Research Output 1975 2020

2016

Carbon Flux and Carbohydrate Gene Families in Pineapple

Paull, R. E., Chen, N. J., Ming, R. R., Wai, C. M., Shirley, N., Schwerdt, J. & Bulone, V., Sep 1 2016, In : Tropical Plant Biology. 9, 3, p. 200-213 14 p.

Research output: Contribution to journalArticle

Ananas
Carbon Cycle
pineapples
Carbohydrates
carbohydrates

Carbon isotope analyses reveal relatively high abundance of C4 grasses during early-middle Miocene in southwestern Europe

Urban, M. A., Nelson, D. M., Jiménez-Moreno, G. & Hu, F. S., Feb 1 2016, In : Palaeogeography, Palaeoclimatology, Palaeoecology. 443, p. 10-17 8 p.

Research output: Contribution to journalArticle

carbon isotope
isotopes
Miocene
grass
grasses

Chance the wrapper

Berenbaum, M. R., Dec 1 2016, In : American Entomologist. 62, 4, p. 203-205 3 p.

Research output: Contribution to journalComment/debate

Photosynthesis
Ozone
Soybeans
Nitrogen
Light

Climate modifies response of non-native and native species richness to nutrient enrichment

Flores-Moreno, H., Reich, P. B., Lind, E. M., Sullivan, L. L., Seabloom, E. W., Yahdjian, L., MacDougall, A. S., Reichmann, L. G., Alberti, J., Báez, S., Bakker, J. D., Cadotte, M. W., Caldeira, M. C., Chaneton, E. J., D’Antonio, C. M., Fay, P. A., Firn, J., Hagenah, N., Harpole, W. S., Iribarne, O. & 9 others, Kirkman, K. P., Knops, J. M. H., La Pierre, K. J., Laungani, R., Leakey, A. D. B., McCulley, R. L., Moore, J. L., Pascual, J. & Borer, E. T., May 19 2016, In : Philosophical Transactions of the Royal Society B: Biological Sciences. 371, 1694, 20150273.

Research output: Contribution to journalArticle

Climate
Nutrients
eutrophication
indigenous species
climate

Colin A. Wraight, 1945-2014

Govindjee, Prince, R. C. & Ort, D. R., Feb 1 2016, In : Photosynthesis research. 127, 2, p. 237-256 20 p.

Research output: Contribution to journalArticle

Electrons
Biophysics
photochemical reactions
biophysics
Biochemistry

Comparative Analysis of GC Content Variations in Plant Genomes

Singh, R., Ming, R. & Yu, Q., Sep 1 2016, In : Tropical Plant Biology. 9, 3, p. 136-149 14 p.

Research output: Contribution to journalArticle

Plant Genome
Base Composition
genome
exons
Genome

Comparative structural analysis of Bru1 region homeologs in Saccharum spontaneum and S. officinarum

Zhang, J., Sharma, A., Yu, Q., Wang, J., Li, L., Zhu, L., Zhang, X., Chen, Y. & Ming, R., Jun 10 2016, In : BMC genomics. 17, 1, 446.

Research output: Contribution to journalArticle

Saccharum
Haplotypes
Genome
Retroelements
Chromosomes

Comparing predicted yield and yield stability of willow and Miscanthus across Denmark

Larsen, S., Jaiswal, D., Bentsen, N. S., Wang, D. & Long, S. P., Nov 1 2016, In : GCB Bioenergy. 8, 6, p. 1061-1070 10 p.

Research output: Contribution to journalArticle

Miscanthus
Denmark
Soils
Crops
bioenergy

Comparing process-based and constraint-based approaches for modeling macroecological patterns

Xiao, X., O'Dwyer, J. P. & White, E. P., May 1 2016, In : Ecology. 97, 5, p. 1228-1238 11 p.

Research output: Contribution to journalArticle

modeling
entropy
body size
ecology
forest communities

Decoupled genomic elements and the evolution of partner quality in nitrogen-fixing rhizobia

Gordon, B. R., Klinger, C. R., Weese, D. J., Lau, J. A., Burke, P. V., Dentinger, B. T. M. & Heath, K. D., Mar 1 2016, In : Ecology and Evolution. 6, 5, p. 1317-1327 11 p.

Research output: Contribution to journalArticle

rhizobacterium
Rhizobium
genomics
nitrogen
mutualism

Depressaria depressana (fabricius) (depressariidae), new to the Midwestern USA

Harrison, T., Dean, C. A. E., Parks, K. & Berenbaum, M. R., Jun 1 2016, In : Journal of the Lepidopterists' Society. 70, 2, p. 169-173 5 p.

Research output: Contribution to journalArticle

Asteraceae
Expressed Sequence Tags
Population Genetics
Genetic Markers
Microsatellite Repeats

Dioecy does not consistently accelerate or slow lineage diversification across multiple genera of angiosperms

Sabath, N., Goldberg, E. E., Glick, L., Einhorn, M., Ashman, T. L., Ming, R., Otto, S. P., Vamosi, J. C. & Mayrose, I., Feb 1 2016, In : New Phytologist. 209, 3, p. 1290-1300 11 p.

Research output: Contribution to journalArticle

dioecy
Angiosperms
Angiospermae
sexual systems
extinction
aggregate exposure
Honey
Bees
agroecosystems
Pesticides
community ecology
microbial ecology
democratization
experimental design
targeting

Ecological genomics of mutualism decline in nitrogen-fixing bacteria

Klinger, C. R., Lau, J. A. & Heath, K. D., Mar 9 2016, In : Proceedings of the Royal Society B: Biological Sciences. 283, 1826, 20152563.

Research output: Contribution to journalArticle

nitrogen-fixing bacteria
Symbiosis
mutualism
Genomics
rhizobacterium
Chytridiomycota
Monosaccharide Transport Proteins
Amphibians
Pathogens
Eukaryota
Borneo
Macaranga
Euphorbiaceae
light requirement
Regeneration

Evidence for arrested succession in a liana-infested Amazonian forest

Tymen, B., Réjou-Méchain, M., Dalling, J. W., Fauset, S., Feldpausch, T. R., Norden, N., Phillips, O. L., Turner, B. L., Viers, J. & Chave, J., Jan 1 2016, In : Journal of Ecology. 104, 1, p. 149-159 11 p.

Research output: Contribution to journalArticle

forest succession
forest canopy
tropical forests
tropical forest
carbon sinks

Extremely low nucleotide diversity in the X-linked region of papaya caused by a strong selective sweep

VanBuren, R., Wai, C. M., Zhang, J., Han, J., Arro, J., Lin, Z., Liao, Z., Yu, Q., Wang, M. L., Zee, F., Moore, R. C., Charlesworth, D. & Ming, R., Nov 28 2016, In : Genome biology. 17, 1, 230.

Research output: Contribution to journalArticle

Carica
papayas
Nucleotides
nucleotides
X-Linked Genes

Factors underlying genotypic differences in the induction of photosynthesis in soybean [Glycine max (L.) Merr.]

Soleh, M. A., Tanaka, Y., Nomoto, Y., Iwahashi, Y., Nakashima, K., Fukuda, Y., Long, S. P. & Shiraiwa, T., Mar 1 2016, In : Plant Cell and Environment. 39, 3, p. 685-693 9 p.

Research output: Contribution to journalArticle

Photosynthesis
Soybeans
Glycine max
Oxygenases
ribulose 1,5-diphosphate

Focus on ecophysiology

Ainsworth, E. A., Bernacchi, C. J. & Dohleman, F. G., Oct 2016, In : Plant physiology. 172, 2, p. 619-621 3 p.

Research output: Contribution to journalEditorial

ecophysiology

GCB-Bioenergy reaches a new high in impact factor and goes open access

Kressman, R. & Long, S., Jan 1 2016, In : GCB Bioenergy. 8, 1, 1 p.

Research output: Contribution to journalEditorial

bioenergy

Genetic and physiological diversity in the leaf photosynthetic capacity of soybean

Sakoda, K., Tanaka, Y., Long, S. P. & Shiraiwa, T., Sep 1 2016, In : Crop Science. 56, 5, p. 2731-2741 11 p.

Research output: Contribution to journalArticle

soybeans
genotype
leaves
carboxylation
ribulose 1,5-diphosphate

Genome-Wide Comparative Analysis of Microsatellites in Pineapple

Fang, J., Miao, C., Chen, R. & Ming, R., Sep 1 2016, In : Tropical Plant Biology. 9, 3, p. 117-135 19 p.

Research output: Contribution to journalArticle

Ananas
pineapples
expressed sequence tags
Expressed Sequence Tags
Microsatellite Repeats

Genome-Wide Identification and Analysis of Genes Encoding Proteolytic Enzymes in Pineapple

Wai, C. M., Powell, B., Ming, R. R. & Min, X. J., Sep 1 2016, In : Tropical Plant Biology. 9, 3, p. 161-175 15 p.

Research output: Contribution to journalArticle

Ananas
pineapples
Peptide Hydrolases
Genome
genome

Genome-Wide Identification and Characterization of Nucleotide-Binding Site (NBS) Resistance Genes in Pineapple

Zhang, X., Liang, P. & Ming, R. R., Sep 1 2016, In : Tropical Plant Biology. 9, 3, p. 187-199 13 p.

Research output: Contribution to journalArticle

Ananas
pineapples
binding sites
Nucleotides
nucleotides

Geographic, environmental and biotic sources of variation in the nutrient relations of tropical montane forests

Dalling, J. W., Heineman, K., González, G. & Ostertag, R., Sep 1 2016, In : Journal of Tropical Ecology. 32, 5, p. 368-383 16 p.

Research output: Contribution to journalArticle

montane forest
montane forests
tropical forests
tropical forest
nutrient

Grass pollen surface ornamentation: A review of morphotypes and taxonomic utility

Mander, L. & Punyasena, S. W., Jul 1 2016, In : Journal of Micropalaeontology. 35, 2, p. 121-124 4 p.

Research output: Contribution to journalReview article

ornamentation
morphotype
pollen
grass
scanning electron microscopy

Gross nitrous oxide production drives net nitrous oxide fluxes across a salt marsh landscape

Yang, W. H. & Silver, W. L., Jun 1 2016, In : Global change biology. 22, 6, p. 2228-2237 10 p.

Research output: Contribution to journalArticle

Nitrous Oxide
nitrous oxide
saltmarsh
marsh
Salts

Has photosynthetic capacity increased with 80years of soybean breeding? An examination of historical soybean cultivars

Koester, R. P., Nohl, B. M., Diers, B. W. & Ainsworth, E., May 1 2016, In : Plant Cell and Environment. 39, 5, p. 1058-1067 10 p.

Research output: Contribution to journalReview article

Soybeans
Breeding
Biomass
soybeans
breeding

Has the sensitivity of soybean cultivars to ozone pollution increased with time? An analysis of published dose-response data

Osborne, S. A., Mills, G., Hayes, F., Ainsworth, E. A., Büker, P. & Emberson, L., Sep 1 2016, In : Global change biology. 22, 9, p. 3097-3111 15 p.

Research output: Contribution to journalArticle

Air Pollutants
Dietary Proteins
Ozone
Physiology
Glycine

High C3 photosynthetic capacity and high intrinsic water use efficiency underlies the high productivity of the bioenergy grass Arundo donax

Webster, R. J., Driever, S. M., Kromdijk, J., McGrath, J., Leakey, A. D. B., Siebke, K., Demetriades-Shah, T., Bonnage, S., Peloe, T., Lawson, T. & Long, S. P., Feb 10 2016, In : Scientific reports. 6, 20694.

Research output: Contribution to journalArticle

Poaceae
Light
Water
Ribulose-Bisphosphate Carboxylase
Portugal

Holocene climate changes in eastern Beringia (NW North America) – A systematic review of multi-proxy evidence

Kaufman, D. S., Axford, Y. L., Henderson, A. C. G., McKay, N. P., Oswald, W. W., Saenger, C., Anderson, R. S., Bailey, H. L., Clegg, B., Gajewski, K., Hu, F. S., Jones, M. C., Massa, C., Routson, C. C., Werner, A., Wooller, M. J. & Yu, Z., Sep 1 2016, In : Quaternary Science Reviews. 147, p. 312-339 28 p.

Research output: Contribution to journalArticle

Beringia
systematic review
climate change
Holocene
climate

Honeypot-luck

Berenbaum, M. R., Mar 1 2016, In : American Entomologist. 62, 1, p. 3-5 3 p.

Research output: Contribution to journalArticle

How ICE came to America (The first time)

Berenbaum, M., Jan 1 2016, In : American Entomologist. 62, 3, p. 163-171 9 p.

Research output: Contribution to journalArticle

Identification of microRNAs, phasiRNAs and Their Targets in Pineapple

Zheng, Y., Li, T., Xu, Z., Wai, C. M., Chen, K., Zhang, X., Wang, S., Ji, B., Ming, R. & Sunkar, R., Sep 1 2016, In : Tropical Plant Biology. 9, 3, p. 176-186 11 p.

Research output: Contribution to journalArticle

Ananas
pineapples
small interfering RNA
MicroRNAs
microRNA

Impact of Pesticide Resistance on Toxicity and Tolerance of Hostplant Phytochemicals in Amyelois Transitella (Lepidoptera: Pyralidae)

Bagchi, V. A., Siegel, J. P., Demkovich, M. R., Zehr, L. N. & Berenbaum, M. R., Jan 1 2016, In : Journal of insect science (Online). 16, 1

Research output: Contribution to journalArticle

Amyelois transitella
pesticide resistance
Pyralidae
phytopharmaceuticals
bifenthrin

Impacts of a 32-billion-gallon bioenergy landscape on land and fossil fuel use in the US

Hudiburg, T. W., Wang, W., Khanna, M., Long, S. P., Dwivedi, P., Parton, W. J., Hartman, M. & Delucia, E. H., Jan 11 2016, In : Nature Energy. 1, 1, 15005.

Research output: Contribution to journalArticle

Biofuels
Fossil fuels
Gas emissions
Greenhouse gases
Land use

Improving photosynthesis and crop productivity by accelerating recovery from photoprotection

Kromdijk, J., Głowacka, K., Leonelli, L., Gabilly, S. T., Iwai, M., Niyogi, K. K. & Long, S. P., Nov 18 2016, In : Science. 354, 6314, p. 857-861 5 p.

Research output: Contribution to journalArticle

Photosynthesis
Tobacco
Light
Bioengineering
Sunlight

Influence of transient flooding on methane fluxes from subtropical pastures

Chamberlain, S. D., Gomez-Casanovas, N., Walter, M. T., Boughton, E. H., Bernacchi, C., Delucia, E. H., Groffman, P. M., Keel, E. W. & Sparks, J. P., Mar 1 2016, In : Journal of Geophysical Research G: Biogeosciences. 121, 3, p. 965-977 13 p.

Research output: Contribution to journalArticle

tropical pastures
Methane
methane production
pasture
methane

Intensifying drought eliminates the expected benefits of elevated carbon dioxide for soybean

Gray, S. B., Dermody, O., Klein, S. P., Locke, A. M., McGrath, J. M., Paul, R. E., Rosenthal, D. M., Ruiz-Vera, U. M., Siebers, M. H., Strellner, R., Ainsworth, E. A., Bernacchi, C. J., Long, S. P., Ort, D. R. & Leakey, A. D. B., Sep 5 2016, In : Nature Plants. 2, 16132.

Research output: Contribution to journalArticle

carbon dioxide
drought
soybeans
field experimentation
crop losses

Interference by Iron in the Determination of Boron by ICP-OES in Mehlich-III Extracts and Total Element Digests of Tropical Forest Soils

Turner, B. L., Bielnicka, A. W., Dalling, J. W. & Wolf, J. A., Nov 29 2016, In : Communications in Soil Science and Plant Analysis. 47, 21, p. 2378-2386 9 p.

Research output: Contribution to journalArticle

tropical soil
tropical soils
atomic absorption spectrometry
boron
tropical forests

Interspecific variation in persistence of buried weed seeds follows trade-offs among physiological, chemical, and physical seed defenses

Davis, A. S., Fu, X., Schutte, B. J., Berhow, M. A. & Dalling, J. W., Oct 1 2016, In : Ecology and Evolution. 6, 19, p. 6836-6845 10 p.

Research output: Contribution to journalArticle

interspecific variation
buried seeds
weed
persistence
weeds

Intrapopulation genomics in a model mutualist: Population structure and candidate symbiosis genes under selection in Medicago truncatula

Grillo, M. A., De Mita, S., Burke, P. V., Solórzano-Lowell, K. L. S. & Heath, K. D., Dec 1 2016, In : Evolution. 70, 12, p. 2704-2717 14 p.

Research output: Contribution to journalArticle

Medicago truncatula
Metagenomics
Symbiosis
Genomics
symbiosis
Saturniidae
Comoros
Madagascar
Lepidoptera
male genitalia

Intraspecific variation in seed dispersal of a Neotropical tree and its relationship to fruit and tree traits

Augspurger, C. K., Franson, S. E., Cushman, K. C. & Muller-Landau, H. C., Feb 1 2016, In : Ecology and Evolution. 6, 4, p. 1128-1142 15 p.

Research output: Contribution to journalArticle

intraspecific variation
diaspore
seed dispersal
fruit
fruits

Investigating the Control of Chlorophyll Degradation by Genomic Correlation Mining

Ghandchi, F. P., Caetano-Anolles, G., Clough, S. J. & Ort, D. R., Sep 2016, In : PloS one. 11, 9, e0162327.

Research output: Contribution to journalArticle

Oxygenases
Chlorophyll
oxygenases
genomics
chlorophyll

Land cover influences boreal-forest fire responses to climate change: geospatial analysis of historical records from Alaska

Dash, C. B., Fraterrigo, J. M. & Hu, F. S., Oct 1 2016, In : Landscape Ecology. 31, 8, p. 1781-1793 13 p.

Research output: Contribution to journalArticle

historical record
forest fire
boreal forest
land cover
climate change