Research Output 1975 2020

2016

Nitrogen deposition and greenhouse gas emissions from grasslands: Uncertainties and future directions

Gomez-Casanovas, N., Hudiburg, T. W., Bernacchi, C., Parton, W. J. & Delucia, E. H., Apr 1 2016, In : Global Change Biology. 22, 4, p. 1348-1360 13 p.

Research output: Contribution to journalArticle

Gas emissions
Greenhouse gases
greenhouse gas
Nitrogen
grassland
Photosynthesis
reproductive cycle
Starvation
Ribulose-Bisphosphate Carboxylase
plant breeding

Paired stable isotopologues in precipitation and vapor: A case study of the amount effect within western tropical Pacific storms

Conroy, J. L., Noone, D., Cobb, K. M., Moerman, J. W. & Konecky, B. L., Jan 1 2016, In : Journal of Geophysical Research. 121, 7, p. 3290-3303 14 p.

Research output: Contribution to journalArticle

Precipitation (meteorology)
vapors
Isotopes
isotopes
Vapors

Palaeodata-informed modelling of large carbon losses from recent burning of boreal forests

Kelly, R., Genet, H., McGuire, A. D. & Hu, F. S., Jan 1 2016, In : Nature Climate Change. 6, 1, p. 79-82 4 p.

Research output: Contribution to journalArticle

boreal forest
carbon
modeling
climate
regime

Pastinaca erzincanensis (Apiaceae), A New Species from Eastern Turkey and Its Phylogenetic Position within Tordylieae

Menemen, Y., Kandemir, A. & Downie, S. R., Nov 2016, In : Annales Botanici Fennici. 53, 5-6, p. 373-382 10 p.

Research output: Contribution to journalArticle

Pastinaca
Apiaceae
Turkey (country)
fruit
new species

Phylogenetic evidence for a fusion of archaeal and bacterial SemiSWEETs to form eukaryotic SWEETs and identification of SWEET hexose transporters in the amphibian chytrid pathogen Batrachochytrium dendrobatidis

Hu, Y. B., Sosso, D., Qu, X. Q., Chen, L. Q., Ma, L., Chermak, D., Zhang, D. C. & Frommer, W. B., Oct 2016, In : FASEB Journal. 30, 10, p. 3644-3654 11 p.

Research output: Contribution to journalArticle

Chytridiomycota
Monosaccharide Transport Proteins
Amphibians
Pathogens
Fungi

Phylogenetic turnover along local environmental gradients in tropical forest communities

Baldeck, C. A., Kembel, S. W., Harms, K. E., Yavitt, J. B., John, R., Turner, B. L., Madawala, S., Gunatilleke, N., Gunatilleke, S., Bunyavejchewin, S., Kiratiprayoon, S., Yaacob, A., Supardi, M. N. N., Valencia, R., Navarrete, H., Davies, S. J., Chuyong, G. B., Kenfack, D., Thomas, D. W. & Dalling, J. W., Oct 1 2016, In : Oecologia. 182, 2, p. 547-557 11 p.

Research output: Contribution to journalArticle

forest communities
environmental gradient
tropical forests
tropical forest
turnover

Physiological evidence for plasticity in glycolate/glycerate transport during photorespiration

Walker, B. J., South, P. F. & Ort, D. R., Jul 1 2016, In : Photosynthesis research. 129, 1, p. 93-103 11 p.

Research output: Contribution to journalArticle

glycolic acid
Ribulose-Bisphosphate Carboxylase
photorespiration
ribulose-bisphosphate carboxylase
Plasticity

Pineapple Genome: A Reference for Monocots and CAM Photosynthesis

Ming, R. R., Wai, C. M. & Guyot, R., Nov 1 2016, In : Trends in Genetics. 32, 11, p. 690-696 7 p.

Research output: Contribution to journalShort survey

Ananas
Bromeliaceae
Photosynthesis
Genome
Acids

Plants in silico: Why, why now and what?-an integrative platform for plant systems biology research

Zhu, X. G., Lynch, J. P., Lebauer, D. S., Millar, A. J., Stitt, M. & Long, S. P., May 1 2016, In : Plant Cell and Environment. 39, 5, p. 1049-1057 9 p.

Research output: Contribution to journalReview article

Systems Biology
Computer Simulation
Biological Sciences
Research
Ecosystem

Productivity of North American grasslands is increased under future climate scenarios despite rising aridity

Hufkens, K., Keenan, T. F., Flanagan, L. B., Scott, R. L., Bernacchi, C. J., Joo, E., Brunsell, N. A., Verfaillie, J. & Richardson, A. D., Jul 1 2016, In : Nature Climate Change. 6, 7, p. 710-714 5 p.

Research output: Contribution to journalArticle

aridity
productivity
grassland
climate
scenario

Reproducing static and dynamic biodiversity patterns in tropical forests: The critical role of environmental variance

Fung, T., O'Dwyer, J. P., Rahman, K. A. B. D., Fletcher, C. D. & Chisholm, R. A., May 1 2016, In : Ecology. 97, 5, p. 1207-1217 11 p.

Research output: Contribution to journalArticle

tropical forests
tropical forest
biodiversity
demographic statistics
biogeography

Rhizobia: tractable models for bacterial evolutionary ecology

Heath, K. D. & Grillo, M. A., Dec 1 2016, In : Environmental Microbiology. 18, 12, p. 4307-4311 5 p.

Research output: Contribution to journalArticle

Rhizobium
rhizobacterium
Ecology
ecology

Seedling growth responses to phosphorus reflect adult distribution patterns of tropical trees

Zalamea, P. C., Turner, B. L., Winter, K., Jones, F. A., Sarmiento, C. & Dalling, J. W., Oct 1 2016, In : The New phytologist. 212, 2, p. 400-408 9 p.

Research output: Contribution to journalArticle

Seedlings
Phosphorus
seedling growth
phosphorus
Growth

Soil nutrient removal by four potential bioenergy crops: Zea mays, Panicum virgatum, Miscanthus×giganteus, and prairie

Masters, M. D., Black, C. K., Kantola, I. B., Woli, K. P., Voigt, T., David, M. B. & DeLucia, E. H., Jan 15 2016, In : Agriculture, Ecosystems and Environment. 216, p. 51-60 10 p.

Research output: Contribution to journalArticle

Panicum virgatum
energy crops
bioenergy
soil nutrient
prairies

Spatially Aware Dictionary Learning and Coding for Fossil Pollen Identification

Kong, S., Punyasena, S. W. & Fowlkes, C., Dec 16 2016, Proceedings - 29th IEEE Conference on Computer Vision and Pattern Recognition Workshops, CVPRW 2016. IEEE Computer Society, p. 1305-1314 10 p. 7789655. (IEEE Computer Society Conference on Computer Vision and Pattern Recognition Workshops).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Glossaries
Microscopic examination
Textures
Testing

Speaking of insects⋯

Berenbaum, M. R., Sep 23 2016, In : Science. 353, 6306, 1 p.

Research output: Contribution to journalEditorial

Biological Pest Control
Entomology
Dengue
Aedes
Insects

Structure, phylogeny, allelic haplotypes and expression of sucrose transporter gene families in Saccharum

Zhang, Q., Hu, W., Zhu, F., Wang, L., Yu, Q., Ming, R. & Zhang, J., Feb 1 2016, In : BMC genomics. 17, 1, 88.

Research output: Contribution to journalArticle

Saccharum
Phylogeny
Haplotypes
Sucrose
Genes

Techno-economic analysis of biodiesel and ethanol co-production from lipid-producing sugarcane

Huang, H., Long, S. & Singh, V., May 1 2016, In : Biofuels, Bioproducts and Biorefining. 10, 3, p. 299-315 17 p.

Research output: Contribution to journalArticle

Biofuels
Economic analysis
Biodiesel
Lipids
Ethanol

Technoeconomic Analysis of Biodiesel and Ethanol Production from Lipid-Producing Sugarcane and Sweet Sorghum

Huang, H., Long, S. P., Clemente, T. E. & Singh, V., Dec 2016, In : Industrial Biotechnology. 12, 6, p. 357-365 9 p.

Research output: Contribution to journalArticle

Saccharum
Sorghum
Biofuels
Ethanol
Lipids

The Costs of Photorespiration to Food Production Now and in the Future

Walker, B. J., Vanloocke, A., Bernacchi, C. J. & Ort, D. R., Apr 29 2016, In : Annual Review of Plant Biology. 67, p. 107-129 23 p.

Research output: Contribution to journalReview article

photorespiration
food production
Carbon Dioxide
Costs and Cost Analysis
Food
Breeding
breeding
Forests
intraspecific variation

The influence of drought and heat stress on long-term carbon fluxes of bioenergy crops grown in the Midwestern USA

Joo, E., Hussain, M. Z., Zeri, M., Masters, M. D., Miller, J. N., Gomez-Casanovas, N., DeLucia, E. H. & Bernacchi, C. J., Sep 1 2016, In : Plant Cell and Environment. 39, 9, p. 1928-1940 13 p.

Research output: Contribution to journalArticle

Carbon Cycle
Droughts
energy crops
Miscanthus
Ecosystem

The plastid casein kinase 2 phosphorylates rubisco activase at the Thr-78 site but is not essential for regulation of rubisco activation state

Kim, S. Y., Bender, K. W., Walker, B. J., Zielinski, R. E., Spalding, M. H., Ort, D. R. & Huber, S. C., Mar 31 2016, In : Frontiers in Plant Science. 7, MAR2016, 404.

Research output: Contribution to journalArticle

ribulose-bisphosphate carboxylase
threonine
plastids
phosphorylation
knockout mutants

The role of the Southern Hemisphere in the evolutionary history of Apiaceae, a mostly north temperate plant family

Calviño, C. I., Teruel, F. E. & Downie, S. R., Feb 1 2016, In : Journal of Biogeography. 43, 2, p. 398-409 12 p.

Research output: Contribution to journalArticle

Apiaceae
Southern Hemisphere
Australasian region
Eurasia
history

Transcriptome profiling revealed stress-induced and disease resistance genes up-regulated in PRSV resistant transgenic papaya

Fang, J., Lin, A., Qiu, W., Cai, H., Umar, M., Chen, R. & Ming, R., Jun 16 2016, In : Frontiers in Plant Science. 7, JUNE2016, 855.

Research output: Contribution to journalArticle

Papaya ringspot virus
induced resistance
papayas
transcriptomics
disease resistance

Two tropical conifers show strong growth and water-use efficiency responses to altered CO2 concentration

Dalling, J. W., Cernusak, L. A., Winter, K., Aranda, J., Garcia, M., Virgo, A., Cheesman, A. W., Baresch, A., Jaramillo, C. & Turner, B. L., Nov 1 2016, In : Annals of botany. 118, 6, p. 1113-1125 13 p.

Research output: Contribution to journalArticle

conifers
water use efficiency
Podocarpus
Angiospermae
nitrates

Urbana house ants 2.0: Revisiting M. R. Smith's 1926 survey of house-infesting ants in central Illinois after 87 years

Belcher, A. K., Berenbaum, M. R. & Suarez, A., Jan 1 2016, In : American Entomologist. 62, 3, p. 182-193 12 p.

Research output: Contribution to journalArticle

ant
Formicidae
Tapinoma sessile
Camponotus pennsylvanicus
urban site

Variation in ectomycorrhizal fungal communities associated with Oreomunnea mexicana (Juglandaceae) in a Neotropical montane forest

Corrales, A., Arnold, A. E., Ferrer, A., Turner, B. L. & Dalling, J. W., Jan 1 2016, In : Mycorrhiza. 26, 1, p. 1-17 17 p.

Research output: Contribution to journalArticle

Juglandaceae
fungal communities
montane forest
montane forests
tropical forests

Variation in wood nutrients along a tropical soil fertility gradient

Heineman, K. D., Turner, B. L. & Dalling, J. W., Jul 1 2016, In : The New phytologist. 211, 2, p. 440-454 15 p.

Research output: Contribution to journalArticle

tropical soils
Fertility
soil fertility
Soil
Food

Visual recognition software for binary classification and its application to spruce pollen identification

Tcheng, D. K., Nayak, A. K., Fowlkes, C. C. & Punyasena, S. W., Feb 2016, In : PloS one. 11, 2, e0148879.

Research output: Contribution to journalArticle

Pollen
Learning systems
Picea
Software
Picea glauca
2015

A 400-year isotopic record of seabird response to eastern tropical Pacific productivity

Conroy, J., Collins, A. F., Overpeck, J. T., Bush, M. B., Cole, J. E. & Anderson, D. J., Jul 1 2015, In : Geo: Geography and Environment. 2, 2, p. 137-147 11 p.

Research output: Contribution to journalArticle

seabird
productivity
guano
crater lake
increase in productivity

AAAS annual election: Preliminary announcement

Anderson, J. L., Hockfield, S., Beall, C. M., Berenbaum, M. R., Miranda, M. L., Stuss, D. T., Borchelt, R. E., Clark, A. M., Dunwoody, S., Francisco, J. S., Graham, S. L., Harthorn, B. H., Press, W. H. & Raven, P. H., Sep 25 2015, In : Science. 349, 6255, 1 p.

Research output: Contribution to journalComment/debate

Pisum sativum subsp. sativum var. sativum
Ozone
Peas
transcriptomics
ozone
Apiales
Plastid Genomes
transfer DNA
Plastids
plastid DNA

A dietary phytochemical alters caste-associated gene expression in honey bees

Mao, W., Schuler, M. A. & Berenbaum, M. R., Aug 2015, In : Science Advances. 1, 7, e1500795.

Research output: Contribution to journalArticle

Honey
Bees
Phytochemicals
Social Class
Larva

A late-Quaternary perspective on atmospheric pCO2, climate, and fire as drivers of C4-grass abundance

Urban, M. A., Nelson, D. M., Street-Perrott, F. A., Verschuren, D. & Hu, F. S., Mar 1 2015, In : Ecology. 96, 3, p. 642-653 12 p.

Research output: Contribution to journalArticle

grass
grasses
climate
lowlands
moisture

ALLMAPS: Robust scaffold ordering based on multiple maps

Tang, H., Zhang, X., Miao, C., Zhang, J., Ming, R., Schnable, J. C., Schnable, P. S., Lyons, E. & Lu, J., Jan 13 2015, In : Genome biology. 16, 1, 3.

Research output: Contribution to journalArticle

genome assembly
Genome
genome
Chromosomes
chromosomes

An analysis of ozone damage to historical maize and soybean yields in the United States

McGrath, J. M., Betzelberger, A. M., Wang, S., Shook, E., Zhu, X. G., Long, S. P. & Ainsworth, E. A., Nov 17 2015, In : Proceedings of the National Academy of Sciences of the United States of America. 112, 46, p. 14390-14395 6 p.

Research output: Contribution to journalArticle

Ozone
Soybeans
Zea mays
Rain
Food Supply

An autophosphorylation site database for leucine-rich repeat receptor-like kinases in Arabidopsis thaliana

Mitra, S. K., Chen, R., Dhandaydham, M., Wang, X., Blackburn, R. K., Kota, U., Goshe, M. B., Schwartz, D., Huber, S. C. & Clouse, S. D., Jun 1 2015, In : Plant Journal. 82, 6, p. 1042-1060 19 p.

Research output: Contribution to journalArticle

protein phosphorylation
Arabidopsis
Leucine
leucine
phosphotransferases (kinases)
Salix
Climate
climate
Temperature
Photosynthesis

Application of optical topometry to analysis of the plant epidermis

Haus, M. J., Kelsch, R. D. & Jacobs, T. W., Sep 2015, In : Plant physiology. 169, 2, p. 946-959 14 p.

Research output: Contribution to journalArticle

Plant Epidermis
epidermis (plant)
herbaria
Arabidopsis
metrology

Arctic tundra fires: Natural variability and responses to climate change

Hu, F. S., Higuera, P. E., Duffy, P., Chipman, M. L., Rocha, A. V., Young, A. M., Kelly, R. & Dietze, M. C., Sep 1 2015, In : Frontiers in Ecology and the Environment. 13, 7, p. 369-377 9 p.

Research output: Contribution to journalReview article

tundra
climate change
fire regime
climate
socioeconomic impact

A roadmap for research on crassulacean acid metabolism (CAM) to enhance sustainable food and bioenergy production in a hotter, drier world

Yang, X., Cushman, J. C., Borland, A. M., Edwards, E. J., Wullschleger, S. D., Tuskan, G. A., Owen, N. A., Griffiths, H., Smith, J. A. C., De Paoli, H. C., Weston, D. J., Cottingham, R., Hartwell, J., Davis, S. C., Silvera, K., Ming, R., Schlauch, K., Abraham, P., Stewart, J. R., Guo, H. B. & 31 others, Albion, R., Ha, J., Lim, S. D., Wone, B. W. M., Yim, W. C., Garcia, T., Mayer, J. A., Petereit, J., Nair, S. S., Casey, E., Hettich, R. L., Ceusters, J., Ranjan, P., Palla, K. J., Yin, H., Reyes-García, C., Andrade, J. L., Freschi, L., Beltrán, J. D., Dever, L. V., Boxall, S. F., Waller, J., Davies, J., Bupphada, P., Kadu, N., Winter, K., Sage, R. F., Aguilar, C. N., Schmutz, J., Jenkins, J. & Holtum, J. A. M., Aug 1 2015, In : New Phytologist. 207, 3, p. 491-504 14 p.

Research output: Contribution to journalComment/debate

Crassulacean acid metabolism
bioenergy
Food
Acids
Research

Assembling allopolyploid genomes: No longer formidable

Ming, R. R. & Man Wai, C., Jan 31 2015, In : Genome biology. 16, 1, 27.

Research output: Contribution to journalArticle

allopolyploidy
genome
Genome
Chromosome Mapping
Firearms

AtNIGT1/HRS1 integrates nitrate and phosphate signals at the Arabidopsis root tip

Medici, A., Marshall-Colon, A., Ronzier, E., Szponarski, W., Wang, R., Gojon, A., Crawford, N. M., Ruffel, S., Coruzzi, G. M. & Krouk, G., Feb 27 2015, In : Nature communications. 6, 6274.

Research output: Contribution to journalArticle

Meristem
Arabidopsis
Nitrates
Global Atmospheric Research Program
nitrates

Backbones of evolutionary history test biodiversity theory for microbes

O'Dwyer, J. P., Kembel, S. W., Sharpton, T. J. & Pacala, S. W., Jul 7 2015, In : Proceedings of the National Academy of Sciences of the United States of America. 112, 27, p. 8356-8361 6 p.

Research output: Contribution to journalArticle

Biodiversity
History
Ecology
Ecosystem
Theoretical Models

Bees in bonnets (and purses)

Berenbaum, M., Jun 1 2015, In : American Entomologist. 61, 2, p. 69-71 3 p.

Research output: Contribution to journalArticle

bee
Apoidea

Bioenergy crop greenhouse gas mitigation potential under a range of management practices

Hudiburg, T. W., Davis, S. C., Parton, W. & Delucia, E. H., Mar 1 2015, In : GCB Bioenergy. 7, 2, p. 366-374 9 p.

Research output: Contribution to journalArticle

range management
energy crops
bioenergy
greenhouse gases
Greenhouse gases

Biogeochemical consequences of regional land use change to a biofuel crop in the southeastern United States

Duval, B. D., Hartman, M., Marx, E., Parton, W. J., Long, S. P. & DeLucia, E. H., Dec 1 2015, In : Ecosphere. 6, 12, 265.

Research output: Contribution to journalArticle

energy crops
canes
Southeastern United States
biofuel
land use change