1 2020, (Accepted/In press) In : Frontiers in Ecology and the Environment.

Research output: Contribution to journalArticle

Counting niches: Abundance-by-trait patterns reveal niche partitioning in a Neotropical forest

D’Andrea, R., Guittar, J., O’Dwyer, J. P., Figueroa, H., Wright, S. J., Condit, R. & Ostling, A., Jun 1 2020, In : Ecology. 101, 6, e03019.

Research output: Contribution to journalArticle

Deriving high-spatiotemporal-resolution leaf area index for agroecosystems in the U.S. Corn Belt using Planet Labs CubeSat and STAIR fusion data

Kimm, H., Guan, K., Jiang, C., Peng, B., Gentry, L. F., Wilkin, S. C., Wang, S., Cai, Y., Bernacchi, C. J., Peng, J. & Luo, Y., Mar 15 2020, In : Remote Sensing of Environment. 239, 111615.

Research output: Contribution to journalArticle

Development and Evaluation of SSR Markers Based on Large Scale Full-Length Transcriptome Sequencing in Sugarcane

Xiao, N., Wang, H., Yao, W., Zhang, M., Ming, R. & Zhang, J., Jan 1 2020, (Accepted/In press) In : Tropical Plant Biology.

Research output: Contribution to journalArticle

Diversity of metabolite accumulation patterns in inner and outer seed coats of pomegranate: exploring their relationship with genetic mechanisms of seed coat development

Qin, G., Liu, C., Li, J., Qi, Y., Gao, Z., Zhang, X., Yi, X., Pan, H., Ming, R. & Xu, Y., Dec 1 2020, In : Horticulture Research. 7, 1, 10.

Research output: Contribution to journalArticle

DNA methylome and transcriptome landscapes revealed differential characteristics of dioecious flowers in papaya

Zhou, P., Zhang, X., Fatima, M., Ma, X., Fang, H., Yan, H. & Ming, R., Dec 1 2020, In : Horticulture Research. 7, 1, 81.

Research output: Contribution to journalArticle

Open Access

Estimating photosynthetic traits from reflectance spectra: A synthesis of spectral indices, numerical inversion, and partial least square regression

Fu, P., Meacham-Hensold, K., Guan, K., Wu, J. & Bernacchi, C., Jan 1 2020, (Accepted/In press) In : Plant Cell and Environment.

Research output: Contribution to journalArticle

Open Access

Genome-wide identification and expression profile analysis of WRKY family genes in the autopolyploid saccharum spontaneum

Li, Z., Hua, X., Zhong, W., Yuan, Y., Wang, Y., Wang, Z., Ming, R. & Zhang, J., Mar 1 2020, In : Plant and Cell Physiology. 61, 3, p. 616-630 15 p.

Research output: Contribution to journalArticle

Genomic variation between PRSV resistant transgenic SunUp and its progenitor cultivar Sunset

Fang, J., Fang, J., Fang, J., Fang, J., Wood, A. M., Chen, Y., Chen, Y., Yue, J., Ming, R. & Ming, R., Jun 12 2020, In : BMC genomics. 21, 1, 398.

Research output: Contribution to journalArticle

Open Access

Guidelines for including bamboos in tropical ecosystem monitoring

Fadrique, B., Veldman, J. W., Dalling, J. W., Clark, L. G., Montti, L., Ruiz-Sanchez, E., Rother, D. C., Ely, F., Farfan-Ríos, W., Gagnon, P., Prada, C. M., Camargo García, J. C., Saha, S., Veblen, T. T., Londoño, X., Feeley, K. J. & Rockwell, C. A., May 1 2020, In : Biotropica. 52, 3, p. 427-443 17 p.

Research output: Contribution to journalArticle

Habitat-specific effects of bark on wood decomposition: Influences of fragmentation, nitrogen concentration and microbial community composition

Jones, J. M., Heath, K. D., Ferrer, A. & Dalling, J. W., May 1 2020, In : Functional Ecology. 34, 5, p. 1123-1133 11 p.

Research output: Contribution to journalArticle

Hierarchical detection of diverse Clade II (atypical) nosZ genes using new primer sets for classical- and multiplex PCR array applications

Chee-Sanford, J. C., Connor, L., Krichels, A., Yang, W. H. & Sanford, R. A., May 2020, In : Journal of Microbiological Methods. 172, 105908.

Research output: Contribution to journalArticle

Ice-age persistence and genetic isolation of the disjunct distribution of larch in Alaska

Napier, J. D., Fernandez, M. C., de Lafontaine, G. & Hu, F. S., Jan 1 2020, (Accepted/In press) In : Ecology and Evolution.

Research output: Contribution to journalArticle

Open Access

Identifying historical and future potential lake drainage events on the western Arctic coastal plain of Alaska

Jones, B. M., Arp, C. D., Grosse, G., Nitze, I., Lara, M. J., Whitman, M. S., Farquharson, L. M., Kanevskiy, M., Parsekian, A. D., Breen, A. L., Ohara, N., Rangel, R. C. & Hinkel, K. M., Jan 1 2020, In : Permafrost and Periglacial Processes. 31, 1, p. 110-127 18 p.

Research output: Contribution to journalArticle

Open Access

Last glacial maximum ecology and climate from terrestrial gastropod assemblages in Peoria loess, western Kentucky

Grimley, D. A., Counts, R. C., Conroy, J. L., Wang, H., Dendy, S. N. & Nield, C. B., Jul 1 2020, In : Journal of Quaternary Science. 35, 5, p. 650-663 14 p.

Research output: Contribution to journalArticle

Light, Not Age, Underlies The Maladaptation Of Maize And Miscanthus C4 Photosynthesis To Self-Shading

Collison, R., Raven, E., Pignon, C. P. & Long, S. P., May 18 2020, (Accepted/In press) In : Frontiers in Plant Science.

Research output: Contribution to journalArticle

Open Access

Light availability and rhizobium variation interactively mediate the outcomes of legume–rhizobium symbiosis

Heath, K. D., Podowski, J. C., Heniff, S., Klinger, C. R., Burke, P. V., Weese, D. J., Yang, W. H. & Lau, J. A., Feb 1 2020, In : American journal of botany. 107, 2, p. 229-238 10 p.

Research output: Contribution to journalArticle

Open Access

Looking back to look ahead: a vision for soil denitrification research

Almaraz, M., Wong, M. Y. & Yang, W. H., Jan 1 2020, In : Ecology. 101, 1, e02917.

Research output: Contribution to journalArticle

Open Access

Multiscale computational models can guide experimentation and targeted measurements for crop improvement

Benes, B., Guan, K., Lang, M., Long, S. P., Lynch, J. P., Marshall-Colon, A., Peng, B., Schnable, J., Sweetlove, L. J. & Turk, M. J., Jul 1 2020, In : Plant Journal. 103, 1, p. 21-31 11 p.

Research output: Contribution to journalArticle

Novel bayesian networks for genomic prediction of developmental traits in biomass sorghum

Dos Santos, J. P. R., Fernandes, S. B., McCoy, S., Lozano, R., Brown, P. J., Leakey, A. D. B., Buckler, E. S., Garcia, A. A. F. & Gore, M. A., Feb 1 2020, In : G3: Genes, Genomes, Genetics. 10, 2, p. 769-781 13 p.

Research output: Contribution to journalArticle

Open Access

Nutrient addition increases grassland sensitivity to droughts

Bharath, S., Borer, E. T., Biederman, L. A., Blumenthal, D. M., Fay, P. A., Gherardi, L. A., Knops, J. M. H., Leakey, A. D. B., Yahdjian, L. & Seabloom, E. W., Jan 1 2020, (Accepted/In press) In : Ecology. e02981.

Research output: Contribution to journalArticle

Open Access

Photosynthesis across African cassava germplasm is limited by Rubisco and mesophyll conductance at steady state, but by stomatal conductance in fluctuating light

De Souza, A. P., Wang, Y., Orr, D. J., Carmo-Silva, E. & Long, S. P., Mar 1 2020, In : New Phytologist. 225, 6, p. 2498-2512 15 p.

Research output: Contribution to journalArticle

Open Access

Photosynthesis in the fleeting shadows: An overlooked opportunity for increasing crop productivity?

Wang, Y., Burgess, S. J., de Becker, E. M. & Long, S. P., Feb 1 2020, In : The Plant Journal. 101, 4, p. 874-884 11 p.

Research output: Contribution to journalArticle

Open Access

Photosynthetic efficiency and mesophyll conductance are unaffected in Arabidopsis thaliana aquaporin knock-out lines

Kromdijk, J., Głowacka, K., Long, S. P. & Raines, C., Jan 1 2020, In : Journal of experimental botany. 71, 1, p. 318-329 12 p.

Research output: Contribution to journalArticle

Open Access

Plant–environment interactions from the lens of plant stress, reproduction, and mutualisms

Baucom, R. S., Heath, K. D. & Chambers, S. M., Jan 1 2020, (Accepted/In press) In : American journal of botany.

Research output: Contribution to journalArticle

Open Access

Plot-level rapid screening for photosynthetic parameters using proximal hyperspectral imaging

Meacham-Hensold, K., Fu, P., Wu, J., Serbin, S., Montes, C. M., Ainsworth, E., Guan, K., Dracup, E., Pederson, T., Driever, S. & Bernacchi, C., Apr 6 2020, In : Journal of experimental botany. 71, 7, p. 2312-2328 17 p.

Research output: Contribution to journalArticle

Open Access

Positional cloning and characterization of the papaya diminutive mutant reveal a truncating mutation in the CpMMS19 gene

Wang, Y., Singh, R., Tong, E., Tang, M., Zheng, L., Fang, H., Li, R., Guo, L., Song, J., Srinivasan, R., Sharma, A., Lin, L., Trujillo, J. A., Manshardt, R., Chen, L. Y., Ming, R. & Yu, Q., Mar 1 2020, In : New Phytologist. 225, 5, p. 2006-2021 16 p.

Research output: Contribution to journalArticle

Redefining droughts for the U.S. Corn Belt: The dominant role of atmospheric vapor pressure deficit over soil moisture in regulating stomatal behavior of Maize and Soybean

Kimm, H., Guan, K., Gentine, P., Wu, J., Bernacchi, C. J., Sulman, B. N., Griffis, T. J. & Lin, C., Jun 15 2020, In : Agricultural and Forest Meteorology. 287, 107930.

Research output: Contribution to journalArticle

Satellite footprint data from OCO-2 and TROPOMI reveal significant spatio-temporal and inter-vegetation type variabilities of solar-induced fluorescence yield in the U.S. Midwest

Wang, C., Guan, K., Peng, B., Chen, M., Jiang, C., Zeng, Y., Wu, G., Wang, S., Wu, J., Yang, X., Frankenberg, C., Köhler, P., Berry, J., Bernacchi, C., Zhu, K., Alden, C. & Miao, G., May 2020, In : Remote Sensing of Environment. 241, 111728.

Research output: Contribution to journalArticle

Seasonal Controls of CO2 and CH4 Dynamics in a Temporarily Flooded Subtropical Wetland

Gomez-Casanovas, N., DeLucia, N. J., DeLucia, E. H., Blanc-Betes, E., Boughton, E. H., Sparks, J. & Bernacchi, C. J., Mar 1 2020, In : Journal of Geophysical Research: Biogeosciences. 125, 3, e2019JG005257.

Research output: Contribution to journalArticle

Seasonal Evolution of Canopy Stomatal Conductance for a Prairie and Maize Field in the Midwestern United States from Continuous Carbonyl Sulfide Fluxes

Berkelhammer, M., Alsip, B., Matamala, R., Cook, D., Whelan, M. E., Joo, E., Bernacchi, C., Miller, J. & Meyers, T., Mar 28 2020, In : Geophysical Research Letters. 47, 6, e2019GL085652.

Research output: Contribution to journalArticle

The genome of kenaf (Hibiscus cannabinus L.) provides insights into bast fibre and leaf shape biogenesis

Zhang, L., Xu, Y., Zhang, X., Ma, X., Zhang, L., Liao, Z., Zhang, Q., Wan, X., Cheng, Y., Zhang, J., Li, D., Zhang, L., Xu, J., Tao, A., Lin, L., Fang, P., Chen, S., Qi, R., Xu, X., Qi, J. & 1 others, Ming, R., Jan 1 2020, (Accepted/In press) In : Plant Biotechnology Journal.

Research output: Contribution to journalArticle

Open Access

Towards oilcane: Engineering hyperaccumulation of triacylglycerol into sugarcane stems

Parajuli, S., Kannan, B., Karan, R., Sanahuja, G., Liu, H., Garcia-Ruiz, E., Kumar, D., Singh, V., Zhao, H., Long, S., Shanklin, J. & Altpeter, F., Jan 1 2020, (Accepted/In press) In : GCB Bioenergy.

Research output: Contribution to journalArticle

Open Access

TRY plant trait database – enhanced coverage and open access

The Nutrient Network, Jan 1 2020, In : Global change biology. 26, 1, p. 119-188 70 p.

Research output: Contribution to journalArticle

Open Access

Variation in photosynthetic induction between rice accessions and its potential for improving productivity

Acevedo-Siaca, L. G., Coe, R., Wang, Y., Kromdijk, J., Quick, W. P. & Long, S. P., Jan 1 2020, (Accepted/In press) In : New Phytologist.

Research output: Contribution to journalArticle

Open Access
2019

A Comparative Analysis of Anthropogenic CO2 Emissions at City Level Using OCO-2 Observations: A Global Perspective

Fu, P., Xie, Y., Moore, C. E., Myint, S. W. & Bernacchi, C. J., Sep 1 2019, In : Earth's Future. 7, 9, p. 1058-1070 13 p.

Research output: Contribution to journalArticle

Open Access

A comparative analysis of complete plastid genomes from Prangos fedtschenkoi and Prangos lipskyi (Apiaceae)

Mustafina, F. U., Yi, D. K., Choi, K., Shin, C. H., Tojibaev, K. S. & Downie, S. R., Jan 2019, In : Ecology and Evolution. 9, 1, p. 364-377 14 p.

Research output: Contribution to journalArticle

Alder distribution and expansion across a tundra hillslope: implications for local N cycling

Salmon, V. G., Breen, A. L., Kumar, J., Lara, M. J., Thornton, P. E., Wullschleger, S. D. & Iversen, C. M., Oct 16 2019, In : Frontiers in Plant Science. 10

Research output: Contribution to journalArticle

Open Access