Research Output

2016

Palaeodata-informed modelling of large carbon losses from recent burning of boreal forests

Kelly, R., Genet, H., McGuire, A. D. & Hu, F. S., Jan 1 2016, In : Nature Climate Change. 6, 1, p. 79-82 4 p.

Research output: Contribution to journalArticle

Pastinaca erzincanensis (Apiaceae), A New Species from Eastern Turkey and Its Phylogenetic Position within Tordylieae

Menemen, Y., Kandemir, A. & Downie, S. R., Nov 2016, In : Annales Botanici Fennici. 53, 5-6, p. 373-382 10 p.

Research output: Contribution to journalArticle

Phylogenetic evidence for a fusion of archaeal and bacterial SemiSWEETs to form eukaryotic SWEETs and identification of SWEET hexose transporters in the amphibian chytrid pathogen Batrachochytrium dendrobatidis

Hu, Y. B., Sosso, D., Qu, X. Q., Chen, L. Q., Ma, L., Chermak, D., Zhang, D. C. & Frommer, W. B., Oct 2016, In : FASEB Journal. 30, 10, p. 3644-3654 11 p.

Research output: Contribution to journalArticle

Phylogenetic turnover along local environmental gradients in tropical forest communities

Baldeck, C. A., Kembel, S. W., Harms, K. E., Yavitt, J. B., John, R., Turner, B. L., Madawala, S., Gunatilleke, N., Gunatilleke, S., Bunyavejchewin, S., Kiratiprayoon, S., Yaacob, A., Supardi, M. N. N., Valencia, R., Navarrete, H., Davies, S. J., Chuyong, G. B., Kenfack, D., Thomas, D. W. & Dalling, J. W., Oct 1 2016, In : Oecologia. 182, 2, p. 547-557 11 p.

Research output: Contribution to journalArticle

Physiological evidence for plasticity in glycolate/glycerate transport during photorespiration

Walker, B. J., South, P. F. & Ort, D. R., Jul 1 2016, In : Photosynthesis research. 129, 1, p. 93-103 11 p.

Research output: Contribution to journalArticle

Pineapple Genome: A Reference for Monocots and CAM Photosynthesis

Ming, R., Wai, C. M. & Guyot, R., Nov 1 2016, In : Trends in Genetics. 32, 11, p. 690-696 7 p.

Research output: Contribution to journalShort survey

Plants in silico: Why, why now and what?-an integrative platform for plant systems biology research

Zhu, X. G., Lynch, J. P., Lebauer, D. S., Millar, A. J., Stitt, M. & Long, S. P., May 1 2016, In : Plant Cell and Environment. 39, 5, p. 1049-1057 9 p.

Research output: Contribution to journalReview article

Productivity of North American grasslands is increased under future climate scenarios despite rising aridity

Hufkens, K., Keenan, T. F., Flanagan, L. B., Scott, R. L., Bernacchi, C. J., Joo, E., Brunsell, N. A., Verfaillie, J. & Richardson, A. D., Jul 1 2016, In : Nature Climate Change. 6, 7, p. 710-714 5 p.

Research output: Contribution to journalArticle

Reproducing static and dynamic biodiversity patterns in tropical forests: The critical role of environmental variance

Fung, T., O'Dwyer, J. P., Rahman, K. A. B. D., Fletcher, C. D. & Chisholm, R. A., May 1 2016, In : Ecology. 97, 5, p. 1207-1217 11 p.

Research output: Contribution to journalArticle

Rhizobia: tractable models for bacterial evolutionary ecology

Heath, K. D. & Grillo, M. A., Dec 1 2016, In : Environmental Microbiology. 18, 12, p. 4307-4311 5 p.

Research output: Contribution to journalArticle

Seedling growth responses to phosphorus reflect adult distribution patterns of tropical trees

Zalamea, P. C., Turner, B. L., Winter, K., Jones, F. A., Sarmiento, C. & Dalling, J. W., Oct 1 2016, In : The New phytologist. 212, 2, p. 400-408 9 p.

Research output: Contribution to journalArticle

Soil nutrient removal by four potential bioenergy crops: Zea mays, Panicum virgatum, Miscanthus×giganteus, and prairie

Masters, M. D., Black, C. K., Kantola, I. B., Woli, K. P., Voigt, T., David, M. B. & DeLucia, E. H., Jan 15 2016, In : Agriculture, Ecosystems and Environment. 216, p. 51-60 10 p.

Research output: Contribution to journalArticle

Spatially Aware Dictionary Learning and Coding for Fossil Pollen Identification

Kong, S., Punyasena, S. & Fowlkes, C., Dec 16 2016, Proceedings - 29th IEEE Conference on Computer Vision and Pattern Recognition Workshops, CVPRW 2016. IEEE Computer Society, p. 1305-1314 10 p. 7789655. (IEEE Computer Society Conference on Computer Vision and Pattern Recognition Workshops).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Speaking of insects⋯

Berenbaum, M. R., Sep 23 2016, In : Science. 353, 6306, 1 p.

Research output: Contribution to journalEditorial

Structure, phylogeny, allelic haplotypes and expression of sucrose transporter gene families in Saccharum

Zhang, Q., Hu, W., Zhu, F., Wang, L., Yu, Q., Ming, R. & Zhang, J., Feb 1 2016, In : BMC genomics. 17, 1, 88.

Research output: Contribution to journalArticle

Techno-economic analysis of biodiesel and ethanol co-production from lipid-producing sugarcane

Huang, H., Long, S. & Singh, V., May 1 2016, In : Biofuels, Bioproducts and Biorefining. 10, 3, p. 299-315 17 p.

Research output: Contribution to journalArticle

Technoeconomic Analysis of Biodiesel and Ethanol Production from Lipid-Producing Sugarcane and Sweet Sorghum

Huang, H., Long, S. P., Clemente, T. E. & Singh, V., Dec 2016, In : Industrial Biotechnology. 12, 6, p. 357-365 9 p.

Research output: Contribution to journalArticle

The Costs of Photorespiration to Food Production Now and in the Future

Walker, B. J., Vanloocke, A., Bernacchi, C. J. & Ort, D. R., Apr 29 2016, In : Annual Review of Plant Biology. 67, p. 107-129 23 p.

Research output: Contribution to journalReview article

The influence of drought and heat stress on long-term carbon fluxes of bioenergy crops grown in the Midwestern USA

Joo, E., Hussain, M. Z., Zeri, M., Masters, M. D., Miller, J. N., Gomez-Casanovas, N., DeLucia, E. H. & Bernacchi, C. J., Sep 1 2016, In : Plant Cell and Environment. 39, 9, p. 1928-1940 13 p.

Research output: Contribution to journalArticle

The plastid casein kinase 2 phosphorylates rubisco activase at the Thr-78 site but is not essential for regulation of rubisco activation state

Kim, S. Y., Bender, K. W., Walker, B. J., Zielinski, R. E., Spalding, M. H., Ort, D. R. & Huber, S. C., Mar 31 2016, In : Frontiers in Plant Science. 7, MAR2016, 404.

Research output: Contribution to journalArticle

The role of the Southern Hemisphere in the evolutionary history of Apiaceae, a mostly north temperate plant family

Calviño, C. I., Teruel, F. E. & Downie, S. R., Feb 1 2016, In : Journal of Biogeography. 43, 2, p. 398-409 12 p.

Research output: Contribution to journalArticle

Transcriptome profiling revealed stress-induced and disease resistance genes up-regulated in PRSV resistant transgenic papaya

Fang, J., Lin, A., Qiu, W., Cai, H., Umar, M., Chen, R. & Ming, R., Jun 16 2016, In : Frontiers in Plant Science. 7, JUNE2016, 855.

Research output: Contribution to journalArticle

Two tropical conifers show strong growth and water-use efficiency responses to altered CO2 concentration

Dalling, J. W., Cernusak, L. A., Winter, K., Aranda, J., Garcia, M., Virgo, A., Cheesman, A. W., Baresch, A., Jaramillo, C. & Turner, B. L., Nov 1 2016, In : Annals of botany. 118, 6, p. 1113-1125 13 p.

Research output: Contribution to journalArticle

Urbana house ants 2.0: Revisiting M. R. Smith's 1926 survey of house-infesting ants in central Illinois after 87 years

Belcher, A. K., Berenbaum, M. R. & Suarez, A. V., Jan 1 2016, In : American Entomologist. 62, 3, p. 182-193 12 p.

Research output: Contribution to journalArticle

Variation in ectomycorrhizal fungal communities associated with Oreomunnea mexicana (Juglandaceae) in a Neotropical montane forest

Corrales, A., Arnold, A. E., Ferrer, A., Turner, B. L. & Dalling, J. W., Jan 1 2016, In : Mycorrhiza. 26, 1, p. 1-17 17 p.

Research output: Contribution to journalArticle

Variation in wood nutrients along a tropical soil fertility gradient

Heineman, K. D., Turner, B. L. & Dalling, J. W., Jul 1 2016, In : The New phytologist. 211, 2, p. 440-454 15 p.

Research output: Contribution to journalArticle

Visual recognition software for binary classification and its application to spruce pollen identification

Tcheng, D. K., Nayak, A. K., Fowlkes, C. C. & Punyasena, S. W., Feb 2016, In : PloS one. 11, 2, e0148879.

Research output: Contribution to journalArticle

2015

A 400-year isotopic record of seabird response to eastern tropical Pacific productivity

Conroy, J. L., Collins, A. F., Overpeck, J. T., Bush, M. B., Cole, J. E. & Anderson, D. J., Jul 1 2015, In : Geo: Geography and Environment. 2, 2, p. 137-147 11 p.

Research output: Contribution to journalArticle

AAAS annual election: Preliminary announcement

Anderson, J. L., Hockfield, S., Beall, C. M., Berenbaum, M. R., Miranda, M. L., Stuss, D. T., Borchelt, R. E., Clark, A. M., Dunwoody, S., Francisco, J. S., Graham, S. L., Harthorn, B. H., Press, W. H. & Raven, P. H., Sep 25 2015, In : Science. 349, 6255, 1 p.

Research output: Contribution to journalComment/debate

A cascade of sequentially expressed sucrose transporters in the seed coat and endosperm provides nutrition for the arabidopsis embryo

Chen, L. Q., Lin, I. W., Qu, X. Q., Sosso, D., McFarlane, H. E., Londoño, A., Samuels, A. L. & Frommer, W. B., Jan 1 2015, In : Plant Cell. 27, 3, p. 607-619 13 p.

Research output: Contribution to journalArticle

A dietary phytochemical alters caste-associated gene expression in honey bees

Mao, W., Schuler, M. A. & Berenbaum, M. R., Aug 2015, In : Science Advances. 1, 7, e1500795.

Research output: Contribution to journalArticle

A late-Quaternary perspective on atmospheric pCO2, climate, and fire as drivers of C4-grass abundance

Urban, M. A., Nelson, D. M., Street-Perrott, F. A., Verschuren, D. & Hu, F. S., Mar 1 2015, In : Ecology. 96, 3, p. 642-653 12 p.

Research output: Contribution to journalArticle

ALLMAPS: Robust scaffold ordering based on multiple maps

Tang, H., Zhang, X., Miao, C., Zhang, J., Ming, R., Schnable, J. C., Schnable, P. S., Lyons, E. & Lu, J., Jan 13 2015, In : Genome biology. 16, 1, 3.

Research output: Contribution to journalArticle

A multi-proxy climate reconstruction of western Illinois based on late Wisconsin episode loess

Nash, Jr., T. A., Conroy, J. & J. L., G., 2015, Abstracts with Programs - Geological Society of America. Boulder, CO: Geological Society of America, Vol. 47. p. 88

Research output: Chapter in Book/Report/Conference proceedingConference contribution

An analysis of ozone damage to historical maize and soybean yields in the United States

McGrath, J. M., Betzelberger, A. M., Wang, S., Shook, E., Zhu, X. G., Long, S. P. & Ainsworth, E. A., Nov 17 2015, In : Proceedings of the National Academy of Sciences of the United States of America. 112, 46, p. 14390-14395 6 p.

Research output: Contribution to journalArticle

An autophosphorylation site database for leucine-rich repeat receptor-like kinases in Arabidopsis thaliana

Mitra, S. K., Chen, R., Dhandaydham, M., Wang, X., Blackburn, R. K., Kota, U., Goshe, M. B., Schwartz, D., Huber, S. C. & Clouse, S. D., Jun 1 2015, In : Plant Journal. 82, 6, p. 1042-1060 19 p.

Research output: Contribution to journalArticle

Application of optical topometry to analysis of the plant epidermis

Haus, M. J., Kelsch, R. D. & Jacobs, T. W., Sep 2015, In : Plant physiology. 169, 2, p. 946-959 14 p.

Research output: Contribution to journalArticle

Arctic tundra fires: Natural variability and responses to climate change

Hu, F. S., Higuera, P. E., Duffy, P., Chipman, M. L., Rocha, A. V., Young, A. M., Kelly, R. & Dietze, M. C., Sep 1 2015, In : Frontiers in Ecology and the Environment. 13, 7, p. 369-377 9 p.

Research output: Contribution to journalReview article

A roadmap for research on crassulacean acid metabolism (CAM) to enhance sustainable food and bioenergy production in a hotter, drier world

Yang, X., Cushman, J. C., Borland, A. M., Edwards, E. J., Wullschleger, S. D., Tuskan, G. A., Owen, N. A., Griffiths, H., Smith, J. A. C., De Paoli, H. C., Weston, D. J., Cottingham, R., Hartwell, J., Davis, S. C., Silvera, K., Ming, R., Schlauch, K., Abraham, P., Stewart, J. R., Guo, H. B. & 31 others, Albion, R., Ha, J., Lim, S. D., Wone, B. W. M., Yim, W. C., Garcia, T., Mayer, J. A., Petereit, J., Nair, S. S., Casey, E., Hettich, R. L., Ceusters, J., Ranjan, P., Palla, K. J., Yin, H., Reyes-García, C., Andrade, J. L., Freschi, L., Beltrán, J. D., Dever, L. V., Boxall, S. F., Waller, J., Davies, J., Bupphada, P., Kadu, N., Winter, K., Sage, R. F., Aguilar, C. N., Schmutz, J., Jenkins, J. & Holtum, J. A. M., Aug 1 2015, In : New Phytologist. 207, 3, p. 491-504 14 p.

Research output: Contribution to journalComment/debate

Assembling allopolyploid genomes: No longer formidable

Ming, R. & Man Wai, C., Jan 31 2015, In : Genome biology. 16, 1, 27.

Research output: Contribution to journalArticle

AtNIGT1/HRS1 integrates nitrate and phosphate signals at the Arabidopsis root tip

Medici, A., Marshall-Colon, A., Ronzier, E., Szponarski, W., Wang, R., Gojon, A., Crawford, N. M., Ruffel, S., Coruzzi, G. M. & Krouk, G., Feb 27 2015, In : Nature communications. 6, 6274.

Research output: Contribution to journalArticle

Backbones of evolutionary history test biodiversity theory for microbes

O'Dwyer, J. P., Kembel, S. W., Sharpton, T. J. & Pacala, S. W., Jul 7 2015, In : Proceedings of the National Academy of Sciences of the United States of America. 112, 27, p. 8356-8361 6 p.

Research output: Contribution to journalArticle

Bees in bonnets (and purses)

Berenbaum, M., Jun 1 2015, In : American Entomologist. 61, 2, p. 69-71 3 p.

Research output: Contribution to journalArticle

Bioenergy crop greenhouse gas mitigation potential under a range of management practices

Hudiburg, T. W., Davis, S. C., Parton, W. & Delucia, E. H., Mar 1 2015, In : GCB Bioenergy. 7, 2, p. 366-374 9 p.

Research output: Contribution to journalArticle

Biogeochemical consequences of regional land use change to a biofuel crop in the southeastern United States

Duval, B. D., Hartman, M., Marx, E., Parton, W. J., Long, S. P. & DeLucia, E. H., Dec 1 2015, In : Ecosphere. 6, 12, 265.

Research output: Contribution to journalArticle

Biophysical impacts of climate-smart agriculture in the Midwest United States

Bagley, J. E., Miller, J. & Bernacchi, C. J., Sep 1 2015, In : Plant, Cell and Environment. 38, 9, p. 1913-1930 18 p.

Research output: Contribution to journalReview article