Research Output 1975 2020

2017
Photosynthesis
Solar System
Sun
Triticum
shade

Soilborne fungi have host affinity and host-specific effects on seed germination and survival in a lowland tropical forest

Sarmiento, C., Zalamea, P. C., Dalling, J. W., Davis, A. S., Simon, S. M., U'Ren, J. M. & Arnold, A. E., Oct 24 2017, In : Proceedings of the National Academy of Sciences of the United States of America. 114, 43, p. 11458-11463 6 p.

Research output: Contribution to journalArticle

Germination
Seeds
Fungi
Seedlings
Soil

Soil environmental factors drive seed density across vegetation types on the Tibetan Plateau

Ma, M., Dalling, J. W., Ma, Z. & Zhou, X., Oct 1 2017, In : Plant and Soil. 419, 1-2, p. 349-361 13 p.

Research output: Contribution to journalArticle

seed bank
edaphic factors
buried seeds
vegetation types
vegetation type

Soil particulate organic matter increases under perennial bioenergy crop agriculture

Kantola, I. B., Masters, M. D. & Delucia, E. H., Oct 2017, In : Soil Biology and Biochemistry. 113, p. 184-191 8 p.

Research output: Contribution to journalArticle

Particulate Matter
energy crops
bioenergy
particulate organic matter
Agriculture

Soils and rainfall drive landscape-scale changes in the diversity and functional composition of tree communities in premontane tropical forest

Prada, C. M., Morris, A., Andersen, K. M., Turner, B. L., Caballero, P. & Dalling, J. W., Jul 2017, In : Journal of Vegetation Science. 28, 4, p. 859-870 12 p.

Research output: Contribution to journalArticle

tropical forests
tropical forest
rain
rainfall
ordination

Spatiotemporal variability in the δ 18 O-salinity relationship of seawater across the tropical Pacific Ocean

Conroy, J., Thompson, D. M., Cobb, K. M., Noone, D., Rea, S. & Legrande, A. N., May 1 2017, In : Paleoceanography. 32, 5, p. 484-497 14 p.

Research output: Contribution to journalArticle

seawater
salinity
ocean
water mass
carbonate

Species-abundance distributions under colored environmental noise

Fung, T., O'Dwyer, J. P. & Chisholm, R. A., Jan 1 2017, In : Journal of Mathematical Biology. 74, 1-2, p. 289-311 23 p.

Research output: Contribution to journalArticle

Noise
biogeography
Demography
Climate Change
Biodiversity

Species identity influences secondary removal of seeds of Neotropical pioneer tree species

Ruzi, S. A., Roche, D. P., Zalamea, P. C., Robison, A. C. & Dalling, J. W., Aug 1 2017, In : Plant Ecology. 218, 8, p. 983-995 13 p.

Research output: Contribution to journalArticle

pioneer species
seed
soil surface
dormancy
seeds
Saturniidae
cocoons
silk
Madagascar
mechanical properties

TAL effector driven induction of a SWEET gene confers susceptibility to bacterial blight of cotton

Cox, K. L., Meng, F., Wilkins, K. E., Li, F., Wang, P., Booher, N. J., Carpenter, S. C. D., Chen, L. Q., Zheng, H., Gao, X., Zheng, Y., Fei, Z., Yu, J. Z., Isakeit, T., Wheeler, T., Frommer, W. B., He, P., Bogdanove, A. J. & Shan, L., May 24 2017, In : Nature communications. 8, 15588.

Research output: Contribution to journalArticle

blight
effectors
cotton
Transcription
genes

Temporal and spatial transcriptomic and microRNA dynamics of CAM photosynthesis in pineapple

Wai, C. M., VanBuren, R., Zhang, J., Huang, L., Miao, W., Edger, P. P., Yim, W. C., Priest, H. D., Meyers, B. C., Mockler, T., Smith, J. A. C., Cushman, J. C. & Ming, R., Oct 2017, In : Plant Journal. 92, 1, p. 19-30 12 p.

Research output: Contribution to journalArticle

Ananas
Crassulacean acid metabolism
Photosynthesis
pineapples
MicroRNAs

The effects of seasonal and long-term climatic variability on Neotropical flowering phenology: An ecoinformatic analysis of aerial pollen data

Haselhorst, D. S., Tcheng, D. K., Moreno, J. E. & Punyasena, S. W., Sep 2017, In : Ecological Informatics. 41, p. 54-63 10 p.

Research output: Contribution to journalArticle

Pollen
Flowering
phenology
flowering
pollen
Photosynthesis
Chlorophyll
antennae
photosynthesis
canopy

The impact of species-neutral stage structure on macroecological patterns

D’Andrea, R. & O'Dwyer, J. P., Dec 1 2017, In : Theoretical Ecology. 10, 4, p. 433-442 10 p.

Research output: Contribution to journalArticle

fecundity
power law
prediction
mortality
distribution

The impact of water management practices on subtropical pasture methane emissions and ecosystem service payments

Chamberlain, S. D., Groffman, P. M., Boughton, E. H., Gomez-Casanovas, N., DeLucia, E. H., Bernacchi, C. J. & Sparks, J. P., Jun 2017, In : Ecological Applications. 27, 4, p. 1199-1209 11 p.

Research output: Contribution to journalArticle

ecosystem service
water management
management practice
pasture
methane

The importance of ENSO nonlinearities in tropical pacific response to external forcing

Karamperidou, C., Jin, F. F. & Conroy, J. L., Oct 1 2017, In : Climate Dynamics. 49, 7-8, p. 2695-2704 10 p.

Research output: Contribution to journalArticle

Southern Oscillation
nonlinearity
warming
regional climate
simulation

The Kalanchoë genome provides insights into convergent evolution and building blocks of crassulacean acid metabolism

Yang, X., Hu, R., Yin, H., Jenkins, J., Shu, S., Tang, H., Liu, D., Weighill, D. A., Cheol Yim, W., Ha, J., Heyduk, K., Goodstein, D. M., Guo, H. B., Moseley, R. C., Fitzek, E., Jawdy, S., Zhang, Z., Xie, M., Hartwell, J., Grimwood, J. & 29 others, Abraham, P. E., Mewalal, R., Beltrán, J. D., Boxall, S. F., Dever, L. V., Palla, K. J., Albion, R., Garcia, T., Mayer, J. A., Don Lim, S., Man Wai, C., Peluso, P., Van Buren, R., De Paoli, H. C., Borland, A. M., Guo, H., Chen, J. G., Muchero, W., Yin, Y., Jacobson, D. A., Tschaplinski, T. J., Hettich, R. L., Ming, R., Winter, K., Leebens-Mack, J. H., Smith, J. A. C., Cushman, J. C., Schmutz, J. & Tuskan, G. A., Dec 1 2017, In : Nature communications. 8, 1, 1899.

Research output: Contribution to journalArticle

genome
metabolism
Metabolism
Genes
Genome
Heracleum
Apiaceae
Angelica
Fruit
fruit

The pomegranate (Punica granatum L.) genome and the genomics of punicalagin biosynthesis

Qin, G., Xu, C., Ming, R. R., Tang, H., Guyot, R., Kramer, E. M., Hu, Y., Yi, X., Qi, Y., Xu, X., Gao, Z., Pan, H., Jian, J., Tian, Y., Yue, Z. & Xu, Y., Sep 2017, In : Plant Journal. 91, 6, p. 1108-1128 21 p.

Research output: Contribution to journalArticle

Punicaceae
Punica granatum
Genomics
biosynthesis
Genome

The primacy of multidecadal to centennial variability over late-Holocene forced change of the Asian Monsoon on the southern Tibetan Plateau

Conroy, J. L., Hudson, A. M., Overpeck, J. T., Liu, K. B., Wang, L. & Cole, J. E., Jan 15 2017, In : Earth and Planetary Science Letters. 458, p. 337-348 12 p.

Research output: Contribution to journalArticle

monsoons
Lakes
plateaus
monsoon
Holocene
field capacity
Nicotiana tabacum
carbon dioxide
nitrogen
photosynthesis

The social inefficiency of regulating indirect land use change due to biofuels

Khanna, M., Wang, W., Hudiburg, T. W. & Delucia, E. H., Jun 26 2017, In : Nature communications. 8, 15513.

Research output: Contribution to journalArticle

land use
Biofuels
Land use
Carbon
carbon

Time dependent genetic analysis links field and controlled environment phenotypes in the model C4grass Setaria

Feldman, M. J., Paul, R. E., Banan, D., Barrett, J. F., Sebastian, J., Yee, M. C., Jiang, H., Lipka, A. E., Brutnell, T. P., Dinneny, J. R., Leakey, A. D. B. & Baxter, I., Jan 1 2017, In : PLoS genetics. 13, 6, e1006841.

Research output: Contribution to journalArticle

Setaria (Poaceae)
Controlled Environment
genetic analysis
genetic techniques and protocols
phenotype

Transcriptome dynamics of Camellia sinensis in response to continuous salinity and drought stress

Zhang, Q., Cai, M., Yu, X., Wang, L., Guo, C., Ming, R. & Zhang, J., Aug 1 2017, In : Tree Genetics and Genomes. 13, 4, 78.

Research output: Contribution to journalArticle

Camellia sinensis
Droughts
drought stress
Salinity
Transcriptome

Trees harness the power of microbes to survive climate change

Lau, J. A., Lennon, J. T. & Heath, K. D., Oct 17 2017, In : Proceedings of the National Academy of Sciences of the United States of America. 114, 42, p. 11009-11011 3 p.

Research output: Contribution to journalComment/debate

Tropical Pacific climate variability over the last 6000 years as recorded in Bainbridge Crater Lake, Galápagos

Thompson, D. M., Conroy, J. L., Collins, A., Hlohowskyj, S. R., Overpeck, J. T., Riedinger-Whitmore, M., Cole, J. E., Bush, M. B., Whitney, H., Corley, T. L. & Kannan, M. S., Aug 2017, In : Paleoceanography. 32, 8, p. 903-922 20 p.

Research output: Contribution to journalArticle

crater lake
oscillation
temperature gradient
sea surface temperature
climate

Tyrosine-610 in the receptor kinase BAK1 does not play a major role in brassinosteroid signaling or innate immunity

Singh, V., Perraki, A., Kim, S. Y., Shrivastava, S., Lee, J. H., Zhao, Y., Schwessinger, B., Oh, M. H., Marshall-Colon, A., Zipfel, C. & Huber, S. C., Aug 2 2017, In : Frontiers in Plant Science. 8, 1273.

Research output: Contribution to journalArticle

brassinosteroids
tyrosine
phosphotransferases (kinases)
receptors
flagellin

Uncertainty in measurements of the photorespiratory CO2 compensation point and its impact on models of leaf photosynthesis

Walker, B. J., Orr, D. J., Carmo-Silva, E., Parry, M. A. J., Bernacchi, C. J. & Ort, D. R., Jun 1 2017, In : Photosynthesis research. 132, 3, p. 245-255 11 p.

Research output: Contribution to journalArticle

Photosynthesis
Ribulose-Bisphosphate Carboxylase
Uncertainty
uncertainty
carbon dioxide

Understanding and improving global crop response to ozone pollution

Ainsworth, E., Jun 2017, In : Plant Journal. 90, 5, p. 886-897 12 p.

Research output: Contribution to journalArticle

Quantitative Trait Loci
Ozone
ozone
pollution
Air Pollutants

Wind dispersal is predicted by tree, not diaspore, traits in comparisons of Neotropical species

Augspurger, C. K., Franson, S. E. & Cushman, K. C., Apr 1 2017, In : Functional Ecology. 31, 4, p. 808-820 13 p.

Research output: Contribution to journalArticle

diaspore
seeds
seed
seedling
air

Yakety Yak

Berenbaum, M. R., Dec 1 2017, In : American Entomologist. 63, 4, p. 205-207 3 p.

Research output: Contribution to journalComment/debate

yaks
2016

A consuming passion for entomophagy

Berenbaum, M. R., Jan 1 2016, In : American Entomologist. 62, 3, p. 140-142 3 p.

Research output: Contribution to journalComment/debate

Alteration of forest succession and carbon cycling under elevated CO2

Miller, A. D., Dietze, M. C., Delucia, E. H. & Anderson-Teixeira, K. J., Jan 1 2016, In : Global change biology. 22, 1, p. 351-363 13 p.

Research output: Contribution to journalArticle

Ecosystems
Carbon
carbon
Carbon Dioxide
Biomass

Analysis of Alternative Splicing Landscape in Pineapple (Ananas comosus)

Wai, C. M., Powell, B., Ming, R. & Min, X. J., Sep 1 2016, In : Tropical Plant Biology. 9, 3, p. 150-160 11 p.

Research output: Contribution to journalArticle

Ananas
Ananas comosus
alternative splicing
Alternative Splicing
pineapples

Analysis of the mitochondrial genome in Hypomyces aurantius reveals a novel twintron complex in fungi

Deng, Y., Zhang, Q., Ming, R., Lin, L., Lin, X., Lin, Y., Li, X., Xie, B. & Wen, Z., Jul 2016, In : International journal of molecular sciences. 17, 7, 1049.

Research output: Contribution to journalArticle

Mitochondrial Genome
fungi
genome
Fungi
genes

An ectomycorrhizal nitrogen economy facilitates monodominance in a neotropical forest

Corrales, A., Mangan, S. A., Turner, B. L. & Dalling, J. W., Apr 1 2016, In : Ecology Letters. 19, 4, p. 383-392 10 p.

Research output: Contribution to journalLetter

tropical forests
nitrogen
tropical forest
soil
nitrates

An evaluation of new and established methods to determine T-DNA copy number and homozygosity in transgenic plants

Głowacka, K., Kromdijk, J., Leonelli, L., Niyogi, K. K., Clemente, T. E. & Long, S. P., Apr 1 2016, In : Plant Cell and Environment. 39, 4, p. 908-917 10 p.

Research output: Contribution to journalArticle

Genetically Modified Plants
Southern Blotting
homozygosity
Southern blotting
transgenic plants

An improved approach for measuring the impact of multiple CO2 conductances on the apparent photorespiratory CO2 compensation point through slope-intercept regression

Walker, B. J., Skabelund, D. C., Busch, F. A. & Ort, D. R., Jun 1 2016, In : Plant Cell and Environment. 39, 6, p. 1198-1203 6 p.

Research output: Contribution to journalArticle

Photosynthesis
photosynthesis
Ribulose-Bisphosphate Carboxylase
ribulose 1,5-diphosphate
ribulose-bisphosphate carboxylase

A taxonomic study of the genus Hellenocarum H. Wolff (Umbelliferae-apioideae) based on morphology, fruit anatomy, and molecular data

Zakharova, E. A., Kljuykov, E. V., Degtjareva, G. V., Samigullin, T. H., Ukrainskaya, U. A. & Downie, S. R., Jan 1 2016, In : Turkish Journal of Botany. 40, 2, p. 176-193 18 p.

Research output: Contribution to journalArticle

Apiaceae
intergenic DNA
fruits
Carum
herbaria

Balancing selection contributed to domestication of autopolyploid sugarcane (Saccharum officinarum L.)

Arro, J., Park, J. W., Wai, C. M., VanBuren, R., Pan, Y. B., Nagai, C., da Silva, J. & Ming, R. R., May 1 2016, In : Euphytica. 209, 2, p. 477-493 17 p.

Research output: Contribution to journalArticle

autopolyploidy
Saccharum
Saccharum officinarum
domestication
sugarcane

Biomass feedstock preprocessing and long-distance transportation logistics

Lin, T., Rodríguez, L. F., Davis, S., Khanna, M., Shastri, Y., Grift, T., Long, S. & Ting, K. C., Jan 1 2016, In : GCB Bioenergy. 8, 1, p. 160-170 11 p.

Research output: Contribution to journalArticle

feedstocks
Feedstocks
Logistics
logistics
Biomass

Biomass offsets little or none of permafrost carbon release from soils, streams, and wildfire: An expert assessment

Abbott, B. W., Jones, J. B., Schuur, E. A. G., Chapin, F. S., Bowden, W. B., Bret-Harte, M. S., Epstein, H. E., Flannigan, M. D., Harms, T. K., Hollingsworth, T. N., Mack, M. C., McGuire, A. D., Natali, S. M., Rocha, A. V., Tank, S. E., Turetsky, M. R., Vonk, J. E., Wickland, K. P., Aiken, G. R., Alexander, H. D. & 80 others, Amon, R. M. W., Benscoter, B. W., Bergeron, Y., Bishop, K., Blarquez, O., Bond-Lamberty, B., Breen, A. L., Buffam, I., Cai, Y., Carcaillet, C., Carey, S. K., Chen, J. M., Chen, H. Y. H., Christensen, T. R., Cooper, L. W., Cornelissen, J. H. C., De Groot, W. J., Deluca, T. H., Dorrepaal, E., Fetcher, N., Finlay, J. C., Forbes, B. C., French, N. H. F., Gauthier, S., Girardin, M. P., Goetz, S. J., Goldammer, J. G., Gough, L., Grogan, P., Guo, L., Higuera, P. E., Hinzman, L., Hu, F. S., Hugelius, G., Jafarov, E. E., Jandt, R., Johnstone, J. F., Karlsson, J., Kasischke, E. S., Kattner, G., Kelly, R., Keuper, F., Kling, G. W., Kortelainen, P., Kouki, J., Kuhry, P., Laudon, H., Laurion, I., MacDonald, R. W., Mann, P. J., Martikainen, P. J., McClelland, J. W., Molau, U., Oberbauer, S. F., Olefeldt, D., Paré, D., Parisien, M. A., Payette, S., Peng, C., Pokrovsky, O. S., Rastetter, E. B., Raymond, P. A., Raynolds, M. K., Rein, G., Reynolds, J. F., Robards, M., Rogers, B. M., Schdel, C., Schaefer, K., Schmidt, I. K., Shvidenko, A., Sky, J., Spencer, R. G. M., Starr, G., Striegl, R. G., Teisserenc, R., Tranvik, L. J., Virtanen, T., Welker, J. M. & Zimov, S., Mar 7 2016, In : Environmental Research Letters. 11, 3, 034014.

Research output: Contribution to journalArticle

Permafrost
wildfire
permafrost
Biomass
Soil

Can chilling tolerance of C4 photosynthesis in Miscanthus be transferred to sugarcane?

Glowacka, K., Ahmed, A., Sharma, S., Abbott, T., Comstock, J. C., Long, S. P. & Sacks, E. J., Mar 1 2016, In : GCB Bioenergy. 8, 2, p. 407-418 12 p.

Research output: Contribution to journalArticle

Chilling
C4 photosynthesis
Miscanthus
Photosynthesis
cold tolerance

Candidate perennial bioenergy grasses have a higher albedo than annual row crops

Miller, J. N., VanLoocke, A., Gomez-Casanovas, N. & Bernacchi, C. J., Jul 1 2016, In : GCB Bioenergy. 8, 4, p. 818-825 8 p.

Research output: Contribution to journalArticle

bioenergy
Crops
albedo
grass
grasses

Canopy position has a profound effect on soybean seed composition

Huber, S. C., Li, K., Nelson, R., Ulanov, A., DeMuro, C. M. & Baxter, I., Jan 1 2016, In : PeerJ. 2016, 9, e2452.

Research output: Contribution to journalArticle

Soybeans
Seed
Seeds
canopy
soybeans

Carbon Flux and Carbohydrate Gene Families in Pineapple

Paull, R. E., Chen, N. J., Ming, R. R., Wai, C. M., Shirley, N., Schwerdt, J. & Bulone, V., Sep 1 2016, In : Tropical Plant Biology. 9, 3, p. 200-213 14 p.

Research output: Contribution to journalArticle

Ananas
Carbon Cycle
pineapples
Carbohydrates
carbohydrates

Carbon isotope analyses reveal relatively high abundance of C4 grasses during early-middle Miocene in southwestern Europe

Urban, M. A., Nelson, D. M., Jiménez-Moreno, G. & Hu, F. S., Feb 1 2016, In : Palaeogeography, Palaeoclimatology, Palaeoecology. 443, p. 10-17 8 p.

Research output: Contribution to journalArticle

carbon isotope
isotopes
Miocene
grass
grasses

Chance the wrapper

Berenbaum, M. R., Dec 1 2016, In : American Entomologist. 62, 4, p. 203-205 3 p.

Research output: Contribution to journalComment/debate

Photosynthesis
Ozone
Soybeans
Nitrogen
Light

Climate modifies response of non-native and native species richness to nutrient enrichment

Flores-Moreno, H., Reich, P. B., Lind, E. M., Sullivan, L. L., Seabloom, E. W., Yahdjian, L., MacDougall, A. S., Reichmann, L. G., Alberti, J., Báez, S., Bakker, J. D., Cadotte, M. W., Caldeira, M. C., Chaneton, E. J., D’Antonio, C. M., Fay, P. A., Firn, J., Hagenah, N., Harpole, W. S., Iribarne, O. & 9 others, Kirkman, K. P., Knops, J. M. H., La Pierre, K. J., Laungani, R., Leakey, A. D. B., McCulley, R. L., Moore, J. L., Pascual, J. & Borer, E. T., May 19 2016, In : Philosophical Transactions of the Royal Society B: Biological Sciences. 371, 1694, 20150273.

Research output: Contribution to journalArticle

Climate
Nutrients
eutrophication
indigenous species
climate