Research Output 1975 2019

Article

Development and application of microsatellite markers for genomic analysis of papaya

Eustice, M., Yu, Q., Lai, C. W., Hou, S., Thimmapuram, J., Liu, L., Alam, M., Moore, P. H., Presting, G. G. & Ming, R. R., Apr 1 2008, In : Tree Genetics and Genomes. 4, 2, p. 333-341 9 p.

Research output: Contribution to journalArticle

Carica
papayas
Microsatellite Repeats
genomics
polymorphism

Development of an X-specific marker and identification of YY individuals in spinach

Wadlington, W. H. & Ming, R. R., Sep 1 2018, In : Theoretical and Applied Genetics. 131, 9, p. 1987-1994 8 p.

Research output: Contribution to journalArticle

Spinacia oleracea
spinach
Sex Chromosomes
sex chromosomes
X Chromosome

Development of a Three-Dimensional Ray-Tracing Model of Sugarcane Canopy Photosynthesis and Its Application in Assessing Impacts of Varied Row Spacing

Wang, Y., Song, Q., Jaiswal, D., P. de Souza, A., Long, S. P. & Zhu, X. G., Sep 1 2017, In : Bioenergy Research. 10, 3, p. 626-634 9 p.

Research output: Contribution to journalArticle

Photosynthesis
row spacing
Ray tracing
sugarcane
planting

Development of broad-host-range vectors for expression of cloned genes in Pseudomonas

Werneke, J. M., Sligar, S. & Schuler, M. A., 1985, In : Gene. 38, 1-3, p. 73-84 12 p.

Research output: Contribution to journalArticle

Host Specificity
Pseudomonas
Gene Expression
Pseudomonas putida
Organism Cloning

Development of broad host range vectors for expression of genes in Pseudomonas

Schuler, M. A., Sligar, S. & Werneke, J. M., Jan 1 1984, In : Federation Proceedings. 43, 6

Research output: Contribution to journalArticle

Host Specificity
Pseudomonas
Gene Expression

Development of Chromosome-specific Cytogenetic Markers and Merging of Linkage Fragments in Papaya

Wai, C. M., Ming, R. R., Moore, P. H., Paull, R. E. & Yu, Q., Sep 16 2010, In : Tropical Plant Biology. 3, 3, p. 171-181 11 p.

Research output: Contribution to journalArticle

Carica
papayas
linkage groups
cytogenetics
Cytogenetics
Asteraceae
Expressed Sequence Tags
Population Genetics
Genetic Markers
Microsatellite Repeats

Development of male-specific markers and identification of sex reversal mutants in papaya

Liao, Z., Yu, Q. & Ming, R. R., Feb 1 2017, In : Euphytica. 213, 2, 53.

Research output: Contribution to journalArticle

Carica
sex reversal
papayas
mutants
gender

Development of microsatellite markers in autopolyploid sugarcane and comparative analysis of conserved microsatellites in sorghum and sugarcane

James, B. T., Chen, C., Rudolph, A., Swaminathan, K., Murray, J. E., Na, J. K., Spence, A. K., Smith, B., Hudson, M., Moose, S. P. & Ming, R. R., Aug 1 2012, In : Molecular Breeding. 30, 2, p. 661-669 9 p.

Research output: Contribution to journalArticle

autopolyploidy
Saccharum
Sorghum
Microsatellite Repeats
sugarcane

Dietary and developmental influences on induced detoxification in an oligophage

Cianfrogna, J. A., Zangerl, A. R. & Berenbaum, M. R., Jan 1 2002, In : Journal of Chemical Ecology. 28, 7, p. 1349-1364 16 p., 374129.

Research output: Contribution to journalArticle

psoralens
Detoxification
detoxification
metabolism
Metabolism

Differences in leaf phenology between juvenile and adult trees in a temperate deciduous forest

Augspurger, C. K. & Bartlett, E. A., Jun 2003, In : Tree Physiology. 23, 8, p. 517-525 9 p.

Research output: Contribution to journalArticle

temperate forests
deciduous forests
phenology
Aesculus glabra
canopy

Differences in seed germination responses may promote coexistence of four sympatric Piper species

Daws, M. I., Burslem, D. F. R. P., Crabtree, L. M., Kirkman, P., Mullins, C. E. & Dalling, J. W., May 11 2002, In : Functional Ecology. 16, 2, p. 258-267 10 p.

Research output: Contribution to journalArticle

Piper
coexistence
germination
seed germination
Piper hispidum

Differential effects of chilling-induced photooxidation on the redox regulation of photosynthetic enzymes

Hutchison, R. S., Groom, Q. & Ort, D. R., Jun 6 2000, In : Biochemistry. 39, 22, p. 6679-6688 10 p.

Research output: Contribution to journalArticle

Chilling
Photooxidation
Oxidation-Reduction
Chloroplast Thioredoxins
Chloroplasts

Differential expression and evolution of the arabidopsis CYP86A subfamily

Duan, H. & Schuler, M. A., Dec 1 2005, In : Plant physiology. 137, 3, p. 1067-1081 15 p.

Research output: Contribution to journalArticle

Mixed Function Oxygenases
Arabidopsis
fatty acids
Fatty Acids
Seedlings

Differential induction of cytochrome P450-mediated triasulfuron metabolism by naphthalic anhydride and triasulfuron

Persans, M. W. & Schuler, M. A., Dec 1995, In : Plant physiology. 109, 4, p. 1483-1490 8 p.

Research output: Contribution to journalArticle

naphthalic anhydride
triasulfuron
cytochrome P-450
Cytochrome P-450 Enzyme System
metabolism
Papilio polyxenes
psoralens
cytochrome P-450
Cytochrome P-450 Enzyme System
methoxsalen

Differential lysine acetylation profiles of Erwinia amylovora strains revealed by proteomics

Wu, X., Vellaichamy, A., Wang, D., Zamdborg, L., Kelleher, N. L., Huber, S. C. & Zhao, Y., Feb 1 2013, In : Journal of Proteomics. 79, p. 60-71 12 p.

Research output: Contribution to journalArticle

Erwinia amylovora
Acetylation
Proteomics
Lysine
Virulence

Differential methylation and expression of HUA1 ortholog in three sex types of papaya

Liu, J., Chatham, L., Aryal, R., Yu, Q. & Ming, R. R., Jul 2018, In : Plant Science. 272, p. 99-106 8 p.

Research output: Contribution to journalArticle

Carica
papayas
methylation
Methylation
gender

Differential response of nitrate reductase and sucrose‐phosphate synthase‐activation to inorganic and organic salts, in vitro and in situ

Huber, S. C., Huber, J. L. & Kaiser, W. M., Oct 1994, In : Physiologia Plantarum. 92, 2, p. 302-310 9 p.

Research output: Contribution to journalArticle

organic salts
Nitrate Reductase
inorganic salts
nitrate reductase
Salts

Differential responses in two varieties of winter wheat to elevated ozone concentration under fully open-air field conditions

Feng, Z., Pang, J., Kobayashi, K., Zhu, J. & Ort, D. R., Jan 1 2011, In : Global change biology. 17, 1, p. 580-591 12 p.

Research output: Contribution to journalArticle

Ozone
cultivar
wheat
ozone
Pigments

Differential seed germination responses to the ratio of red to far-red light in temperate and tropical species

Tiansawat, P. & Dalling, J. W., May 1 2013, In : Plant Ecology. 214, 5, p. 751-764 14 p.

Research output: Contribution to journalArticle

far-red light
germination
seed germination
seed
seeds

Differential stimulation of NAD kinase and binding of peptide substrates by wild-type and mutant plant calmodulin isoforms

Liao, B., Gawienowski, M. C. & Zielinski, R. E., Mar 1 1996, In : Archives of Biochemistry and Biophysics. 327, 1, p. 53-60 8 p.

Research output: Contribution to journalArticle

Calmodulin
Protein Isoforms
Peptides
Substrates
Arabidopsis

Dioecy does not consistently accelerate or slow lineage diversification across multiple genera of angiosperms

Sabath, N., Goldberg, E. E., Glick, L., Einhorn, M., Ashman, T. L., Ming, R. R., Otto, S. P., Vamosi, J. C. & Mayrose, I., Feb 1 2016, In : New Phytologist. 209, 3, p. 1290-1300 11 p.

Research output: Contribution to journalArticle

dioecy
Angiosperms
Angiospermae
sexual systems
extinction

Direct and indirect effects of elevated CO2 on leaf respiration in a forest ecosystem

Hamilton, J. G., Thomas, R. B. & Delucia, E. H., Sep 18 2001, In : Plant, Cell and Environment. 24, 9, p. 975-982 8 p.

Research output: Contribution to journalArticle

forest ecosystems
Ecosystem
Liquidambar
Respiration
carbon dioxide

Direction and extent of organelle DNA introgression between two spruce species in the Qinghai-Tibetan Plateau

Du, F. K., Peng, X. L., Liu, J. Q., Lascoux, M., Hu, F. S. & Petit, R. J., Dec 1 2011, In : New Phytologist. 192, 4, p. 1024-1033 10 p.

Research output: Contribution to journalArticle

Gene Flow
Organelles
introgression
organelles
Picea

Directions for research and training in plant omics: Big Questions and Big Data

Argueso, C. T., Assmann, S. M., Birnbaum, K. D., Chen, S., Dinneny, J. R., Doherty, C. J., Eveland, A. L., Friesner, J., Greenlee, V. R., Law, J. A., Marshall-Colón, A., Mason, G. A., O'Lexy, R., Peck, S. C., Schmitz, R. J., Song, L., Stern, D., Varagona, M. J., Walley, J. W. & Williams, C. M., Apr 2019, In : Plant Direct. 3, 4, e00133.

Research output: Contribution to journalArticle

Open Access
training (plants)
Education
plant biology
Research
Arabidopsis

Direct solubilization of heterologously expressed membrane proteins by incorporation into nanoscale lipid bilayers

Civjan, N. R., Bayburt, T. H., Schuler, M. A. & Sligar, S., Sep 1 2003, In : BioTechniques. 35, 3, p. 556-563 8 p.

Research output: Contribution to journalArticle

Lipid bilayers
Lipid Bilayers
Membrane Proteins
Membranes
Insects

Dispersal patterns in space and time: A case study of apiaceae subfamily apioideae

Banasiak, Ł., Piwczyński, M., Uliński, T., Downie, S. R., Watson, M. F., Shakya, B. & Spalik, K., Jul 1 2013, In : Journal of Biogeography. 40, 7, p. 1324-1335 12 p.

Research output: Contribution to journalArticle

Apiaceae
Eurasia
Neotropical Kingdom
space and time
case studies
Honey
Bees
Quercetin
Triazoles
Phytochemicals

Dissecting Arabidopsis Gβ signal transduction on the protein surface

Jiang, K., Frick-Cheng, A., Trusov, Y., Delgado-Cerezo, M., Rosenthal, D. M., Lorek, J., Panstruga, R., Booker, F. L., Botella, J. R., Molina, A., Ort, D. R. & Jones, A. M., Jul 1 2012, In : Plant physiology. 159, 3, p. 975-983 9 p.

Research output: Contribution to journalArticle

Arabidopsis
signal transduction
Signal Transduction
Membrane Proteins
Biological Phenomena

Dissecting the nonlinear response of maize yield to high temperature stress with model-data integration

Zhu, P., Zhuang, Q., Archontoulis, S. V., Bernacchi, C. & Müller, C., Jul 2019, In : Global change biology. 25, 7, p. 2470-2484 15 p.

Research output: Contribution to journalArticle

Data integration
maize
Crops
crop
Temperature

Distinct Substrate Transport Mechanism Identified in Homologous Sugar Transporters

Cheng, K. J., Selvam, B., Chen, L. & Shukla, D., Oct 10 2019, In : Journal of Physical Chemistry B. 123, 40, p. 8411-8418 8 p.

Research output: Contribution to journalArticle

transporter
sugars
Sugars
glucose
Glucose

Distinct transcriptional profiles of ozone stress in soybean (Glycine max) flowers and pods

Leisner, C. P., Ming, R. & Ainsworth, E. A., Jan 1 2014, In : BMC Plant Biology. 14, 1, 335.

Research output: Contribution to journalArticle

ozone
pods
Glycine max
soybeans
flowers

Diurnal changes in sucrose phosphate synthase activity in leaves

Huber, S. C., Kerr, P. S. & Rufty, T. W., May 1985, In : Physiologia Plantarum. 64, 1, p. 81-87 7 p.

Research output: Contribution to journalArticle

sucrose-phosphate synthase
Soybeans
Photoperiod
soybeans
Zea mays

Diurnal cycling transcription factors of pineapple revealed by genome-wide annotation and global transcriptomic analysis

Sharma, A., Wai, C. M., Ming, R. & Yu, Q., Sep 1 2017, In : Genome biology and evolution. 9, 9, p. 2170-2190 21 p.

Research output: Contribution to journalArticle

Ananas
pineapples
transcriptomics
Transcription Factors
transcription factors
aquaporins
water management
soybean
fluid mechanics
soybeans

Diurnal regulation of photosynthesis in understory saplings

Singsaas, E. L., Ort, D. R. & DeLucia, E. H., Jan 1 2000, In : New Phytologist. 145, 1, p. 39-49 11 p.

Research output: Contribution to journalArticle

Photosynthesis
saplings
understory
photosynthesis
carbon dioxide

Divalent cations and polyamines bind to loop 8 of 14-3-3 proteins, modulating their interaction with phosphorylated nitrate reductase

Athwal, G. S. & Huber, S. C., Feb 20 2002, In : Plant Journal. 29, 2, p. 119-129 11 p.

Research output: Contribution to journalArticle

14-3-3 Proteins
Nitrate Reductase
Divalent Cations
Polyamines
nitrate reductase

Diversification and independent domestication of Asian and European pears

Wu, J., Wang, Y., Xu, J., Korban, S. S., Fei, Z., Tao, S., Ming, R., Tai, S., Khan, A. M., Postman, J. D., Gu, C., Yin, H., Zheng, D., Qi, K., Li, Y., Wang, R., Deng, C. H., Kumar, S., Chagné, D., Li, X. & 19 others, Wu, J., Huang, X., Zhang, H., Xie, Z., Li, X., Zhang, M., Li, Y., Yue, Z., Fang, X., Li, J., Li, L., Jin, C., Qin, M., Zhang, J., Wu, X., Ke, Y., Wang, J., Yang, H. & Zhang, S., Jun 11 2018, In : Genome biology. 19, 1, 77.

Research output: Contribution to journalArticle

Pyrus
domestication
pears
genome
fruit
Substrate Specificity
Mixed Function Oxygenases
Cytochrome P-450 Enzyme System
Proteins
Herbivory

Diversities and similarities in P450 systems: An introduction

Schuler, M. A. & Sligar, S., Dec 1 2007, In : Metal Ions in Life Sciences. 3, p. 1-26 26 p.

Research output: Contribution to journalArticle

Mixed Function Oxygenases
Metabolism
Detoxification
Mammals
Poisons

Diversity, host affinity, and distribution of seed-infecting fungi: A case study with Cecropia

Gallery, R. E., Dalling, J. W. & Arnold, A. E., Mar 1 2007, In : Ecology. 88, 3, p. 582-588 7 p.

Research output: Contribution to journalArticle

Cecropia
fungus
case studies
seed
fungi

Diversity and evolutionary origins of fungi associated with seeds of a neotropical pioneer tree: a case study for analysing fungal environmental samples

U'Ren, J. M., Dalling, J. W., Gallery, R. E., Maddison, D. R., Davis, E. C., Gibson, C. M. & Arnold, A. E., Apr 1 2009, In : Mycological Research. 113, 4, p. 432-449 18 p.

Research output: Contribution to journalArticle

pioneer species
Seeds
Fungi
fungus
case studies

Diversity in stomatal function is integral to modelling plant carbon and water fluxes

Wolz, K. J., Wertin, T. M., Abordo, M., Wang, D. & Leakey, A., Sep 1 2017, In : Nature Ecology and Evolution. 1, 9, p. 1292-1298 7 p.

Research output: Contribution to journalArticle

carbon
modeling
water
agricultural application
crop models

DNA methylation and heterochromatinization in the male-specific region of the primitive Y chromosome of papaya

Zhang, W., Wang, X., Yu, Q., Ming, R. R. & Jiang, J., Dec 1 2008, In : Genome Research. 18, 12, p. 1938-1943 6 p.

Research output: Contribution to journalArticle

Carica
Y Chromosome
DNA Methylation
Sex Chromosomes
X Chromosome

Does elevated atmospheric [CO 2 ] alter diurnal C uptake and the balance of C and N metabolites in growing and fully expanded soybean leaves?

Ainsworth, E., Rogers, A., Leakey, A., Heady, L. E., Gibon, Y., Stitt, M. & Schurr, U., Feb 1 2007, In : Journal of experimental botany. 58, 3, p. 579-591 13 p.

Research output: Contribution to journalArticle

Carbon Monoxide
Soybeans
soybeans
metabolites
uptake mechanisms

Does free-air carbon dioxide enrichment affect photochemical energy use by evergreen trees in different seasons? A chlorophyll fluorescence study of mature loblolly pine

Hymus, G. J., Ellsworth, D. S., Baker, N. R. & Long, S. P., Aug 1 1999, In : Plant physiology. 120, 4, p. 1183-1191 9 p.

Research output: Contribution to journalArticle

Pinus taeda
free air carbon dioxide enrichment
Chlorophyll
Electron Transport
Carbon Dioxide

Does greater leaf-level photosynthesis explain the larger solar energy conversion efficiency of Miscanthus relative to switchgrass?

Dohleman, F. G., Heaton, E. A., Leakey, A. D. B. & Long, S. P., Nov 1 2009, In : Plant, Cell and Environment. 32, 11, p. 1525-1537 13 p.

Research output: Contribution to journalArticle

Solar Energy
Panicum
Miscanthus
energy conversion
solar energy

Does photosynthetic acclimation to elevated CO2 increase photosynthetic nitrogen-use efficiency? A study of three native UK grassland species in open-top chambers

Davey, P. A., Parsons, A. J., Atkinson, L., Wadge, K. & Long, S. P., Jun 1 1999, In : Functional Ecology. 13, SUPPL. 1, p. 21-28 8 p.

Research output: Contribution to journalArticle

open-top chamber
nutrient use efficiency
acclimation
grasslands
grassland

Domestic Affairs

Berenbaum, M., Sep 18 2019, In : American Entomologist. 65, 3, p. 154-157

Research output: Contribution to journalArticle