Research Output 1971 2019

2015

Meeting the global food demand of the future by engineering crop photosynthesis and yield potential

Long, S. P., Marshall-Colon, A. & Zhu, X. G., Mar 26 2015, In : Cell. 161, 1, p. 56-66 11 p., 8102.

Research output: Contribution to journalReview article

Genetic Engineering
Photosynthesis
Computer Simulation
Crops
Food

Microbially mediated nitrogen retention and loss in a salt marsh soil http://www.esajournals.org/doi/pdf/10.1890/ES14-00179.1

Yang, W., Traut, B. H. & Silver, W. L., Jan 1 2015, In : Ecosphere. 6, 1, 7.

Research output: Contribution to journalArticle

salt marsh soils
monoculture
saltmarsh
plant communities
mineralization

Molecular phylogeography and ecological niche modelling of a widespread herbaceous climber, Tetrastigma hemsleyanum (Vitaceae): Insights into Plio-Pleistocene range dynamics of evergreen forest in subtropical China

Wang, Y. H., Jiang, W. M., Comes, H. P., Hu, F. S., Qiu, Y. X. & Fu, C. X., Apr 1 2015, In : New Phytologist. 206, 2, p. 852-867 16 p.

Research output: Contribution to journalArticle

Vitaceae
Tetrastigma
Phylogeography
phylogeography
China

Origin and domestication of papaya Yh chromosome

VanBuren, R., Zeng, F., Chen, C., Zhang, J., Wai, C. M., Han, J., Aryal, R., Gschwend, A. R., Wang, J., Na, J. K., Huang, L., Zhang, L., Miao, W., Gou, J., Arro, J., Guyot, R., Moore, R. C., Wang, M. L., Zee, F., Charlesworth, D. & 3 others, Moore, P. H., Yu, Q. & Ming, R. R., Apr 1 2015, In : Genome Research. 25, 4, p. 524-533 10 p.

Research output: Contribution to journalArticle

Carica
Chromosomes
Haplotypes
Mutation
Civilization

P450s in plants, insects, and their fungal pathogens

Schuler, M. A., Jan 1 2015, Cytochrome P450: Structure, Mechanism, and Biochemistry, Fourth Edition. Springer International Publishing, p. 409-449 41 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Pathogens
Insects
Genes
Mixed Function Oxygenases
Biosynthetic Pathways

Patterns of Genetic Diversity in the Globally Invasive Species Wild Parsnip (Pastinaca sativa)

Jogesh, T., Peery, R., Downie, S. R. & Berenbaum, M. R., Oct 1 2015, In : Invasive Plant Science and Management. 8, 4, p. 415-429 15 p.

Research output: Contribution to journalArticle

Pastinaca sativa
parsnips
invasive species
genetic variation
haplotypes

Pharaoh's Dream Revisited: An Integrated US Midwest Field Research Network for Climate Adaptation

Gustafson, D., Hayes, M., Janssen, E., Lobell, D. B., Long, S. P., Nelson, G. C., Pakrasi, H. B., Raven, P., Robertson, G. P., Robertson, R. & Wuebbles, D. J., Dec 30 2015, In : BioScience. 66, 1, p. 80-85 6 p.

Research output: Contribution to journalArticle

Midwestern United States
Climate
climate
Metagenomics
environmental economics

Photosynthetic energy conversion efficiency: Setting a baseline for gauging future improvements in important food and biofuel crops

Slattery, R. A. & Ort, D. R., Jan 1 2015, In : Plant physiology. 168, 2, p. 383-392 10 p.

Research output: Contribution to journalArticle

energy conversion
Biofuels
energy crops
food crops
Radiation

Photosynthetic terpene hydrocarbon production for fuels and chemicals

Wang, X., Ort, D. R. & Yuan, J. S., Feb 1 2015, In : Plant Biotechnology Journal. 13, 2, p. 137-146 10 p.

Research output: Contribution to journalReview article

fuel production
Terpenes
Hydrocarbons
terpenoids
hydrocarbons

Progress towards establishing collection standards for semi-automated pollen classification in forensic geo-historical location applications

Riley, K. C., Woodard, J. P., Hwang, G. M. & Punyasena, S. W., Oct 1 2015, In : Review of Palaeobotany and Palynology. 221, p. 117-127 11 p.

Research output: Contribution to journalArticle

pollen
fossils
metadata
artificial intelligence
computer vision

Redesigning photosynthesis to sustainably meet global food and bioenergy demand

Ort, D. R., Merchant, S. S., Alric, J., Barkan, A., Blankenship, R. E., Bock, R., Croce, R., Hanson, M. R., Hibberd, J. M., Long, S. P., Moore, T. A., Moroney, J., Niyogi, K. K., Parry, M. A. J., Peralta-Yahya, P. P., Prince, R. C., Redding, K. E., Spalding, M. H., Van Wijk, K. J., Vermaas, W. F. J. & 5 others, Von Caemmerer, S., Weber, A. P. M., Yeates, T. O., Yuan, J. S. & Zhu, X. G., Jul 14 2015, In : Proceedings of the National Academy of Sciences of the United States of America. 112, 28, p. 8529-8536 8 p.

Research output: Contribution to journalReview article

Photosynthesis
Synthetic Biology
Food
Biofuels
Population Growth

Road Worrier

Berenbaum, M. R., Mar 1 2015, In : American Entomologist. 61, 1, p. 5-8 4 p.

Research output: Contribution to journalArticle

roads
road

Short-termfertilizer application alters phenotypic traits of symbiotic nitrogen fixing bacteria

Simonsen, A. K., Han, S., Rekret, P., Rentschler, C. S., Heath, K. D. & Stinchcombe, J. R., Jan 1 2015, In : PeerJ. 2015, 10, e1291.

Research output: Contribution to journalArticle

nitrogen-fixing bacteria
Fertilizers
Rhizobium
Bacteria
Nitrogen

Sisal/agave

Davis, S. C. & Long, S. P., Jan 1 2015, Industrial Crops: Breeding for Bioenergy and Bioproducts. Springer New York, p. 335-349 15 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Agave
sisal
feedstocks
Biofuels
biofuels

Spatiotemporal patterns of tundra fires: Late-Quaternary charcoal records from Alaska

Chipman, M. L., Hudspith, V., Higuera, P. E., Duffy, P. A., Kelly, R., Oswald, W. W. & Hu, F. S., Jul 3 2015, In : Biogeosciences. 12, 13, p. 4017-4027 11 p.

Research output: Contribution to journalArticle

tundra
charcoal
lakes
ecosystems
ecosystem

Structure of a eukaryotic SWEET transporter in a homotrimeric complex

Tao, Y., Cheung, L. S., Li, S., Eom, J. S., Chen, L., Xu, Y., Perry, K., Frommer, W. B. & Feng, L., Nov 12 2015, In : Nature. 527, 7577, p. 259-263 5 p.

Research output: Contribution to journalArticle

Protein Subunits
Arabidopsis
Cell Membrane
Pythium
Plant Nectar

SWEETs, transporters for intracellular and intercellular sugar translocation

Eom, J. S., Chen, L., Sosso, D., Julius, B. T., Lin, I. W., Qu, X. Q., Braun, D. M. & Frommer, W. B., Jun 1 2015, In : Current opinion in plant biology. 25, p. 53-62 10 p.

Research output: Contribution to journalReview article

transporters
sugars
sucrose
hexoses
monosaccharides

Task-related differential expression of four cytochrome P450 genes in honeybee appendages

Mao, W., Schuler, M. A. & Berenbaum, M. R., Oct 1 2015, In : Insect Molecular Biology. 24, 5, p. 582-588 7 p.

Research output: Contribution to journalArticle

appendages
cytochrome P-450
Cytochrome P-450 Enzyme System
honey bees
Leg

Terrestrial ecosystems in a changing environment: A dominant role for water

Bernacchi, C. & Vanloocke, A., Apr 29 2015, In : Annual Review of Plant Biology. 66, p. 599-622 24 p.

Research output: Contribution to journalArticle

Ecosystem
Water Cycle
Water
transpiration
ecosystems

The butterfly plant arms-race escalated by gene and genome duplications

Edger, P. P., Heidel-Fischer, H. M., Bekaert, M., Rota, J., Glöckner, G., Platts, A. E., Heckel, D. G., Der, J. P., Wafula, E. K., Tang, M., Hofberger, J. A., Smithson, A., Hall, J. C., Blanchette, M., Bureau, T. E., Wright, S. I., DePamphilis, C. W., Schranz, M. E., Barker, M. S., Conant, G. C. & 5 others, Wahlberg, N., Vogel, H., Pires, J. C., Wheat, C. W. & Berenbaum, M. R., Jul 7 2015, In : Proceedings of the National Academy of Sciences of the United States of America. 112, 27, p. 8362-8366 5 p.

Research output: Contribution to journalArticle

Butterflies
Gene Duplication
Genome
Biodiversity

The influence of photosynthetic acclimation to rising CO2 and warmer temperatures on leaf and canopy photosynthesis models

Bagley, J., Rosenthal, D. M., Ruiz-Vera, U. M., Siebers, M. H., Kumar, P., Ort, D. R. & Bernacchi, C., Feb 2015, In : Global Biogeochemical Cycles. 29, 2, p. 194-206 13 p.

Research output: Contribution to journalArticle

Photosynthesis
acclimation
photosynthesis
canopy
temperature

The pineapple genome and the evolution of CAM photosynthesis

Ming, R. R., VanBuren, R., Wai, C. M., Tang, H., Schatz, M. C., Bowers, J. E., Lyons, E., Wang, M. L., Chen, J., Biggers, E., Zhang, J., Huang, L., Zhang, L., Miao, W., Zhang, J., Ye, Z., Miao, C., Lin, Z., Wang, H., Zhou, H. & 50 others, Yim, W. C., Priest, H. D., Zheng, C., Woodhouse, M., Edger, P. P., Guyot, R., Guo, H. B., Guo, H., Zheng, G., Singh, R., Sharma, A., Min, X., Zheng, Y., Lee, H., Gurtowski, J., Sedlazeck, F. J., Harkess, A., McKain, M. R., Liao, Z., Fang, J., Liu, J., Zhang, X., Zhang, Q., Hu, W., Qin, Y., Wang, K., Chen, L. Y., Shirley, N., Lin, Y. R., Liu, L. Y., Hernandez, A. G., Wright, C. L., Bulone, V., Tuskan, G. A., Heath, K. D., Zee, F., Moore, P. H., Sunkar, R., Leebens-Mack, J. H., Mockler, T., Bennetzen, J. L., Freeling, M., Sankoff, D., Paterson, A. H., Zhu, X., Yang, X., Smith, J. A. C., Cushman, J. C., Paull, R. E. & Yu, Q., Dec 1 2015, In : Nature Genetics. 47, 12, p. 1435-1442 8 p.

Research output: Contribution to journalArticle

Ananas
Photosynthesis
Genome
Acids
Circadian Clocks
Crassulacean acid metabolism
agriculture
Acids
cells
economic sustainability

Tripartite mutualism: facilitation or trade-offs between rhizobial and mycorrhizal symbionts of legume hosts

Ossler, J. N., Zielinski, C. A. & Heath, K. D., Aug 1 2015, In : American journal of botany. 102, 8, p. 1332-1341 10 p.

Research output: Contribution to journalArticle

Symbiosis
mutualism
facilitation
Rhizobium
symbiont

Ultra oil-producing

Huang, H., Long, S. P. & Singh, V., May 1 2015, International News on Fats, Oils and Related Materials, 26, 5, p. 278-282 5 p.

Research output: Contribution to specialist publicationArticle

Oils
oils

Variability in potential to exploit different soil organic phosphorus compounds among tropical montane tree species

Steidinger, B. S., Turner, B. L., Corrales, A. & Dalling, J. W., Jan 1 2015, In : Functional Ecology. 29, 1, p. 121-130 10 p.

Research output: Contribution to journalArticle

organic phosphorus
organophosphorus compounds
soil
Proteaceae
phytic acid

Variation in canopy litterfall along a precipitation and soil fertility gradient in a panamanian lower montane forest

Heineman, K. D., Caballero, P., Morris, A., Velasquez, C., Serrano, K., Ramos, N., Gonzalez, J., Mayorga, L., Corre, M. D. & Dalling, J. W., May 1 2015, In : Biotropica. 47, 3, p. 300-309 10 p.

Research output: Contribution to journalArticle

litterfall
montane forest
montane forests
soil fertility
canopy

Who'll stomp the rain?

Berenbaum, M. R., Jan 1 2015, In : American Entomologist. 61, 3, p. 133-135 3 p.

Research output: Contribution to journalComment/debate

rain

Xenobiotic detoxification pathways in honey bees

Berenbaum, M. R. & Johnson, R. M., May 16 2015, In : Current Opinion in Insect Science. 10, p. 51-58 8 p.

Research output: Contribution to journalReview article

honey
xenobiotics
detoxification
bee
honey bees

XX-rated entomologists in the Movies

Berenbaum, M. R., Dec 1 2015, In : American Entomologist. 61, 4, p. 204-206 3 p.

Research output: Contribution to journalArticle

entomologists
2014

A bacterial tyrosine phosphatase inhibits plant pattern recognition receptor activation

Macho, A. P., Schwessinger, B., Ntoukakis, V., Brutus, A., Segonzac, C., Roy, S., Kadota, Y., Oh, M. H., Sklenar, J., Derbyshire, P., Lozano-Durań, R., Malinovsky, F. G., Monaghan, J., Menke, F. L., Huber, S. C., He, S. Y. & Zipfel, C., Jan 1 2014, In : Science. 343, 6178, p. 1509-1512 4 p.

Research output: Contribution to journalArticle

Pattern Recognition Receptors
Phosphoric Monoester Hydrolases
Tyrosine
Phosphorylation
Pseudomonas syringae

Accumulation of interspersed and sex-specific repeats in the non-recombining region of papaya sex chromosomes

Na, J. K., Wang, J. & Ming, R. R., May 4 2014, In : BMC genomics. 15, 1, 335.

Research output: Contribution to journalArticle

Carica
Sex Chromosomes
Nucleic Acid Repetitive Sequences
Retroelements
X Chromosome

Accuracy and consistency of grass pollen identification by human analysts using electron micrographs of surface ornamentation

Mander, L., Baker, S. J., Belcher, C. M., Haselhorst, D. S., Rodriguez, J., Thorn, J. L., Tiwari, S., Urrego, D. H., Wesseln, C. J. & Punyasena, S. W., Aug 2014, In : Applications in Plant Sciences. 2, 8, 1400031.

Research output: Contribution to journalArticle

ornamentation
cations
pollen
cation
electrons

A footprint of past climate change on the diversity and population structure of Miscanthus sinensis

Clark, L. V., Brummer, J. E., Głowacka, K., Hall, M. C., Heo, K., Peng, J., Yamada, T., Yoo, J. H., Yu, C. Y., Zhao, H., Long, S. P. & Sacks, E. J., Jul 2014, In : Annals of Botany. 114, 1, p. 97-107 11 p.

Research output: Contribution to journalArticle

Miscanthus sinensis
carbon footprint
population structure
Miscanthus
China

A mean field model for competition: From neutral ecology to the Red Queen

O'Dwyer, J. P. & Chisholm, R., Aug 2014, In : Ecology Letters. 17, 8, p. 961-969 9 p.

Research output: Contribution to journalArticle

ecology
biodiversity
red queen hypothesis
space and time
population dynamics

Amplify the signal: Graduate training in broader impacts of scientific research

Heath, K. D., Bagley, E., Berkey, A. J. M., Birlenbach, D. M., Carr-Markell, M. K., Crawford, J. W., Duennes, M. A., Han, J. O., Haus, M. J., Hellert, S. M., Holmes, C. J., Mommer, B. C., Ossler, J., Peery, R., Powers, L., Scholes, D. R., Silliman, C. A., Stein, L. R. & Wesseln, C. J., Jun 2014, In : BioScience. 64, 6, p. 517-523 7 p.

Research output: Contribution to journalArticle

outreach
Organized Financing
Communication
Students
communication (human)
Viburnum prunifolium
Gelechiidae
Rhus typhina
Lepidoptera
Caprifoliaceae

A neotropical miocene pollen database employing image-based search and semantic modeling

Han, J. G., Cao, H., Barb, A., Punyasena, S. W., Jaramillo, C. & Shyu, C. R., Aug 2014, In : Applications in Plant Sciences. 2, 8, 1400030.

Research output: Contribution to journalArticle

pollen
Miocene
modeling
cations
spores

Approaches to advance scientific understanding of macrosystems ecology

Levy, O., Ball, B. A., Bond-Lamberty, B., Cheruvelil, K. S., Finley, A. O., Lottig, N. R., Punyasena, S. W., Xiao, J., Zhou, J., Buckley, L. B., Filstrup, C. T., Keitt, T. H., Kellner, J. R., Knapp, A. K., Richardson, A. D., Tcheng, D., Toomey, M., Vargas, R., Voordeckers, J. W., Wagner, T. & 1 others, Williams, J. W., Feb 1 2014, In : Frontiers in Ecology and the Environment. 12, 1, p. 15-23 9 p.

Research output: Contribution to journalArticle

ecology
standardization
researchers
experimental design
resource
Acclimatization
Soybeans
Glycine max
acclimation
carbon dioxide

Bioinformatic and biometric methods in plant morphology

Punyasena, S. W. & Smith, S. Y., Aug 2014, In : Applications in Plant Sciences. 2, 8, 1400071.

Research output: Contribution to journalArticle

bioinformatics
plant morphology
biometry
quantitative analysis
cations

Can the cyanobacterial carbon-concentrating mechanism increase photosynthesis in crop species? A theoretical analysis

McGrath, J. M. & Long, S. P., Apr 1 2014, In : Plant physiology. 164, 4, p. 2247-2261 15 p.

Research output: Contribution to journalArticle

Photosynthesis
concentrating
Ribulose-Bisphosphate Carboxylase
Carbon
ribulose-bisphosphate carboxylase

Climate influences on water and sediment properties of Genovesa Crater Lake, Galápagos

Conroy, J., Thompson, D. M., Collins, A., Overpeck, J. T., Bush, M. B. & Cole, J. E., Jan 1 2014, In : Journal of Paleolimnology. 52, 4, p. 331-347 17 p.

Research output: Contribution to journalArticle

crater lake
sediment property
climate
lakes
sediments

Climate refugia: Joint inference from fossil records, species distribution models and phylogeography

Gavin, D. G., Fitzpatrick, M. C., Gugger, P. F., Heath, K. D., Rodríguez-Sánchez, F., Dobrowski, S. Z., Hampe, A., Hu, F. S., Ashcroft, M. B., Bartlein, P. J., Blois, J. L., Carstens, B. C., Davis, E. B., de Lafontaine, G., Edwards, M. E., Fernandez, M., Henne, P. D., Herring, E. M., Holden, Z. A., Kong, W. S. & 8 others, Liu, J., Magri, D., Matzke, N. J., Mcglone, M. S., Saltré, F., Stigall, A. L., Tsai, Y. H. E. & Williams, J. W., Oct 2014, In : New Phytologist. 204, 1, p. 37-54 18 p.

Research output: Contribution to journalReview article

Phylogeography
phylogeography
refuge habitats
Climate
biogeography

Cloning major genes controlling fruit flesh color in papaya

Aryal, R. & Ming, R. R., Jan 1 2014, Genetics and Genomics of Papaya. Springer New York, p. 341-353 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Carica
papayas
major genes
Organism Cloning
molecular cloning

Connecting functional and statistical definitions of genotype by genotype interactions in coevolutionary studies

Heath, K. D. & Nuismer, S. L., Jan 1 2014, In : Frontiers in Genetics. 5, APR, Article 77.

Research output: Contribution to journalArticle

Genotype
Cross Infection
Population
Genetic Selection
Infection

Constraints on the salinity-oxygen isotope relationship in the central tropical Pacific Ocean

Conroy, J., Cobb, K. M., Lynch-Stieglitz, J. & Polissar, P. J., Apr 20 2014, In : Marine Chemistry. 161, p. 26-33 8 p.

Research output: Contribution to journalArticle

Oxygen Isotopes
Seawater
oxygen isotope
salinity
ocean

Developmental stage specificity of transcriptional, biochemical and CO2 efflux responses of leaf dark respiration to growth of Arabidopsis thaliana at elevated [CO2]

Markelz, R. J. C., Vosseller, L. N. & Leakey, A., Nov 1 2014, In : Plant Cell and Environment. 37, 11, p. 2542-2552 11 p.

Research output: Contribution to journalArticle

cell respiration
Arabidopsis
Respiration
Arabidopsis thaliana
developmental stages

Distinct transcriptional profiles of ozone stress in soybean (Glycine max) flowers and pods

Leisner, C. P., Ming, R. & Ainsworth, E. A., Jan 1 2014, In : BMC Plant Biology. 14, 1, 335.

Research output: Contribution to journalArticle

ozone
pods
Glycine max
soybeans
flowers

Elements required for an efficient NADP-malic enzyme type C4 photosynthesis

Wang, Y., Long, S. P. & Zhu, X. G., Apr 1 2014, In : Plant physiology. 164, 4, p. 2231-2246 16 p.

Research output: Contribution to journalArticle

malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+)
C4 photosynthesis
malic enzyme
Photosynthesis
NADP (coenzyme)