Research Output 1971 2019

2016

Identification of microRNAs, phasiRNAs and Their Targets in Pineapple

Zheng, Y., Li, T., Xu, Z., Wai, C. M., Chen, K., Zhang, X., Wang, S., Ji, B., Ming, R. R. & Sunkar, R., Sep 1 2016, In : Tropical Plant Biology. 9, 3, p. 176-186 11 p.

Research output: Contribution to journalArticle

Ananas
pineapples
small interfering RNA
MicroRNAs
microRNA

Impact of Pesticide Resistance on Toxicity and Tolerance of Hostplant Phytochemicals in Amyelois Transitella (Lepidoptera: Pyralidae)

Bagchi, V. A., Siegel, J. P., Demkovich, M. R., Zehr, L. N. & Berenbaum, M. R., Jan 1 2016, In : Journal of insect science (Online). 16, 1

Research output: Contribution to journalArticle

Amyelois transitella
pesticide resistance
Pyralidae
phytopharmaceuticals
bifenthrin

Impacts of a 32-billion-gallon bioenergy landscape on land and fossil fuel use in the US

Hudiburg, T. W., Wang, W., Khanna, M., Long, S. P., Dwivedi, P., Parton, W. J., Hartman, M. & Delucia, E. H., Jan 11 2016, In : Nature Energy. 1, 1, 15005.

Research output: Contribution to journalArticle

Biofuels
Fossil fuels
Gas emissions
Greenhouse gases
Land use

Improving photosynthesis and crop productivity by accelerating recovery from photoprotection

Kromdijk, J., Głowacka, K., Leonelli, L., Gabilly, S. T., Iwai, M., Niyogi, K. K. & Long, S. P., Nov 18 2016, In : Science. 354, 6314, p. 857-861 5 p.

Research output: Contribution to journalArticle

Photosynthesis
Tobacco
Light
Bioengineering
Sunlight

Influence of transient flooding on methane fluxes from subtropical pastures

Chamberlain, S. D., Gomez-Casanovas, N., Walter, M. T., Boughton, E. H., Bernacchi, C., Delucia, E. H., Groffman, P. M., Keel, E. W. & Sparks, J. P., Mar 1 2016, In : Journal of Geophysical Research G: Biogeosciences. 121, 3, p. 965-977 13 p.

Research output: Contribution to journalArticle

tropical pastures
Methane
methane production
pasture
methane

Intensifying drought eliminates the expected benefits of elevated carbon dioxide for soybean

Gray, S. B., Dermody, O., Klein, S. P., Locke, A. M., McGrath, J. M., Paul, R. E., Rosenthal, D. M., Ruiz-Vera, U. M., Siebers, M. H., Strellner, R., Ainsworth, E., Bernacchi, C., Long, S. P., Ort, D. R. & Leakey, A., Sep 5 2016, In : Nature Plants. 2, 16132.

Research output: Contribution to journalArticle

carbon dioxide
drought
soybeans
field experimentation
crop losses

Interference by Iron in the Determination of Boron by ICP-OES in Mehlich-III Extracts and Total Element Digests of Tropical Forest Soils

Turner, B. L., Bielnicka, A. W., Dalling, J. W. & Wolf, J. A., Nov 29 2016, In : Communications in Soil Science and Plant Analysis. 47, 21, p. 2378-2386 9 p.

Research output: Contribution to journalArticle

tropical soil
tropical soils
atomic absorption spectrometry
boron
tropical forests

Interspecific variation in persistence of buried weed seeds follows trade-offs among physiological, chemical, and physical seed defenses

Davis, A., Fu, X., Schutte, B. J., Berhow, M. A. & Dalling, J. W., Oct 1 2016, In : Ecology and Evolution. 6, 19, p. 6836-6845 10 p.

Research output: Contribution to journalArticle

interspecific variation
buried seeds
weed
persistence
weeds

Intrapopulation genomics in a model mutualist: Population structure and candidate symbiosis genes under selection in Medicago truncatula

Grillo, M. A., De Mita, S., Burke, P. V., Solórzano-Lowell, K. L. S. & Heath, K. D., Dec 1 2016, In : Evolution. 70, 12, p. 2704-2717 14 p.

Research output: Contribution to journalArticle

Medicago truncatula
Metagenomics
Symbiosis
Genomics
symbiosis
Saturniidae
Comoros
Madagascar
Lepidoptera
male genitalia

Intraspecific variation in seed dispersal of a Neotropical tree and its relationship to fruit and tree traits

Augspurger, C. K., Franson, S. E., Cushman, K. C. & Muller-Landau, H. C., Feb 1 2016, In : Ecology and Evolution. 6, 4, p. 1128-1142 15 p.

Research output: Contribution to journalArticle

intraspecific variation
diaspore
seed dispersal
fruit
fruits

Investigating the Control of Chlorophyll Degradation by Genomic Correlation Mining

Ghandchi, F. P., Caetano-Anolles, G., Clough, S. J. & Ort, D. R., Sep 2016, In : PloS one. 11, 9, e0162327.

Research output: Contribution to journalArticle

Oxygenases
Chlorophyll
oxygenases
genomics
chlorophyll

Land cover influences boreal-forest fire responses to climate change: geospatial analysis of historical records from Alaska

Dash, C. B., Fraterrigo, J. M. & Hu, F. S., Oct 1 2016, In : Landscape Ecology. 31, 8, p. 1781-1793 13 p.

Research output: Contribution to journalArticle

historical record
forest fire
boreal forest
land cover
climate change

Larval preference and performance of amyelois transitella (navel orangeworm, lepidoptera: Pyralidae) in relation to the fungus aspergillus flavus

Ampt, E. A., Bush, D. S., Siegel, J. P. & Berenbaum, M. R., Feb 1 2016, In : Environmental entomology. 45, 1, p. 155-162 8 p.

Research output: Contribution to journalArticle

Amyelois transitella
Pyralidae
Aspergillus flavus
Lepidoptera
fungus

Late-Quaternary variation in C3 and C4 grass abundance in southeastern Australia as inferred from δ13C analysis: Assessing the roles of climate, pCO2, and fire

Nelson, D. M., Urban, M. A., Kershaw, A. P. & Hu, F. S., May 1 2016, In : Quaternary Science Reviews. 139, p. 67-76 10 p.

Research output: Contribution to journalArticle

grass
climate
grasses
East Africa
agricultural product

Lianas and soil nutrients predict fine-scale distribution of above-ground biomass in a tropical moist forest

Ledo, A., Illian, J. B., Schnitzer, S. A., Wright, S. J., Dalling, J. W. & Burslem, D. F. R. P., Nov 1 2016, In : Journal of Ecology. 104, 6, p. 1819-1828 10 p.

Research output: Contribution to journalArticle

lianas
aboveground biomass
soil nutrient
soil nutrients
tropical forest

Light sheet microscopy reveals more gradual light attenuation in light-green versus dark-green soybean leaves

Slattery, R. A., Grennan, A. K., Sivaguru, M., Sozzani, R. & Ort, D. R., Aug 1 2016, In : Journal of experimental botany. 67, 15, p. 4697-4709 13 p.

Research output: Contribution to journalArticle

Methyl Green
Chlorophyll
Soybeans
Microscopy
microscopy

Maintenance of biodiversity on islands

Chisholm, R. A., Fung, T., Chimalakonda, D. & O'Dwyer, J. P., Apr 27 2016, In : Proceedings of the Royal Society B: Biological Sciences. 283, 1829, 20160102.

Research output: Contribution to journalArticle

Biodiversity
Islands
Maintenance
biodiversity
species-area relationship

Manipulating photorespiration to increase plant productivity: Recent advances and perspectives for crop improvement

Betti, M., Bauwe, H., Busch, F. A., Fernie, A. R., Keech, O., Levey, M., Ort, D. R., Parry, M. A. J., Sage, R., Timm, S., Walker, B. & Weber, A. P. M., May 1 2016, In : Journal of experimental botany. 67, 10, p. 2977-2988 12 p.

Research output: Contribution to journalReview article

photorespiration
engineering
Ribulose-Bisphosphate Carboxylase
Oxygenases
Genetic Engineering

Molecular basis of off-type microsatellite markers in papaya

Fang, J., Wood, A., Chen, R. & Ming, R. R., May 1 2016, In : Euphytica. 209, 2, p. 323-339 17 p.

Research output: Contribution to journalArticle

Carica
papayas
Microsatellite Repeats
Alleles
microsatellite repeats

Mosquito screens

Berenbaum, M. R., Jun 1 2016, In : American Entomologist. 62, 2, p. 68-70 3 p.

Research output: Contribution to journalComment/debate

mosquito
Culicidae

Multiple thermo-erosional episodes during the past six millennia: Implications for the response of Arctic permafrost to climate change

Chipman, M. L., Kling, G. W., Lundstrom, C. C. & Hu, F. S., Jun 1 2016, In : Geology. 44, 6, p. 439-442 4 p.

Research output: Contribution to journalArticle

permafrost
climate change
lake
erosion
warming

Net soil-atmosphere fluxes mask patterns in gross production and consumption of nitrous oxide and methane in a managed ecosystem

Yang, W. & Silver, W. L., Mar 18 2016, In : Biogeosciences. 13, 5, p. 1705-1715 11 p.

Research output: Contribution to journalArticle

soil air
nitrous oxide
methane
atmosphere
ecosystems

Nitrogen addition does not influence pre-infection partner choice in the legume-rhizobium symbiosis

Grillo, M. A., Stinchcombe, J. R. & Heath, K. D., Oct 2016, In : American journal of botany. 103, 10, p. 1763-1770 8 p.

Research output: Contribution to journalArticle

Rhizobium
Symbiosis
rhizobacterium
symbiosis
Fabaceae

Nitrogen deposition and greenhouse gas emissions from grasslands: Uncertainties and future directions

Gomez-Casanovas, N., Hudiburg, T. W., Bernacchi, C., Parton, W. J. & Delucia, E. H., Apr 1 2016, In : Global Change Biology. 22, 4, p. 1348-1360 13 p.

Research output: Contribution to journalArticle

Gas emissions
Greenhouse gases
greenhouse gas
Nitrogen
grassland
Photosynthesis
reproductive cycle
Carbon Monoxide
Starvation
plant breeding

Paired stable isotopologues in precipitation and vapor: A case study of the amount effect within western tropical Pacific storms

Conroy, J., Noone, D., Cobb, K. M., Moerman, J. W. & Konecky, B. L., Jan 1 2016, In : Journal of Geophysical Research. 121, 7, p. 3290-3303 14 p.

Research output: Contribution to journalArticle

Precipitation (meteorology)
vapors
Isotopes
isotopes
Vapors

Palaeodata-informed modelling of large carbon losses from recent burning of boreal forests

Kelly, R., Genet, H., McGuire, A. D. & Hu, F. S., Jan 1 2016, In : Nature Climate Change. 6, 1, p. 79-82 4 p.

Research output: Contribution to journalArticle

boreal forest
carbon
modeling
climate
regime

Pastinaca erzincanensis (Apiaceae), A New Species from Eastern Turkey and Its Phylogenetic Position within Tordylieae

Menemen, Y., Kandemir, A. & Downie, S. R., Nov 2016, In : Annales Botanici Fennici. 53, 5-6, p. 373-382 10 p.

Research output: Contribution to journalArticle

Pastinaca
Apiaceae
Turkey (country)
fruit
new species

Phylogenetic evidence for a fusion of archaeal and bacterial SemiSWEETs to form eukaryotic SWEETs and identification of SWEET hexose transporters in the amphibian chytrid pathogen Batrachochytrium dendrobatidis

Hu, Y. B., Sosso, D., Qu, X. Q., Chen, L., Ma, L., Chermak, D., Zhang, D. C. & Frommer, W. B., Oct 2016, In : FASEB Journal. 30, 10, p. 3644-3654 11 p.

Research output: Contribution to journalArticle

Chytridiomycota
Monosaccharide Transport Proteins
Amphibians
Pathogens
Fungi

Phylogenetic turnover along local environmental gradients in tropical forest communities

Baldeck, C. A., Kembel, S. W., Harms, K. E., Yavitt, J. B., John, R., Turner, B. L., Madawala, S., Gunatilleke, N., Gunatilleke, S., Bunyavejchewin, S., Kiratiprayoon, S., Yaacob, A., Supardi, M. N. N., Valencia, R., Navarrete, H., Davies, S. J., Chuyong, G. B., Kenfack, D., Thomas, D. W. & Dalling, J. W., Oct 1 2016, In : Oecologia. 182, 2, p. 547-557 11 p.

Research output: Contribution to journalArticle

forest communities
environmental gradient
tropical forests
tropical forest
turnover

Physiological evidence for plasticity in glycolate/glycerate transport during photorespiration

Walker, B. J., South, P. F. & Ort, D. R., Jul 1 2016, In : Photosynthesis research. 129, 1, p. 93-103 11 p.

Research output: Contribution to journalArticle

glycolic acid
Ribulose-Bisphosphate Carboxylase
photorespiration
ribulose-bisphosphate carboxylase
Plasticity

Pineapple Genome: A Reference for Monocots and CAM Photosynthesis

Ming, R. R., Wai, C. M. & Guyot, R., Nov 1 2016, In : Trends in Genetics. 32, 11, p. 690-696 7 p.

Research output: Contribution to journalShort survey

Ananas
Bromeliaceae
Photosynthesis
Genome
Acids

Plants in silico: Why, why now and what?-an integrative platform for plant systems biology research

Zhu, X. G., Lynch, J. P., LeBauer, D. S., Millar, A. J., Stitt, M. & Long, S. P., May 1 2016, In : Plant Cell and Environment. 39, 5, p. 1049-1057 9 p.

Research output: Contribution to journalReview article

Systems Biology
Computer Simulation
Biological Sciences
Research
Ecosystem

Productivity of North American grasslands is increased under future climate scenarios despite rising aridity

Hufkens, K., Keenan, T. F., Flanagan, L. B., Scott, R. L., Bernacchi, C., Joo, E., Brunsell, N. A., Verfaillie, J. & Richardson, A. D., Jul 1 2016, In : Nature Climate Change. 6, 7, p. 710-714 5 p.

Research output: Contribution to journalArticle

aridity
productivity
grassland
climate
scenario

Reproducing static and dynamic biodiversity patterns in tropical forests: The critical role of environmental variance

Fung, T., O'Dwyer, J. P., Rahman, K. A. B. D., Fletcher, C. D. & Chisholm, R. A., May 1 2016, In : Ecology. 97, 5, p. 1207-1217 11 p.

Research output: Contribution to journalArticle

tropical forests
tropical forest
biodiversity
demographic statistics
biogeography

Rhizobia: tractable models for bacterial evolutionary ecology

Heath, K. D. & Grillo, M. A., Dec 1 2016, In : Environmental Microbiology. 18, 12, p. 4307-4311 5 p.

Research output: Contribution to journalArticle

Rhizobium
rhizobacterium
Ecology
ecology

Seedling growth responses to phosphorus reflect adult distribution patterns of tropical trees

Zalamea, P. C., Turner, B. L., Winter, K., Jones, F. A., Sarmiento, C. & Dalling, J. W., Oct 1 2016, In : The New phytologist. 212, 2, p. 400-408 9 p.

Research output: Contribution to journalArticle

Seedlings
Phosphorus
seedling growth
phosphorus
Growth

Soil nutrient removal by four potential bioenergy crops: Zea mays, Panicum virgatum, Miscanthus×giganteus, and prairie

Masters, M. D., Black, C. K., Kantola, I. B., Woli, K. P., Voigt, T. B., David, M. B. & Delucia, E. H., Jan 15 2016, In : Agriculture, Ecosystems and Environment. 216, p. 51-60 10 p.

Research output: Contribution to journalArticle

Panicum virgatum
energy crops
bioenergy
soil nutrient
prairies

Spatially Aware Dictionary Learning and Coding for Fossil Pollen Identification

Kong, S., Punyasena, S. W. & Fowlkes, C., Dec 16 2016, Proceedings - 29th IEEE Conference on Computer Vision and Pattern Recognition Workshops, CVPRW 2016. IEEE Computer Society, p. 1305-1314 10 p. 7789655. (IEEE Computer Society Conference on Computer Vision and Pattern Recognition Workshops).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Glossaries
Microscopic examination
Textures
Testing

Speaking of insects⋯

Berenbaum, M. R., Sep 23 2016, In : Science. 353, 6306, 1 p.

Research output: Contribution to journalEditorial

Biological Pest Control
Entomology
Dengue
Aedes
Insects

Structure, phylogeny, allelic haplotypes and expression of sucrose transporter gene families in Saccharum

Zhang, Q., Hu, W., Zhu, F., Wang, L., Yu, Q., Ming, R. & Zhang, J., Feb 1 2016, In : BMC genomics. 17, 1, 88.

Research output: Contribution to journalArticle

Saccharum
Phylogeny
Haplotypes
Sucrose
Genes

Techno-economic analysis of biodiesel and ethanol co-production from lipid-producing sugarcane

Huang, H., Long, S. P. & Singh, V., May 1 2016, In : Biofuels, Bioproducts and Biorefining. 10, 3, p. 299-315 17 p.

Research output: Contribution to journalArticle

Biofuels
Economic analysis
Biodiesel
Lipids
Ethanol

The Costs of Photorespiration to Food Production Now and in the Future

Walker, B. J., Vanloocke, A., Bernacchi, C. & Ort, D. R., Apr 29 2016, In : Annual Review of Plant Biology. 67, p. 107-129 23 p.

Research output: Contribution to journalReview article

photorespiration
food production
Carbon Dioxide
Costs and Cost Analysis
Food
Breeding
breeding
Forests
intraspecific variation

The influence of drought and heat stress on long-term carbon fluxes of bioenergy crops grown in the Midwestern USA

Joo, E., Hussain, M. Z., Zeri, M., Masters, M. D., Miller, J. N., Gomez-Casanovas, N., Delucia, E. H. & Bernacchi, C., Sep 1 2016, In : Plant Cell and Environment. 39, 9, p. 1928-1940 13 p.

Research output: Contribution to journalArticle

Carbon Cycle
Droughts
energy crops
Miscanthus
Ecosystem

The plastid casein kinase 2 phosphorylates rubisco activase at the Thr-78 site but is not essential for regulation of rubisco activation state

Kim, S. Y., Bender, K. W., Walker, B. J., Zielinski, R. E., Spalding, M. H., Ort, D. R. & Huber, S. C., Mar 31 2016, In : Frontiers in Plant Science. 7, MAR2016, 404.

Research output: Contribution to journalArticle

ribulose-bisphosphate carboxylase
threonine
plastids
phosphorylation
knockout mutants

The role of the Southern Hemisphere in the evolutionary history of Apiaceae, a mostly north temperate plant family

Calviño, C. I., Teruel, F. E. & Downie, S. R., Feb 1 2016, In : Journal of Biogeography. 43, 2, p. 398-409 12 p.

Research output: Contribution to journalArticle

Apiaceae
Southern Hemisphere
Australasian region
Eurasia
history

Transcriptome profiling revealed stress-induced and disease resistance genes up-regulated in PRSV resistant transgenic papaya

Fang, J., Lin, A., Qiu, W., Cai, H., Umar, M., Chen, R. & Ming, R. R., Jun 16 2016, In : Frontiers in Plant Science. 7, JUNE2016, 855.

Research output: Contribution to journalArticle

Papaya ringspot virus
induced resistance
papayas
transcriptomics
disease resistance

Two tropical conifers show strong growth and water-use efficiency responses to altered CO2 concentration

Dalling, J. W., Cernusak, L. A., Winter, K., Aranda, J., Garcia, M., Virgo, A., Cheesman, A. W., Baresch, A., Jaramillo, C. & Turner, B. L., Nov 1 2016, In : Annals of Botany. 118, 6, p. 1113-1125 13 p.

Research output: Contribution to journalArticle

conifers
water use efficiency
Podocarpus
Angiospermae
nitrates