Research Output

Filter
Article
2020

Allele specific expression of Dof genes responding to hormones and abiotic stresses in sugarcane

Cai, M., Lin, J., Li, Z., Lin, Z., Ma, Y., Wang, Y. & Ming, R., Jan 1 2020, In : PloS one. 15, 1, e0227716.

Research output: Contribution to journalArticle

Open Access

Analysis of MADS-box genes revealed modified flowering gene network and diurnal expression in pineapple

Zhang, X., Fatima, M., Zhou, P., Ma, Q. & Ming, R., Jan 2 2020, In : BMC genomics. 21, 1, 8.

Research output: Contribution to journalArticle

Open Access

Cooperation and stability for complex systems in resource-limited environments

Butler, S. & O’Dwyer, J. P., Jan 1 2020, (Accepted/In press) In : Theoretical Ecology.

Research output: Contribution to journalArticle

Co-producing knowledge: the Integrated Ecosystem Model for resource management in Arctic Alaska

Euskirchen, E. S., Timm, K., Breen, A. L., Gray, S., Rupp, T. S., Martin, P., Reynolds, J. H., Sesser, A., Murphy, K., Littell, J. S., Bennett, A., Bolton, W. R., Carman, T., Genet, H., Griffith, B., Kurkowski, T., Lara, M. J., Marchenko, S., Nicolsky, D., Panda, S. & 4 others, Romanovsky, V., Rutter, R., Tucker, C. L. & McGuire, A. D., Jan 1 2020, (Accepted/In press) In : Frontiers in Ecology and the Environment.

Research output: Contribution to journalArticle

Diversity of metabolite accumulation patterns in inner and outer seed coats of pomegranate: exploring their relationship with genetic mechanisms of seed coat development

Qin, G., Liu, C., Li, J., Qi, Y., Gao, Z., Zhang, X., Yi, X., Pan, H., Ming, R. & Xu, Y., Dec 1 2020, In : Horticulture Research. 7, 1, 10.

Research output: Contribution to journalArticle

Estimating photosynthetic traits from reflectance spectra: A synthesis of spectral indices, numerical inversion, and partial least square regression

Fu, P., Meacham-Hensold, K., Guan, K., Wu, J. & Bernacchi, C., Jan 1 2020, (Accepted/In press) In : Plant Cell and Environment.

Research output: Contribution to journalArticle

Open Access

Habitat-specific effects of bark on wood decomposition: Influences of fragmentation, nitrogen concentration and microbial community composition

Jones, J. M., Heath, K. D., Ferrer, A. & Dalling, J. W., Jan 1 2020, (Accepted/In press) In : Functional Ecology.

Research output: Contribution to journalArticle

Ice-age persistence and genetic isolation of the disjunct distribution of larch in Alaska

Napier, J. D., Fernandez, M. C., de Lafontaine, G. & Hu, F. S., Jan 1 2020, (Accepted/In press) In : Ecology and Evolution.

Research output: Contribution to journalArticle

Open Access

Identifying historical and future potential lake drainage events on the western Arctic coastal plain of Alaska

Jones, B. M., Arp, C. D., Grosse, G., Nitze, I., Lara, M. J., Whitman, M. S., Farquharson, L. M., Kanevskiy, M., Parsekian, A. D., Breen, A. L., Ohara, N., Rangel, R. C. & Hinkel, K. M., Jan 1 2020, In : Permafrost and Periglacial Processes. 31, 1, p. 110-127 18 p.

Research output: Contribution to journalArticle

Open Access

Light availability and rhizobium variation interactively mediate the outcomes of legume–rhizobium symbiosis

Heath, K. D., Podowski, J. C., Heniff, S., Klinger, C. R., Burke, P. V., Weese, D. J., Yang, W. H. & Lau, J. A., Jan 1 2020, (Accepted/In press) In : American journal of botany.

Research output: Contribution to journalArticle

Open Access

Photosynthesis across African cassava germplasm is limited by Rubisco and mesophyll conductance at steady state, but by stomatal conductance in fluctuating light

De Souza, A. P., Wang, Y., Orr, D. J., Carmo-Silva, E. & Long, S. P., Mar 1 2020, In : New Phytologist. 225, 6, p. 2498-2512 15 p.

Research output: Contribution to journalArticle

Open Access

Photosynthesis in the fleeting shadows: An overlooked opportunity for increasing crop productivity?

Wang, Y., Burgess, S. J., de Becker, E. M. & Long, S. P., Feb 1 2020, In : The Plant Journal. 101, 4, p. 874-884 11 p.

Research output: Contribution to journalArticle

Open Access

Photosynthetic efficiency and mesophyll conductance are unaffected in Arabidopsis thaliana aquaporin knock-out lines

Kromdijk, J., Głowacka, K. & Long, S. P., Jan 1 2020, In : Journal of experimental botany. 71, 1, p. 318-329 12 p.

Research output: Contribution to journalArticle

Open Access

Plant–environment interactions from the lens of plant stress, reproduction, and mutualisms

Baucom, R. S., Heath, K. D. & Chambers, S. M., Jan 1 2020, (Accepted/In press) In : American journal of botany.

Research output: Contribution to journalArticle

Open Access

Plot-level rapid screening for photosynthetic parameters using proximal hyperspectral imaging

Meacham-hensold, K., Fu, P., Wu, J., Serbin, S., Montes, C. M., Ainsworth, E., Guan, K., Dracup, E., Pederson, T., Driever, S. & Bernacchi, C., Feb 24 2020, (Accepted/In press) In : Journal of experimental botany.

Research output: Contribution to journalArticle

Open Access

The genome of kenaf (Hibiscus cannabinus L.) provides insights into bast fibre and leaf shape biogenesis

Zhang, L., Xu, Y., Zhang, X., Ma, X., Zhang, L., Liao, Z., Zhang, Q., Wan, X., Cheng, Y., Zhang, J., Li, D., Zhang, L., Xu, J., Tao, A., Lin, L., Fang, P., Chen, S., Qi, R., Xu, X., Qi, J. & 1 others, Ming, R., Jan 1 2020, (Accepted/In press) In : Plant Biotechnology Journal.

Research output: Contribution to journalArticle

Open Access

Variation in photosynthetic induction between rice accessions and its potential for improving productivity

Acevedo-Siaca, L. G., Coe, R., Wang, Y., Kromdijk, J., Quick, W. P. & Long, S. P., Jan 1 2020, (Accepted/In press) In : New Phytologist.

Research output: Contribution to journalArticle

Open Access
2019

A Comparative Analysis of Anthropogenic CO2 Emissions at City Level Using OCO-2 Observations: A Global Perspective

Fu, P., Xie, Y., Moore, C. E., Myint, S. W. & Bernacchi, C. J., Sep 1 2019, In : Earth's Future. 7, 9, p. 1058-1070 13 p.

Research output: Contribution to journalArticle

Open Access

A comparative analysis of complete plastid genomes from Prangos fedtschenkoi and Prangos lipskyi (Apiaceae)

Mustafina, F. U., Yi, D. K., Choi, K., Shin, C. H., Tojibaev, K. S. & Downie, S. R., Jan 2019, In : Ecology and Evolution. 9, 1, p. 364-377 14 p.

Research output: Contribution to journalArticle

Alder distribution and expansion across a tundra hillslope: implications for local N cycling

Salmon, V. G., Breen, A. L., Kumar, J., Lara, M. J., Thornton, P. E., Wullschleger, S. D. & Iversen, C. M., 2019, (Accepted/In press) In : Frontiers in Plant Science.

Research output: Contribution to journalArticle

Open Access

Ammonia flux measurements above a corn canopy using relaxed eddy accumulation and a flux gradient system

Nelson, A. J., Lichiheb, N., Koloutsou-Vakakis, S., Rood, M. J., Heuer, M., Myles, L. T., Joo, E., Miller, J. & Bernacchi, C., Jan 15 2019, In : Agricultural and Forest Meteorology. 264, p. 104-113 10 p.

Research output: Contribution to journalArticle

Analysis of genetic diversity of lychee (Litchi chinensis Sonn.) and wild forest relatives in the Sapindaceae from Vietnam using microsatellites

Tran, H., Kanzaki, S., Triest, L., Hormaza, I., Kuk, N. J., Ming, R., Bousquet, J., Khasa, D. & Van Damme, P., Dec 1 2019, In : Genetic Resources and Crop Evolution. 66, 8, p. 1653-1669 17 p.

Research output: Contribution to journalArticle

A physical model-based method for retrieving urban land surface temperatures under cloudy conditions

Fu, P., Xie, Y., Weng, Q., Myint, S., Meacham-Hensold, K. & Bernacchi, C., Sep 1 2019, In : Remote Sensing of Environment. 230, 111191.

Research output: Contribution to journalArticle

Are we approaching a water ceiling to maize yields in the United States?

Delucia, E. H., Chen, S., Guan, K., Peng, B., Li, Y., Gomez-Casanovas, N., Kantola, I. B., Bernacchi, C., Huang, Y., Long, S. P. & Ort, D. R., Jun 18 2019, In : Ecosphere. 10, 6, e02773.

Research output: Contribution to journalArticle

Open Access

Assembling and analysis of sanicula orthacantha chloroplast genome

Chen, Z., Yao, X., Downie, S. R. & Wang, Q., Apr 2019, In : Biodiversity Science. 27, 4, p. 366-372 7 p.

Research output: Contribution to journalArticle

Assembly of allele-aware, chromosomal-scale autopolyploid genomes based on Hi-C data

Zhang, X., Zhang, S., Zhao, Q., Ming, R. & Tang, H., Aug 1 2019, In : Nature Plants. 5, 8, p. 833-845 13 p.

Research output: Contribution to journalArticle

Assembly of the 373k gene space of the polyploid sugarcane genome reveals reservoirs of functional diversity in the world's leading biomass crop

Souza, G. M., Van Sluys, M. A., Lembke, C. G., Lee, H., Margarido, G. R. A., Hotta, C. T., Gaiarsa, J. W., Diniz, A. L., Oliveira, M. D. M., Ferreira, S. D. S., Nishiyama, M. Y., Ten-Caten, F., Ragagnin, G. T., Andrade, P. D. M., De Souza, R. F., Nicastro, G. G., Pandya, R., Kim, C., Guo, H., Durham, A. M. & 9 others, Carneiro, M. S., Zhang, J., Zhang, X., Zhang, Q., Ming, R., Schatz, M. C., Davidson, B., Paterson, A. H. & Heckerman, D., Dec 6 2019, In : GigaScience. 8, 12, giz129.

Research output: Contribution to journalArticle

Open Access

A subsidiary cell-localized glucose transporter promotes stomatal conductance and photosynthesis

Wang, H., Yan, S., Xin, H., Huang, W., Zhang, H., Teng, S., Yu, Y. C., Fernie, A. R., Lu, X., Li, P., Li, S., Zhang, C., Ruan, Y. L., Chen, L. Q. & Langa, Z., Jun 2019, In : Plant Cell. 31, 6, p. 1328-1343 16 p.

Research output: Contribution to journalArticle

Automated detection of thermoerosion in permafrost ecosystems using temporally dense Landsat image stacks

Lara, M. J., Chipman, M. L. & Hu, F. S., Feb 2019, In : Remote Sensing of Environment. 221, p. 462-473 12 p.

Research output: Contribution to journalArticle

Auxin regulation involved in gynoecium morphogenesis of papaya flowers

Zhou, P., Fatima, M., Ma, X., Liu, J. & Ming, R., Dec 1 2019, In : Horticulture Research. 6, 1, 119.

Research output: Contribution to journalArticle

Open Access

Beyond an ecological ideal gas law

O’Dwyer, J. P., Jan 1 2019, (Accepted/In press) In : Nature Ecology and Evolution.

Research output: Contribution to journalArticle

Biomass yield in a genetically diverse Miscanthus sinensis germplasm panel evaluated at five locations revealed individuals with exceptional potential

Clark, L. V., Dwiyanti, M. S., Anzoua, K. G., Brummer, J. E., Ghimire, B. K., Głowacka, K., Hall, M., Heo, K., Jin, X., Lipka, A. E., Peng, J., Yamada, T., Yoo, J. H., Yu, C. Y., Zhao, H., Long, S. P. & Sacks, E. J., Oct 1 2019, In : GCB Bioenergy. 11, 10, p. 1125-1145 21 p.

Research output: Contribution to journalArticle

Open Access

Black walnut alley cropping is economically competitive with row crops in the Midwest USA

Wolz, K. J. & DeLucia, E. H., Jan 2019, In : Ecological Applications. 29, 1, e01829.

Research output: Contribution to journalArticle

Bot-Flying

Berenbaum, M., Jun 7 2019, In : American Entomologist. 65, 2, p. 76-78

Research output: Contribution to journalArticle

BSD2 is a Rubisco-specific assembly chaperone, forms intermediary hetero-oligomeric complexes, and is nonlimiting to growth in tobacco

Conlan, B., Birch, R., Kelso, C., Holland, S., De Souza, A. P., Long, S. P., Beck, J. L. & Whitney, S. M., Apr 2019, In : Plant Cell and Environment. 42, 4, p. 1287-1301 15 p.

Research output: Contribution to journalArticle

Bundle sheath chloroplast volume can house sufficient Rubisco to avoid limiting C4 photosynthesis during chilling

Pignon, C. P., Lundgren, M. R., Osborne, C. P. & Long, S. P., Jan 1 2019, In : Journal of experimental botany. 70, 1, p. 357-365 9 p.

Research output: Contribution to journalArticle

Comparative Analysis of SUS Gene Family between Saccharum officinarum and Saccharum spontaneum

Shi, Y., Xu, H., Shen, Q., Lin, J., Wang, Y., Hua, X., Yao, W., Yu, Q., Ming, R. R. & Zhang, J., Sep 1 2019, In : Tropical Plant Biology. 12, 3, p. 174-185 12 p.

Research output: Contribution to journalArticle

Comparative genomics revealed the gene evolution and functional divergence of magnesium transporter families in Saccharum

Wang, Y., Hua, X., Xu, J., Chen, Z., Fan, T., Zeng, Z., Wang, H., Hour, A. L., Yu, Q., Ming, R. R. & Zhang, J., Jan 24 2019, In : BMC genomics. 20, 1, 5437.

Research output: Contribution to journalArticle

Comparing DNA, RNA and protein levels for measuring microbial dynamics in soil microcosms amended with nitrogen fertilizer

Orellana, L. H., Hatt, J. K., Iyer, R., Chourey, K., Hettich, R. L., Spain, J. C., Yang, W. H., Chee-Sanford, J. C., Sanford, R. A., Löffler, F. E. & Konstantinidis, K. T., Dec 1 2019, In : Scientific reports. 9, 1, 17630.

Research output: Contribution to journalArticle

Open Access

Consequences of climatic thresholds for projecting fire activity and ecological change

Young, A. M., Higuera, P. E., Abatzoglou, J. T., Duffy, P. A. & Hu, F. S., Apr 2019, In : Global Ecology and Biogeography. 28, 4, p. 521-532 12 p.

Research output: Contribution to journalArticle

Deleterious mutation burden and its association with complex traits in sorghum (Sorghum bicolor)

Valluru, R., Gazave, E. E., Fernandes, S. B., Ferguson, J. N., Lozano, R., Hirannaiah, P., Zuo, T., Brown, P. J., Leakey, A. D. B., Gore, M. A., Buckler, E. S. & Bandillo, N., Mar 2019, In : Genetics. 211, 3, p. 1075-1087 13 p.

Research output: Contribution to journalArticle

Differential gene expression among three sex types reveals a MALE STERILITY 1 (CpMS1) for sex differentiation in papaya

Zerpa-Catanho, D., Wai, J., Wang, M. L., Yu, LA., Nguyen, J. & Ming, R., Dec 9 2019, In : BMC Plant Biology. 19, 1, 545.

Research output: Contribution to journalArticle

Open Access

Directions for research and training in plant omics: Big Questions and Big Data

Argueso, C. T., Assmann, S. M., Birnbaum, K. D., Chen, S., Dinneny, J. R., Doherty, C. J., Eveland, A. L., Friesner, J., Greenlee, V. R., Law, J. A., Marshall-Colón, A., Mason, G. A., O'Lexy, R., Peck, S. C., Schmitz, R. J., Song, L., Stern, D., Varagona, M. J., Walley, J. W. & Williams, C. M., Apr 2019, In : Plant Direct. 3, 4, e00133.

Research output: Contribution to journalArticle

Open Access

Dissecting the nonlinear response of maize yield to high temperature stress with model-data integration

Zhu, P., Zhuang, Q., Archontoulis, S. V., Bernacchi, C. & Müller, C., Jul 2019, In : Global change biology. 25, 7, p. 2470-2484 15 p.

Research output: Contribution to journalArticle

Distinct Substrate Transport Mechanism Identified in Homologous Sugar Transporters

Cheng, K. J., Selvam, B., Chen, L. Q. & Shukla, D., Oct 10 2019, In : Journal of Physical Chemistry B. 123, 40, p. 8411-8418 8 p.

Research output: Contribution to journalArticle

Domestic Affairs

Berenbaum, M., Sep 18 2019, In : American Entomologist. 65, 3, p. 154-157 4 p.

Research output: Contribution to journalArticle

Dynamic Controls on Field-Scale Soil Nitrous Oxide Hot Spots and Hot Moments Across a Microtopographic Gradient

Krichels, A. H. & Yang, W. H., Nov 1 2019, In : Journal of Geophysical Research: Biogeosciences. 124, 11, p. 3618-3634 17 p.

Research output: Contribution to journalArticle