Research Output 1975 2019

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2019

A Comparative Analysis of Anthropogenic CO2 Emissions at City Level Using OCO-2 Observations: A Global Perspective

Fu, P., Xie, Y., Moore, C. E., Myint, S. W. & Bernacchi, C. J., Sep 1 2019, In : Earth's Future. 7, 9, p. 1058-1070 13 p.

Research output: Contribution to journalArticle

Open Access
global perspective
fossil fuel
seasonality
vegetation
carbon

A comparative analysis of complete plastid genomes from Prangos fedtschenkoi and Prangos lipskyi (Apiaceae)

Mustafina, F. U., Yi, D. K., Choi, K., Shin, C. H., Tojibaev, K. S. & Downie, S. R., Jan 2019, In : Ecology and Evolution. 9, 1, p. 364-377 14 p.

Research output: Contribution to journalArticle

Prangos
Apiaceae
plastid
genome
intergenic DNA

Alder distribution and expansion across a tundra hillslope: implications for local N cycling

Salmon, V. G., Breen, A. L., Kumar, J., Lara, M. J., Thornton, P. E., Wullschleger, S. D. & Iversen, C. M., 2019, (Accepted/In press) In : Frontiers in Plant Science.

Research output: Contribution to journalArticle

Open Access
Alnus
tundra
shrublands
savannas
plant communities

Ammonia flux measurements above a corn canopy using relaxed eddy accumulation and a flux gradient system

Nelson, A. J., Lichiheb, N., Koloutsou-Vakakis, S., Rood, M. J., Heuer, M., Myles, L. T., Joo, E., Miller, J. & Bernacchi, C., Jan 15 2019, In : Agricultural and Forest Meteorology. 264, p. 104-113 10 p.

Research output: Contribution to journalArticle

flux measurement
eddy
ammonia
maize
canopy

Analysis of genetic diversity of lychee (Litchi chinensis Sonn.) and wild forest relatives in the Sapindaceae from Vietnam using microsatellites

Tran, H., Kanzaki, S., Triest, L., Hormaza, I., Kuk, N. J., Ming, R., Bousquet, J., Khasa, D. & Van Damme, P., Dec 1 2019, In : Genetic Resources and Crop Evolution. 66, 8, p. 1653-1669 17 p.

Research output: Contribution to journalArticle

Sapindaceae
Litchi
Litchi chinensis
Vietnam
Microsatellite Repeats

A physical model-based method for retrieving urban land surface temperatures under cloudy conditions

Fu, P., Xie, Y., Weng, Q., Myint, S., Meacham-Hensold, K. & Bernacchi, C., Sep 1 2019, In : Remote Sensing of Environment. 230, 111191.

Research output: Contribution to journalArticle

physical models
surface temperature
land surface
Mean square error
Temperature

Are we approaching a water ceiling to maize yields in the United States?

Delucia, E. H., Chen, S., Guan, K., Peng, B., Li, Y., Gomez-Casanovas, N., Kantola, I. B., Bernacchi, C., Huang, Y., Long, S. P. & Ort, D. R., Jun 18 2019, In : Ecosphere. 10, 6, e02773.

Research output: Contribution to journalArticle

Open Access
maize
corn
vapor pressure
water
water use efficiency

Assembling and analysis of sanicula orthacantha chloroplast genome

Chen, Z., Yao, X., Downie, S. R. & Wang, Q., Apr 2019, In : Biodiversity Science. 27, 4, p. 366-372 7 p.

Research output: Contribution to journalArticle

Sanicula
chloroplast
genome
gene
genes

Assembly of allele-aware, chromosomal-scale autopolyploid genomes based on Hi-C data

Zhang, X., Zhang, S., Zhao, Q., Ming, R. R. & Tang, H., Aug 1 2019, In : Nature Plants. 5, 8, p. 833-845 13 p.

Research output: Contribution to journalArticle

autopolyploidy
alleles
genome
chromosomes
diploidy

A subsidiary cell-localized glucose transporter promotes stomatal conductance and photosynthesis

Wang, H., Yan, S., Xin, H., Huang, W., Zhang, H., Teng, S., Yu, Y. C., Fernie, A. R., Lu, X., Li, P., Li, S., Zhang, C., Ruan, Y. L., Chen, L. Q. & Langa, Z., Jun 2019, In : Plant Cell. 31, 6, p. 1328-1343 16 p.

Research output: Contribution to journalArticle

glucose transporters
Facilitative Glucose Transport Proteins
Photosynthesis
stomatal conductance
Clustered Regularly Interspaced Short Palindromic Repeats

Automated detection of thermoerosion in permafrost ecosystems using temporally dense Landsat image stacks

Lara, M. J., Chipman, M. L. & Hu, F. S., Feb 2019, In : Remote Sensing of Environment. 221, p. 462-473 12 p.

Research output: Contribution to journalArticle

Permafrost
permafrost
Landsat
Ecosystems
Lakes

Auxin regulation involved in gynoecium morphogenesis of papaya flowers

Zhou, P., Fatima, M., Ma, X., Liu, J. & Ming, R., Dec 1 2019, In : Horticulture Research. 6, 1, 119.

Research output: Contribution to journalArticle

Open Access
Carica
gynoecium
Indoleacetic Acids
papayas
Morphogenesis

Biomass yield in a genetically diverse Miscanthus sinensis germplasm panel evaluated at five locations revealed individuals with exceptional potential

Clark, L. V., Dwiyanti, M. S., Anzoua, K. G., Brummer, J. E., Ghimire, B. K., Głowacka, K., Hall, M., Heo, K., Jin, X., Lipka, A. E., Peng, J., Yamada, T., Yoo, J. H., Yu, C. Y., Zhao, H., Long, S. P. & Sacks, E. J., Oct 1 2019, In : GCB Bioenergy. 11, 10, p. 1125-1145 21 p.

Research output: Contribution to journalArticle

Open Access
Miscanthus giganteus
Miscanthus sinensis
germplasm
Biomass
biomass

Black walnut alley cropping is economically competitive with row crops in the Midwest USA

Wolz, K. J. & DeLucia, E. H., Jan 2019, In : Ecological Applications. 29, 1, e01829.

Research output: Contribution to journalArticle

alley cropping
plantation forestry
crop
discount rate
profitability

Bot-Flying

Berenbaum, M., Jun 7 2019, In : American Entomologist. 65, 2, p. 76-78

Research output: Contribution to journalArticle

BSD2 is a Rubisco-specific assembly chaperone, forms intermediary hetero-oligomeric complexes, and is nonlimiting to growth in tobacco

Conlan, B., Birch, R., Kelso, C., Holland, S., De Souza, A. P., Long, S. P., Beck, J. L. & Whitney, S. M., Apr 2019, In : Plant Cell and Environment. 42, 4, p. 1287-1301 15 p.

Research output: Contribution to journalArticle

Ribulose-Bisphosphate Carboxylase
ribulose-bisphosphate carboxylase
Tobacco
tobacco
Growth

Bundle sheath chloroplast volume can house sufficient Rubisco to avoid limiting C4 photosynthesis during chilling

Pignon, C. P., Lundgren, M. R., Osborne, C. P. & Long, S. P., Jan 1 2019, In : Journal of experimental botany. 70, 1, p. 357-365 9 p.

Research output: Contribution to journalArticle

Ribulose-Bisphosphate Carboxylase
C4 photosynthesis
Photosynthesis
ribulose-bisphosphate carboxylase
Chloroplasts

Comparative Analysis of SUS Gene Family between Saccharum officinarum and Saccharum spontaneum

Shi, Y., Xu, H., Shen, Q., Lin, J., Wang, Y., Hua, X., Yao, W., Yu, Q., Ming, R. R. & Zhang, J., Sep 1 2019, In : Tropical Plant Biology. 12, 3, p. 174-185 12 p.

Research output: Contribution to journalArticle

Saccharum spontaneum
Saccharum
Saccharum officinarum
sucrose synthase
Genes

Comparative genomics revealed the gene evolution and functional divergence of magnesium transporter families in Saccharum

Wang, Y., Hua, X., Xu, J., Chen, Z., Fan, T., Zeng, Z., Wang, H., Hour, A. L., Yu, Q., Ming, R. R. & Zhang, J., Jan 24 2019, In : BMC genomics. 20, 1, 5437.

Research output: Contribution to journalArticle

Saccharum
Genomics
Magnesium
Genes
Mya

Consequences of climatic thresholds for projecting fire activity and ecological change

Young, A. M., Higuera, P. E., Abatzoglou, J. T., Duffy, P. A. & Hu, F. S., Apr 2019, In : Global Ecology and Biogeography. 28, 4, p. 521-532 12 p.

Research output: Contribution to journalArticle

tundra
boreal forests
uncertainty
ecosystems
climate

Deleterious mutation burden and its association with complex traits in sorghum (Sorghum bicolor)

Valluru, R., Gazave, E. E., Fernandes, S. B., Ferguson, J. N., Lozano, R., Hirannaiah, P., Zuo, T., Brown, P. J., Leakey, A., Gore, M. A., Buckler, E. S. & Bandillo, N., Mar 2019, In : Genetics. 211, 3, p. 1075-1087 13 p.

Research output: Contribution to journalArticle

Sorghum
Mutation
Biomass
Genome
Starch

Directions for research and training in plant omics: Big Questions and Big Data

Argueso, C. T., Assmann, S. M., Birnbaum, K. D., Chen, S., Dinneny, J. R., Doherty, C. J., Eveland, A. L., Friesner, J., Greenlee, V. R., Law, J. A., Marshall-Colón, A., Mason, G. A., O'Lexy, R., Peck, S. C., Schmitz, R. J., Song, L., Stern, D., Varagona, M. J., Walley, J. W. & Williams, C. M., Apr 2019, In : Plant Direct. 3, 4, e00133.

Research output: Contribution to journalArticle

Open Access
training (plants)
Education
plant biology
Research
Arabidopsis

Dissecting the nonlinear response of maize yield to high temperature stress with model-data integration

Zhu, P., Zhuang, Q., Archontoulis, S. V., Bernacchi, C. & Müller, C., Jul 2019, In : Global change biology. 25, 7, p. 2470-2484 15 p.

Research output: Contribution to journalArticle

Data integration
maize
Crops
crop
Temperature

Distinct Substrate Transport Mechanism Identified in Homologous Sugar Transporters

Cheng, K. J., Selvam, B., Chen, L. & Shukla, D., Oct 10 2019, In : Journal of Physical Chemistry B. 123, 40, p. 8411-8418 8 p.

Research output: Contribution to journalArticle

transporter
sugars
Sugars
glucose
Glucose

Domestic Affairs

Berenbaum, M., Sep 18 2019, In : American Entomologist. 65, 3, p. 154-157

Research output: Contribution to journalArticle

Ecological and Genomic Attributes of Novel Bacterial Taxa That Thrive in Subsurface Soil Horizons

Brewer, T. E., Aronson, E. L., Arogyaswamy, K., Billings, S. A., Botthoff, J. K., Campbell, A. N., Dove, N. C., Fairbanks, D., Gallery, R. E., Hart, S. C., Kaye, J., King, G., Logan, G., Lohse, K. A., Maltz, M. R., Mayorga, E., O'Neill, C., Owens, S. M., Packman, A., Pett-Ridge, J. & 5 others, Plante, A. F., Richter, D. D., Silver, W. L., Yang, W. & Fierer, N., Oct 1 2019, In : mBio. 10, 5

Research output: Contribution to journalArticle

Open Access
Soil
Euryarchaeota
Chloroflexi
Genome
Microbiota

Economical synthesis of 14C-labeled aminolevulinic acid for specific in situ labeling of plant tetrapyrroles

Schwarz, E. M. & Ort, D. R., Nov 1 2019, In : Photosynthesis research. 142, 2, p. 241-247 7 p.

Research output: Contribution to journalArticle

Tetrapyrroles
Aminolevulinic Acid
aminolevulinic acid
Labeling
synthesis

Effects of triclosan and triclocarban on denitrification and N2O emissions in paddy soil

Chen, S., Chee-Sanford, J. C., Yang, W. H., Sanford, R. A., Chen, J., Yan, X. & Shan, J., Dec 10 2019, In : Science of the Total Environment. 695, 133782.

Research output: Contribution to journalArticle

Triclosan
Denitrification
denitrification
Soils
soil
Panicum virgatum
bioenergy
ozone
nutrient content
feedstocks
Open Access
Panicum virgatum
bioenergy
ozone
nutrient content
feedstocks

Evolution and Expression Analysis of Starch Synthase Gene Families in Saccharum spontaneum

Ma, P., Yuan, Y., Shen, Q., Jiang, Q., Hua, X., Zhang, Q., Zhang, M., Ming, R. R. & Zhang, J., Sep 1 2019, In : Tropical Plant Biology. 12, 3, p. 158-173 16 p.

Research output: Contribution to journalArticle

Starch Synthase
Saccharum spontaneum
Saccharum
starch synthase
Genes

Evolutionary shifts in fruit dispersal syndromes in Apiaceae tribe Scandiceae

Wojewódzka, A., Baczyński, J., Banasiak, Ł., Downie, S. R., Czarnocka-Cieciura, A., Gierek, M., Frankiewicz, K. & Spalik, K., May 1 2019, In : Plant Systematics and Evolution. 305, 5, p. 401-414 14 p.

Research output: Contribution to journalArticle

Open Access
Apiaceae
fruit
fruits
anemochory
spine (bones)

Excessive rainfall leads to maize yield loss of a comparable magnitude to extreme drought in the United States

Li, Y., Guan, K., Schnitkey, G. D., DeLucia, E. & Peng, B., Jul 2019, In : Global change biology. 25, 7, p. 2325-2337 13 p.

Research output: Contribution to journalArticle

Open Access
Drought
Rain
drought
maize
Crops

Exploring the differential mechanisms of carotenoid biosynthesis in the yellow peel and red flesh of papaya

Shen, Y. H., Yang, F. Y., Lu, B. G., Zhao, W. W., Jiang, T., Feng, L., Chen, X. J. & Ming, R., Jan 16 2019, In : BMC genomics. 20, 1, 49.

Research output: Contribution to journalArticle

Carica
Carotenoids
Biosynthetic Pathways
Fruit
Lutein

Field-grown tobacco plants maintain robust growth while accumulating large quantities of a bacterial cellulase in chloroplasts

Schmidt, J. A., McGrath, J. M., Hanson, M. R., Long, S. P. & Ahner, B. A., Jul 1 2019, In : Nature Plants. 5, 7, p. 715-721 7 p.

Research output: Contribution to journalArticle

endo-1,4-beta-glucanase
tobacco
chloroplasts
recombinant proteins
proteins

Floral Organogenesis in Three Members of the Tribe Delphinieae (Ranunculaceae)

Chang, H., Downie, S. R., Peng, H. & Sun, F., Nov 11 2019, In : Plants. 8, 11, 493.

Research output: Contribution to journalArticle

Open Access
Consolida ajacis
Ranunculaceae
organogenesis
calyx
flower

Genome-Wide Analysis of Nitrate Transporter (NRT/NPF) Family in Sugarcane Saccharum spontaneum L.

Wang, J., Li, Y., Zhu, F., Ming, R. R. & Chen, L., Sep 1 2019, In : Tropical Plant Biology. 12, 3, p. 133-149 17 p.

Research output: Contribution to journalArticle

Saccharum spontaneum
Saccharum
sugarcane
transporters
nitrates

Genome-wide association and genomic prediction for biomass yield in a genetically diverse Miscanthus sinensis germplasm panel phenotyped at five locations in Asia and North America

Clark, L. V., Dwiyanti, M. S., Anzoua, K. G., Brummer, J. E., Ghimire, B. K., Głowacka, K., Hall, M., Heo, K., Jin, X., Lipka, A. E., Peng, J., Yamada, T., Yoo, J. H., Yu, C. Y., Zhao, H., Long, S. P. & Sacks, E. J., Aug 2019, In : GCB Bioenergy. 11, 8, p. 988-1007 20 p.

Research output: Contribution to journalArticle

Open Access
Miscanthus sinensis
germplasm
Nucleotides
Polymorphism
single nucleotide polymorphism

Genomic and Allelic Analyses of Laccase Genes in Sugarcane (Saccharum spontaneum L.)

Zhang, W., Lin, J., Dong, F., Ma, Q., Wu, S., Ma, X., Fatima, M., Jia, H. & Ming, R., Sep 1 2019, In : Tropical Plant Biology. 12, 3, p. 219-229 11 p.

Research output: Contribution to journalArticle

Saccharum spontaneum
Laccase
Saccharum
laccase
sugarcane
Ananas
Crassulacean acid metabolism
Aquaporins
Boron
aquaporins

High-throughput field phenotyping using hyperspectral reflectance and partial least squares regression (PLSR) reveals genetic modifications to photosynthetic capacity

Meacham-Hensold, K., Montes, C. M., Wu, J., Guan, K., Fu, P., Ainsworth, E. A., Pederson, T., Moore, C. E., Brown, K. L., Raines, C. & Bernacchi, C. J., Sep 15 2019, In : Remote Sensing of Environment. 231, 111176.

Research output: Contribution to journalArticle

Open Access
genetic engineering
reflectance
least squares
Throughput
phenotype

Historical soil drainage mediates the response of soil greenhouse gas emissions to intense precipitation events

Krichels, A., Delucia, E. H., Sanford, R. A., Chee-Sanford, J. & Yang, W., Feb 15 2019, In : Biogeochemistry. 142, 3, p. 425-442 18 p.

Research output: Contribution to journalArticle

soil drainage
soil gas
Gas emissions
Greenhouse gases
Drainage

Honey Bees and Environmental Stress: Toxicologic Pathology of a Superorganism

Berenbaum, M. R. & Liao, L. H., Jan 1 2019, (Accepted/In press) In : Toxicologic Pathology.

Research output: Contribution to journalArticle

Honey
Bees
Pathology
Pesticides
Nurses
Open Access
artificial intelligence
reflectance
least squares
operator regions
leaves

Identification and Expression Analysis of TCP Genes in Saccharum spontaneum L

Lin, J., Zhu, M., Cai, M., Zhang, W., Fatima, M., Jia, H., Li, F. & Ming, R., Sep 1 2019, In : Tropical Plant Biology. 12, 3, p. 206-218 13 p.

Research output: Contribution to journalArticle

Saccharum spontaneum
Saccharum
sugarcane
Sorghum (Poaceae)
Genes

Implementation of the effect of urease inhibitor on ammonia emissions following urea-based fertilizer application at a Zea mays field in central Illinois: A study with SURFATM-NH 3 model

Lichiheb, N., Myles, L. T., Personne, E., Heuer, M., Buban, M., Nelson, A. J., Koloutsou-Vakakis, S., Rood, M. J., Joo, E., Miller, J. & Bernacchi, C., May 15 2019, In : Agricultural and Forest Meteorology. 269-270, p. 78-87 10 p.

Research output: Contribution to journalArticle

urease inhibitors
fertilizer application
urea
inhibitor
ammonia

Increased temperatures may safeguard the nutritional quality of crops under future elevated CO2 concentrations

Köhler, I. H., Huber, S. C., Bernacchi, C. J. & Baxter, I. R., Mar 2019, In : Plant Journal. 97, 5, p. 872-886 15 p.

Research output: Contribution to journalArticle

Nutritive Value
nutritive value
carbon dioxide
Seeds
Temperature

Invasive perennial forb effects on gross soil nitrogen cycling and nitrous oxide fluxes depend on phenology

Portier, E., Silver, W. L. & Yang, W., Jul 2019, In : Ecology. 100, 7, e02716.

Research output: Contribution to journalArticle

soil nitrogen
nitrous oxide
phenology
Lepidium latifolium
nitrogen

In vivo evidence for a regulatory role of phosphorylation of Arabidopsis Rubisco activase at the Thr78 site

Kim, S. Y., Harvey, C. M., Giese, J., Lassowskat, I., Singh, V., Cavanagh, A. P., Spalding, M. H., Finkemeier, I., Ort, D. R. & Huber, S. C., Sep 10 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 37, p. 18723-18731 9 p.

Research output: Contribution to journalArticle

Open Access
Ribulose-Bisphosphate Carboxylase
Tissue Plasminogen Activator
Threonine
Phosphorylation
Light

Iron Redox Reactions Can Drive Microtopographic Variation in Upland Soil Carbon Dioxide and Nitrous Oxide Emissions

Krichels, A. H., Sipic, E. & Yang, W. H., Aug 29 2019, In : Soil Systems. 3, 3, 60.

Research output: Contribution to journalArticle

Open Access
nitrous oxide
soil carbon
carbon dioxide
iron
soil