Research Output

Classifying black and white spruce pollen using layered machine learning

Punyasena, S. W., Tcheng, D. K., Wesseln, C. & Mueller, P. G., Nov 1 2012, In : New Phytologist. 196, 3, p. 937-944 8 p.

Research output: Contribution to journalArticle

Climate change: Resetting plant-insect interactions

DeLucia, E. H., Nabity, P. D., Zavala, J. A. & Berenbaum, M. R., Dec 1 2012, In : Plant physiology. 160, 4, p. 1677-1685 9 p.

Research output: Contribution to journalArticle

Climate change and the integrity of science

Sills, J., Gleick, P. H., Adams, R. M., Amasino, R. M., Anders, E., Anderson, D. J., Anderson, W. W., Anselin, L. E., Arroyo, M. K., Asfaw, B., Ayala, F. J., Bax, A., Bebbington, A. J., Bell, G., Bennett, M. V. L., Bennetzen, J. L., Berenbaum, M. R., Berlin, O. B., Bjorkman, P. J., Blackburn, E. & 236 others, Blamont, J. E., Botchan, M. R., Boyer, J. S., Boyle, E. A., Branton, D., Briggs, S. P., Briggs, W. R., Brill, W. J., Britten, R. J., Broecker, W. S., Brown, J. H., Brown, P. O., Brunger, A. T., Cairns, J., Canfield, D. E., Carpenter, S. R., Carrington, J. C., Cashmore, A. R., Castilla, J. C., Cazenave, A., Chapin, F. S., Ciechanover, A. J., Clapham, D. E., Clark, W. C., Clayton, R. N., Coe, M. D., Conwell, E. M., Cowling, E. B., Cowling, R. M., Cox, C. S., Croteau, R. B., Crothers, D. M., Crutzen, P. J., Daily, G. C., Dalrymple, G. B., Dangl, J. L., Darst, S. A., Davies, D. R., Davis, M. B., De Camilli, P. V., Dean, C., Defries, R. S., Deisenhofer, J., Delmer, D. P., Delong, E. F., Derosier, D. J., Diener, T. O., Dirzo, R., Dixon, J. E., Donoghue, M. J., Doolittle, R. F., Dunne, T., Ehrlich, P. R., Eisenstadt, S. N., Eisner, T., Emanuel, K. A., Englander, S. W., Ernst, W. G., Falkowski, P. G., Feher, G., Ferejohn, J. A., Fersht, A., Fischer, E. H., Fischer, R., Flannery, K. V., Frank, J., Frey, P. A., Fridovich, I., Frieden, C., Futuyma, D. J., Gardner, W. R., Garrett, C. J. R., Gilbert, W., Goldberg, R. B., Goodenough, W. H., Goodman, C. S., Goodman, M., Greengard, P., Hake, S., Hammel, G., Hanson, S., Harrison, S. C., Hart, S. R., Hartl, D. L., Haselkorn, R., Hawkes, K., Hayes, J. M., Hille, B., Hökfelt, T., House, J. S., Hout, M., Hunten, D. M., Izquierdo, I. A., Jagendorf, A. T., Janzen, D. H., Jeanloz, R., Jencks, C. S., Jury, W. A., Kaback, H. R., Kailath, T., Kay, P., Kay, S. A., Kennedy, D., Kerr, A., Kessler, R. C., Khush, G. S., Kieffer, S. W., Kirch, P. V., Kirk, K., Kivelson, M. G., Klinman, J. P., Klug, A., Knopoff, L., Kornberg, H., Kutzbach, J. E., Lagarias, J. C., Lambeck, K., Landy, A., Langmuir, C. H., Larkins, B. A., Pichon, X. T. L. E., Lenski, R. E., Leopold, E. B., Levin, S. A., Levitt, M., Likens, G. E., Lippincott-Schwartz, J., Lorand, L., Lovejoy, C. O., Lynch, M., Mabogunje, A. L., Malone, T. F., Manabe, S., Marcus, J., Massey, D. S., Mcwilliams, J. C., Medina, E., Melosh, H. J., Meltzer, D. J., Michener, C. D., Miles, E. L., Mooney, H. A., Moore, P. B., Morel, F. M. M., Mosley-Thompson, E. S., Moss, B., Munk, W. H., Myers, N., Nair, G. B., Nathans, J., Nester, E. W., Nicoll, R. A., Novick, R. P., O'Connell, J. F., Olsen, P. E., Opdyke, N. D., Oster, G. F., Ostrom, E., Pace, N. R., Paine, R. T., Palmiter, R. D., Pedlosky, J., Petsko, G. A., Pettengill, G. H., Philander, S. G., Piperno, D. R., Pollard, T. D., Price, P. B., Reichard, P. A., Reskin, B. F., Ricklefs, R. E., Rivest, R. L., Roberts, J. D., Romney, A. K., Rossmann, M. G., Russell, D. W., Rutter, W. J., Sabloff, J. A., Sagdeev, R. Z., Sahlins, M. D., Salmond, A., Sanes, J. R., Schekman, R., Schellnhuber, J., Schindler, D. W., Schmitt, J., Schneider, S. H., Schramm, V. L., Sederoff, R. R., Shatz, C. J., Sherman, F., Sidman, R. L., Sieh, K., Simons, E. L., Singer, B. H., Singer, M. F., Skyrms, B., Sleep, N. H., Smith, B. D., Snyder, S. H., Sokal, R. R., Spencer, C. S., Steitz, T. A., Strier, K. B., Südhof, T. C., Taylor, S. S., Terborgh, J., Thomas, D. H., Thompson, L. G., Tjian, R. T., Turner, M. G., Uyeda, S., Valentine, J. W., Valentine, J. S., Van Etten, J. L., Van Holde, K. E., Vaughan, M., Verba, S., Von Hippel, P. H., Wake, D. B., Walker, A., Walker, J. E., Watson, E. B., Watson, P. J., Weigel, D., Wessler, S. R., West-Eberhard, M. J., White, T. D., Wilson, W. J., Wolfenden, R. V., Wood, J. A., Woodwell, G. M., Wright, H. E., Wu, C., Wunsch, C. & Zoback, M. L., May 7 2010, In : Science. 328, 5979, p. 689-690 2 p.

Research output: Contribution to journalLetter

Climate-driven changes in biomass allocation in pines

DeLucia, E. H., Maherali, H. & Carey, E. V., Jun 1 2000, In : Global change biology. 6, 5, p. 587-593 7 p.

Research output: Contribution to journalArticle

Climate impacts on agriculture: Implications for crop production

Hatfield, J. L., Boote, K. J., Kimball, B. A., Ziska, L. H., Izaurralde, R. C., Ort, D., Thomson, A. M. & Wolfe, D., Mar 1 2011, In : Agronomy Journal. 103, 2, p. 351-370 20 p.

Research output: Contribution to journalArticle

Climate influences on water and sediment properties of Genovesa Crater Lake, Galápagos

Conroy, J. L., Thompson, D. M., Collins, A., Overpeck, J. T., Bush, M. B. & Cole, J. E., Jan 1 2014, In : Journal of Paleolimnology. 52, 4, p. 331-347 17 p.

Research output: Contribution to journalArticle

Climate modifies response of non-native and native species richness to nutrient enrichment

Flores-Moreno, H., Reich, P. B., Lind, E. M., Sullivan, L. L., Seabloom, E. W., Yahdjian, L., MacDougall, A. S., Reichmann, L. G., Alberti, J., Báez, S., Bakker, J. D., Cadotte, M. W., Caldeira, M. C., Chaneton, E. J., D’Antonio, C. M., Fay, P. A., Firn, J., Hagenah, N., Harpole, W. S., Iribarne, O. & 9 others, Kirkman, K. P., Knops, J. M. H., La Pierre, K. J., Laungani, R., Leakey, A. D. B., McCulley, R. L., Moore, J. L., Pascual, J. & Borer, E. T., May 19 2016, In : Philosophical Transactions of the Royal Society B: Biological Sciences. 371, 1694, 20150273.

Research output: Contribution to journalArticle

Climate refugia: From the last glacial maximum to the twenty-first century

Hampe, A., Rodríguez-Sánchez, F., Dobrowski, S., Hu, F. S. & Gavin, D. G., Jan 1 2013, In : New Phytologist. 197, 1, p. 16-18 3 p.

Research output: Contribution to journalArticle

Climate refugia: Joint inference from fossil records, species distribution models and phylogeography

Gavin, D. G., Fitzpatrick, M. C., Gugger, P. F., Heath, K. D., Rodríguez-Sánchez, F., Dobrowski, S. Z., Hampe, A., Hu, F. S., Ashcroft, M. B., Bartlein, P. J., Blois, J. L., Carstens, B. C., Davis, E. B., de Lafontaine, G., Edwards, M. E., Fernandez, M., Henne, P. D., Herring, E. M., Holden, Z. A., Kong, W. S. & 8 others, Liu, J., Magri, D., Matzke, N. J., Mcglone, M. S., Saltré, F., Stigall, A. L., Tsai, Y. H. E. & Williams, J. W., Oct 2014, In : New Phytologist. 204, 1, p. 37-54 18 p.

Research output: Contribution to journalReview article

Climate-regulation services of natural and agricultural ecoregions of the Americas

Anderson-Teixeira, K. J., Snyder, P. K., Twine, T. E., Cuadra, S. V., Costa, M. H. & Delucia, E. H., Mar 1 2012, In : Nature Climate Change. 2, 3, p. 177-181 5 p.

Research output: Contribution to journalArticle

Climatic and land cover influences on the spatiotemporal dynamics of Holocene boreal fire regimes

Barrett, C. M., Kelly, R., Higuera, P. E. & Hu, F. S., Feb 1 2013, In : Ecology. 94, 2, p. 389-402 14 p.

Research output: Contribution to journalArticle

Climatic and landscape controls of the boreal forest fire regime: Holocene records from Alaska

Lynch, J. A., Hollis, J. L. & Hu, F. S., Jun 1 2004, In : Journal of Ecology. 92, 3, p. 477-489 13 p.

Research output: Contribution to journalArticle

Climatic effects of glacial Lake Agassiz in the midwestern United States during the last deglaciation

Hu, F. S., Wright, H. E., Ito, E. & Lease, K., Jan 1 1997, In : Geology. 25, 3, p. 207-210 4 p.

Research output: Contribution to journalArticle

Climatic thresholds shape northern high-latitude fire regimes and imply vulnerability to future climate change

Young, A. M., Higuera, P. E., Duffy, P. A. & Hu, F. S., May 2017, In : Ecography. 40, 5, p. 606-617 12 p.

Research output: Contribution to journalArticle

Cloning major genes controlling fruit flesh color in papaya

Aryal, R. & Ming, R., Jan 1 2014, Genetics and Genomics of Papaya. Springer New York, p. 341-353 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Cloning of the papaya chromoplast-specific lycopene β-cyclase, CpCYC-b, controlling fruit flesh color reveals conserved microsynteny and a recombination hot spot

Blas, A. L., Ming, R., Liu, Z., Veatch, O. J., Paull, R. E., Moore, P. H. & Yu, Q., Apr 1 2010, In : Plant physiology. 152, 4, p. 2013-2022 10 p.

Research output: Contribution to journalArticle

Cloning of the pea cdc2 homologue by efficient immunological screening of PCR products

Feiler, H. S. & Jacobs, T. W., Sep 1 1991, In : Plant Molecular Biology. 17, 3, p. 321-333 13 p.

Research output: Contribution to journalArticle

Cloning of wound-induced cytochrome P450 monooxygenases expressed in pea

Frank, M. R., Deyneka, J. M. & Schuler, M. A., Mar 1996, In : Plant physiology. 110, 3, p. 1035-1046 12 p.

Research output: Contribution to journalArticle

Closely related families of genes code for the α and α' subunits of the soybean 7S storage protein complex

Schuler, M. A., Schmitt, E. S. & Beachy, R. N., Dec 20 1982, In : Nucleic acids research. 10, 24, p. 8225-8244 20 p.

Research output: Contribution to journalArticle

Cloudy, with a chance of butterflies

Berenbaum, M., Mar 1 2004, In : American Entomologist. 50, 1, p. 4-5 2 p.

Research output: Contribution to journalArticle

CNB: Requiescat in pace?

Nitao, J. K., Zangerl, A. R., Berenbaum, M. R., Hamilton, J. G. & DeLucia, E. H., Sep 1 2002, In : Oikos. 98, 3, p. 540-546 7 p.

Research output: Contribution to journalReview article

CO2 uptake and ecophysiological parameters of the grain crops of midcontinent North America: Estimates from flux tower measurements

Gilmanov, T. G., Wylie, B. K., Tieszen, L. L., Meyers, T. P., Baron, V. S., Bernacchi, C. J., Billesbach, D. P., Burba, G. G., Fischer, M. L., Glenn, A. J., Hanan, N. P., Hatfield, J. L., Heuer, M. W., Hollinger, S. E., Howard, D. M., Matamala, R., Prueger, J. H., Tenuta, M. & Young, D. G., Jan 1 2013, In : Agriculture, Ecosystems and Environment. 164, p. 162-175 14 p.

Research output: Contribution to journalArticle

Coevolutionary constraints? The environment alters tripartite interaction traits in a Legume

Heath, K. D. & McGhee, K. E., Jul 30 2012, In : PloS one. 7, 7, e41567.

Research output: Contribution to journalArticle

Coevolutionary genetic variation in the legume-rhizobium transcriptome

Heath, K. D., Burke, P. V. & Stinchcombe, J. R., Oct 1 2012, In : Molecular ecology. 21, 19, p. 4735-4747 13 p.

Research output: Contribution to journalArticle

"Coevolution' between parsnip webworms and wild parsnips: should the "co' go?

Berenbaum, M. R., Jan 1 1991, In : Unknown Journal. p. 331-336 6 p.

Research output: Contribution to journalArticle

Coffee germplasm resources, genomics, and breeding

Vega, F. E., Ebert, A. W. & Ming, R., Jan 1 2008, Plant Breeding Reviews. John Wiley and Sons Inc., Vol. 30. p. 415-447 33 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Cold tolerance of C4 photosynthesis in Miscanthus x giganteus: Adaptation in amounts and sequence of C4 photosynthetic enzymes

Naidu, S. L., Moose, S. P., AL-Shoaibi, A. K., Raines, C. A. & Long, S. P., Jul 1 2003, In : Plant physiology. 132, 3, p. 1688-1697 10 p.

Research output: Contribution to journalArticle

Colin A. Wraight, 1945-2014

Govindjee, Prince, R. C. & Ort, D. R., Feb 1 2016, In : Photosynthesis research. 127, 2, p. 237-256 20 p.

Research output: Contribution to journalArticle

Collar ID

Berenbaum, M., Jan 1 2005, In : American Entomologist. 51, 3, p. 132-150 19 p.

Research output: Contribution to journalArticle

Combined effects of elevated CO2 and natural climatic variation on leaf spot diseases of redbud and sweetgum trees

McElrone, A. J., Hamilton, J. G., Krafnick, A. J., Aldea, M., Knepp, R. G. & DeLucia, E. H., Jan 1 2010, In : Environmental Pollution. 158, 1, p. 108-114 7 p.

Research output: Contribution to journalArticle

Comment on "The response of vegetation on the Andean flank in Western Amazonia to Pleistocene climate change"

Punyasena, S. W., Dalling, J. W., Jaramillo, C. & Turner, B. L., Sep 30 2011, In : Science. 333, 6051, p. 1825b

Research output: Contribution to journalComment/debate

Common active site architecture and binding strategy of four phenylpropanoid P450s from Arabidopsis thaliana as revealed by molecular modeling

Rupasinghe, S., Baudry, J. & Schuler, M. A., Oct 1 2003, In : Protein Engineering. 16, 10, p. 721-731 11 p.

Research output: Contribution to journalArticle

Comparative Analysis of GC Content Variations in Plant Genomes

Singh, R., Ming, R. & Yu, Q., Sep 1 2016, In : Tropical Plant Biology. 9, 3, p. 136-149 14 p.

Research output: Contribution to journalArticle

Comparative analysis of homologous sequences of saccharum officinarum and saccharum spontaneum reveals independent polyploidization events

Sharma, A., Song, J., Lin, Q., Singh, R., Ramos, N., Wang, K., Zhang, J., Ming, R. & Yu, Q., Sep 25 2018, In : Frontiers in Plant Science. 9, 1414.

Research output: Contribution to journalArticle

Comparative Analysis of SUS Gene Family between Saccharum officinarum and Saccharum spontaneum

Shi, Y., Xu, H., Shen, Q., Lin, J., Wang, Y., Hua, X., Yao, W., Yu, Q., Ming, R. & Zhang, J., Sep 1 2019, In : Tropical Plant Biology. 12, 3, p. 174-185 12 p.

Research output: Contribution to journalArticle

Comparative biogeochemical cycles of bioenergy crops reveal nitrogen-fixation and low greenhouse gas emissions in a Miscanthus × giganteus agro-ecosystem

Davis, S. C., Parton, W. J., Dohleman, F. G., Smith, C. M., Del Grosso, S., Kent, A. D. & Delucia, E. H., Feb 1 2010, In : Ecosystems. 13, 1, p. 144-156 13 p.

Research output: Contribution to journalArticle

Comparative CYP‐omic analysis between the DDT‐susceptible and ‐resistant Drosophila melanogaster strains 91‐C and 91‐R

Seong, K. M., Coates, B. S., Berenbaum, M. R., Clark, J. M. & Pittendrigh, B. R., Nov 2018, In : Pest Management Science. 74, 11, p. 2530-2543 14 p.

Research output: Contribution to journalArticle

Comparative genomics of plant chromosomes

Paterson, A. H., Bowers, J. E., Burow, M. D., Draye, X., Elsik, C. G., Jiang, C. X., Katsar, C. S., Lan, T. H., Lin, Y. R., Ming, R. & Wright, R. J., Jan 1 2000, In : Plant Cell. 12, 9, p. 1523-1539 17 p.

Research output: Contribution to journalArticle

Comparative genomics of rice and arabidopsis. Analysis of 727 cytochrome P450 genes and pseudogenes from a monocot and a dicot

Nelson, D. R., Schuler, M. A., Paquette, S. M., Werck-Reichhart, D. & Bak, S., Jun 1 2004, In : Plant physiology. 135, 2, p. 756-772 17 p.

Research output: Contribution to journalArticle

Comparative genomics revealed the gene evolution and functional divergence of magnesium transporter families in Saccharum

Wang, Y., Hua, X., Xu, J., Chen, Z., Fan, T., Zeng, Z., Wang, H., Hour, A. L., Yu, Q., Ming, R. & Zhang, J., Jan 24 2019, In : BMC genomics. 20, 1, 5437.

Research output: Contribution to journalArticle

Comparative molecular modeling of Anopheles gambiae CYP6Z1, a mosquito P450 capable of metabolizing DDT

Chiu, T. L., Wen, Z., Rupasinghe, S. G. & Schuler, M. A., Jul 1 2008, In : Proceedings of the National Academy of Sciences of the United States of America. 105, 26, p. 8855-8860 6 p.

Research output: Contribution to journalArticle

Comparative structural analysis of Bru1 region homeologs in Saccharum spontaneum and S. officinarum

Zhang, J., Sharma, A., Yu, Q., Wang, J., Li, L., Zhu, L., Zhang, X., Chen, Y. & Ming, R., Jun 10 2016, In : BMC genomics. 17, 1, 446.

Research output: Contribution to journalArticle

Comparative studies of the light modulation of nitrate reductase and sucrose-phosphate synthase activities in spinach leaves

Huber, S. C., Huber, J. L., Campbell, W. H. & Redinbaugh, M. G., Jan 1 1992, In : Plant physiology. 100, 2, p. 706-712 7 p.

Research output: Contribution to journalArticle

Comparative toxicity of mycotoxins to navel orangeworm (Amyelois transitella) and corn earworm (Helicoverpa zea)

Niu, G., Siegel, J., Schuler, M. A. & Berenbaum, M. R., Aug 14 2009, In : Journal of Chemical Ecology. 35, 8, p. 951-957 7 p.

Research output: Contribution to journalArticle

Comparing DNA, RNA and protein levels for measuring microbial dynamics in soil microcosms amended with nitrogen fertilizer

Orellana, L. H., Hatt, J. K., Iyer, R., Chourey, K., Hettich, R. L., Spain, J. C., Yang, W. H., Chee-Sanford, J. C., Sanford, R. A., Löffler, F. E. & Konstantinidis, K. T., Dec 1 2019, In : Scientific reports. 9, 1, 17630.

Research output: Contribution to journalArticle

Open Access

Comparing photosynthetic and photovoltaic efficiencies and recognizing the potential for improvement

Blankenship, R. E., Tiede, D. M., Barber, J., Brudvig, G. W., Fleming, G., Ghirardi, M., Gunner, M. R., Junge, W., Kramer, D. M., Melis, A., Moore, T. A., Moser, C. C., Nocera, D. G., Nozik, A. J., Ort, D. R., Parson, W. W., Prince, R. C. & Sayre, R. T., May 13 2011, In : Science. 332, 6031, p. 805-809 5 p.

Research output: Contribution to journalReview article