Research Output 1971 2019

2017

Photosynthesis, light use efficiency, and yield of reduced-chlorophyll soybean mutants in field conditions

Slattery, R. A., Vanloocke, A., Bernacchi, C., Zhu, X. G. & Ort, D. R., Apr 18 2017, In : Frontiers in Plant Science. 8, 549.

Research output: Contribution to journalArticle

photosynthesis
soybeans
chlorophyll
mutants
growing season

Physiological and transcriptomic responses in the seed coat of field-grown soybean (Glycine max L. Merr.) to abiotic stress

Leisner, C. P., Yendrek, C. R. & Ainsworth, E., Dec 12 2017, In : BMC Plant Biology. 17, 1, 242.

Research output: Contribution to journalArticle

transcriptomics
abiotic stress
Glycine max
soybeans
drought

Pins and needles

Berenbaum, M. R., Jun 1 2017, In : American Entomologist. 63, 2, p. 67-69 3 p.

Research output: Contribution to journalArticle

pins

Potential of global croplands and bioenergy crops for climate change mitigation through deployment for enhanced weathering

Kantola, I. B., Masters, M. D., Beerling, D. J., Long, S. P. & Delucia, E. H., Apr 1 2017, In : Biology Letters. 13, 4, 0714.

Research output: Contribution to journalReview article

Climate Change
energy crops
weathering
Soil
carbon dioxide
Luehea seemannii
seed dormancy
dormancy
seed dispersal
germination

Recycling Carbon Dioxide during Xylose Fermentation by Engineered Saccharomyces cerevisiae

Xia, P. F., Zhang, G. C., Walker, B., Seo, S. O., Kwak, S., Liu, J. J., Kim, H., Ort, D. R., Wang, S. G. & Jin, Y-S., Feb 17 2017, In : ACS synthetic biology. 6, 2, p. 276-283 8 p.

Research output: Contribution to journalArticle

Xylose
Recycling
Pentoses
Carbon Dioxide
Pentose Phosphate Pathway

Reinterpreting maximum entropy in ecology: a null hypothesis constrained by ecological mechanism

O'Dwyer, J. P., Rominger, A. & Xiao, X., Jul 2017, In : Ecology Letters. 20, 7, p. 832-841 10 p.

Research output: Contribution to journalArticle

entropy
ecology
mechanistic models
prediction
statistics

Rooting for cassava: insights into photosynthesis and associated physiology as a route to improve yield potential

De Souza, A. P., Massenburg, L. N., Jaiswal, D., Cheng, S., Shekar, R. & Long, S. P., Jan 1 2017, In : New Phytologist. 213, 1, p. 50-65 16 p.

Research output: Contribution to journalReview article

Manihot
Photosynthesis
cassava
rooting
physiology

Root volume distribution of maturing perennial grasses revealed by correcting for minirhizotron surface effects

Black, C. K., Masters, M. D., LeBauer, D. S., Anderson-Teixeira, K. J. & Delucia, E. H., Oct 1 2017, In : Plant and Soil. 419, 1-2, p. 391-404 14 p.

Research output: Contribution to journalArticle

grass
grasses
maize
bioenergy
root system

Scientific pronouncements

Berenbaum, M. R., Jan 1 2017, In : American Entomologist. 63, 3, p. 140-142 3 p.

Research output: Contribution to journalArticle

Season-long ammonia flux measurements above fertilized corn in central Illinois, USA, using relaxed eddy accumulation

Nelson, A. J., Koloutsou-Vakakis, S., Rood, M. J., Myles, L. T., Lehmann, C. MB., Bernacchi, C., Balasubramanian, S., Joo, E., Heuer, M., Vieira-Filho, M. & Lin, J., May 28 2017, In : Agricultural and Forest Meteorology. 239, p. 202-212 11 p.

Research output: Contribution to journalArticle

flux measurement
eddy
ammonia
maize
agricultural ecosystem

Shifts in microbial communities in soil, rhizosphere and roots of two major crop systems under elevated CO2 and O3

Wang, P., Marsh, E. L., Ainsworth, E. A., Leakey, A. D. B., Sheflin, A. M. & Schachtman, D. P., Dec 1 2017, In : Scientific reports. 7, 1, 15019.

Research output: Contribution to journalArticle

microbial communities
rhizosphere
corn
root exudates
crops

Simulated heat waves during maize reproductive stages alter reproductive growth but have no lasting effect when applied during vegetative stages

Siebers, M. H., Slattery, R. A., Yendrek, C. R., Locke, A. M., Drag, D., Ainsworth, E., Bernacchi, C. & Ort, D. R., Mar 1 2017, In : Agriculture, Ecosystems and Environment. 240, p. 162-170 9 p.

Research output: Contribution to journalArticle

vegetative growth
maize
heat
corn
biomass
Photosynthesis
Solar System
Sun
Triticum
shade

Soilborne fungi have host affinity and host-specific effects on seed germination and survival in a lowland tropical forest

Sarmiento, C., Zalamea, P. C., Dalling, J. W., Davis, A. S., Simon, S. M., U'Ren, J. M. & Arnold, A. E., Oct 24 2017, In : Proceedings of the National Academy of Sciences of the United States of America. 114, 43, p. 11458-11463 6 p.

Research output: Contribution to journalArticle

Germination
Seeds
Fungi
Seedlings
Soil

Soil environmental factors drive seed density across vegetation types on the Tibetan Plateau

Ma, M., Dalling, J. W., Ma, Z. & Zhou, X., Oct 1 2017, In : Plant and Soil. 419, 1-2, p. 349-361 13 p.

Research output: Contribution to journalArticle

seed bank
edaphic factors
buried seeds
vegetation types
vegetation type

Soil particulate organic matter increases under perennial bioenergy crop agriculture

Kantola, I. B., Masters, M. D. & Delucia, E. H., Oct 2017, In : Soil Biology and Biochemistry. 113, p. 184-191 8 p.

Research output: Contribution to journalArticle

Particulate Matter
energy crops
bioenergy
particulate organic matter
Agriculture

Soils and rainfall drive landscape-scale changes in the diversity and functional composition of tree communities in premontane tropical forest

Prada, C. M., Morris, A., Andersen, K. M., Turner, B. L., Caballero, P. & Dalling, J. W., Jul 2017, In : Journal of Vegetation Science. 28, 4, p. 859-870 12 p.

Research output: Contribution to journalArticle

tropical forests
tropical forest
rain
rainfall
ordination

Spatiotemporal variability in the δ 18 O-salinity relationship of seawater across the tropical Pacific Ocean

Conroy, J., Thompson, D. M., Cobb, K. M., Noone, D., Rea, S. & Legrande, A. N., May 1 2017, In : Paleoceanography. 32, 5, p. 484-497 14 p.

Research output: Contribution to journalArticle

seawater
salinity
ocean
water mass
carbonate

Species-abundance distributions under colored environmental noise

Fung, T., O'Dwyer, J. P. & Chisholm, R. A., Jan 1 2017, In : Journal of Mathematical Biology. 74, 1-2, p. 289-311 23 p.

Research output: Contribution to journalArticle

Noise
biogeography
Demography
Climate Change
Biodiversity

Species identity influences secondary removal of seeds of Neotropical pioneer tree species

Ruzi, S. A., Roche, D. P., Zalamea, P. C., Robison, A. C. & Dalling, J. W., Aug 1 2017, In : Plant Ecology. 218, 8, p. 983-995 13 p.

Research output: Contribution to journalArticle

pioneer species
seed
soil surface
dormancy
seeds
Saturniidae
cocoons
silk
Madagascar
mechanical properties

TAL effector driven induction of a SWEET gene confers susceptibility to bacterial blight of cotton

Cox, K. L., Meng, F., Wilkins, K. E., Li, F., Wang, P., Booher, N. J., Carpenter, S. C. D., Chen, L., Zheng, H., Gao, X., Zheng, Y., Fei, Z., Yu, J. Z., Isakeit, T., Wheeler, T., Frommer, W. B., He, P., Bogdanove, A. J. & Shan, L., May 24 2017, In : Nature communications. 8, 15588.

Research output: Contribution to journalArticle

blight
effectors
cotton
Transcription
genes

Temporal and spatial transcriptomic and microRNA dynamics of CAM photosynthesis in pineapple

Wai, C. M., VanBuren, R., Zhang, J., Huang, L., Miao, W., Edger, P. P., Yim, W. C., Priest, H. D., Meyers, B. C., Mockler, T., Smith, J. A. C., Cushman, J. C. & Ming, R. R., Oct 2017, In : Plant Journal. 92, 1, p. 19-30 12 p.

Research output: Contribution to journalArticle

Ananas
Crassulacean acid metabolism
Photosynthesis
pineapples
MicroRNAs

The effects of seasonal and long-term climatic variability on Neotropical flowering phenology: An ecoinformatic analysis of aerial pollen data

Haselhorst, D. S., Tcheng, D. K., Moreno, J. E. & Punyasena, S. W., Sep 2017, In : Ecological Informatics. 41, p. 54-63 10 p.

Research output: Contribution to journalArticle

Pollen
Flowering
phenology
flowering
pollen
Photosynthesis
Chlorophyll
antennae
photosynthesis
canopy

The impact of species-neutral stage structure on macroecological patterns

D’Andrea, R. & O'Dwyer, J. P., Dec 1 2017, In : Theoretical Ecology. 10, 4, p. 433-442 10 p.

Research output: Contribution to journalArticle

fecundity
power law
prediction
mortality
distribution

The impact of water management practices on subtropical pasture methane emissions and ecosystem service payments

Chamberlain, S. D., Groffman, P. M., Boughton, E. H., Gomez-Casanovas, N., Delucia, E. H., Bernacchi, C. & Sparks, J. P., Jun 2017, In : Ecological Applications. 27, 4, p. 1199-1209 11 p.

Research output: Contribution to journalArticle

ecosystem service
water management
management practice
pasture
methane

The importance of ENSO nonlinearities in tropical pacific response to external forcing

Karamperidou, C., Jin, F. F. & Conroy, J., Oct 1 2017, In : Climate Dynamics. 49, 7-8, p. 2695-2704 10 p.

Research output: Contribution to journalArticle

Southern Oscillation
nonlinearity
warming
regional climate
simulation

The Kalanchoë genome provides insights into convergent evolution and building blocks of crassulacean acid metabolism

Yang, X., Hu, R., Yin, H., Jenkins, J., Shu, S., Tang, H., Liu, D., Weighill, D. A., Cheol Yim, W., Ha, J., Heyduk, K., Goodstein, D. M., Guo, H. B., Moseley, R. C., Fitzek, E., Jawdy, S., Zhang, Z., Xie, M., Hartwell, J., Grimwood, J. & 29 others, Abraham, P. E., Mewalal, R., Beltrán, J. D., Boxall, S. F., Dever, L. V., Palla, K. J., Albion, R., Garcia, T., Mayer, J. A., Don Lim, S., Man Wai, C., Peluso, P., Van Buren, R., De Paoli, H. C., Borland, A. M., Guo, H., Chen, J. G., Muchero, W., Yin, Y., Jacobson, D. A., Tschaplinski, T. J., Hettich, R. L., Ming, R. R., Winter, K., Leebens-Mack, J. H., Smith, J. A. C., Cushman, J. C., Schmutz, J. & Tuskan, G. A., Dec 1 2017, In : Nature communications. 8, 1, 1899.

Research output: Contribution to journalArticle

genome
metabolism
Metabolism
Genes
Genome
Heracleum
Apiaceae
Angelica
Fruit
fruit

The pomegranate (Punica granatum L.) genome and the genomics of punicalagin biosynthesis

Qin, G., Xu, C., Ming, R. R., Tang, H., Guyot, R., Kramer, E. M., Hu, Y., Yi, X., Qi, Y., Xu, X., Gao, Z., Pan, H., Jian, J., Tian, Y., Yue, Z. & Xu, Y., Sep 2017, In : Plant Journal. 91, 6, p. 1108-1128 21 p.

Research output: Contribution to journalArticle

Punicaceae
Punica granatum
Genomics
biosynthesis
Genome

The primacy of multidecadal to centennial variability over late-Holocene forced change of the Asian Monsoon on the southern Tibetan Plateau

Conroy, J., Hudson, A. M., Overpeck, J. T., Liu, K. B., Wang, L. & Cole, J. E., Jan 15 2017, In : Earth and Planetary Science Letters. 458, p. 337-348 12 p.

Research output: Contribution to journalArticle

monsoons
Lakes
plateaus
monsoon
Holocene
field capacity
Nicotiana tabacum
carbon dioxide
nitrogen
photosynthesis

The social inefficiency of regulating indirect land use change due to biofuels

Khanna, M., Wang, W., Hudiburg, T. W. & Delucia, E. H., Jun 26 2017, In : Nature communications. 8, 15513.

Research output: Contribution to journalArticle

land use
Biofuels
Land use
Carbon
carbon

Time dependent genetic analysis links field and controlled environment phenotypes in the model C4grass Setaria

Feldman, M. J., Paul, R. E., Banan, D., Barrett, J. F., Sebastian, J., Yee, M. C., Jiang, H., Lipka, A. E., Brutnell, T. P., Dinneny, J. R., Leakey, A. & Baxter, I., Jan 1 2017, In : PLoS genetics. 13, 6, e1006841.

Research output: Contribution to journalArticle

Setaria (Poaceae)
Controlled Environment
genetic analysis
genetic techniques and protocols
phenotype

Transcriptome dynamics of Camellia sinensis in response to continuous salinity and drought stress

Zhang, Q., Cai, M., Yu, X., Wang, L., Guo, C., Ming, R. R. & Zhang, J., Aug 1 2017, In : Tree Genetics and Genomes. 13, 4, 78.

Research output: Contribution to journalArticle

Camellia sinensis
Droughts
drought stress
Salinity
Transcriptome

Trees harness the power of microbes to survive climate change

Lau, J. A., Lennon, J. T. & Heath, K. D., Oct 17 2017, In : Proceedings of the National Academy of Sciences of the United States of America. 114, 42, p. 11009-11011 3 p.

Research output: Contribution to journalComment/debate

Tropical Pacific climate variability over the last 6000 years as recorded in Bainbridge Crater Lake, Galápagos

Thompson, D. M., Conroy, J., Collins, A., Hlohowskyj, S. R., Overpeck, J. T., Riedinger-Whitmore, M., Cole, J. E., Bush, M. B., Whitney, H., Corley, T. L. & Kannan, M. S., Aug 2017, In : Paleoceanography. 32, 8, p. 903-922 20 p.

Research output: Contribution to journalArticle

crater lake
oscillation
temperature gradient
sea surface temperature
climate

Tyrosine-610 in the receptor kinase BAK1 does not play a major role in brassinosteroid signaling or innate immunity

Singh, V., Perraki, A., Kim, S. Y., Shrivastava, S., Lee, J. H., Zhao, Y., Schwessinger, B., Oh, M. H., Marshall-Colon, A., Zipfel, C. & Huber, S. C., Aug 2 2017, In : Frontiers in Plant Science. 8, 1273.

Research output: Contribution to journalArticle

brassinosteroids
tyrosine
phosphotransferases (kinases)
receptors
flagellin

Uncertainty in measurements of the photorespiratory CO2 compensation point and its impact on models of leaf photosynthesis

Walker, B. J., Orr, D. J., Carmo-Silva, E., Parry, M. A. J., Bernacchi, C. J. & Ort, D. R., Jun 1 2017, In : Photosynthesis research. 132, 3, p. 245-255 11 p.

Research output: Contribution to journalArticle

Photosynthesis
Ribulose-Bisphosphate Carboxylase
Uncertainty
uncertainty
carbon dioxide

Understanding and improving global crop response to ozone pollution

Ainsworth, E., Jun 2017, In : Plant Journal. 90, 5, p. 886-897 12 p.

Research output: Contribution to journalArticle

Quantitative Trait Loci
Ozone
ozone
pollution
Air Pollutants

Wind dispersal is predicted by tree, not diaspore, traits in comparisons of Neotropical species

Augspurger, C. K., Franson, S. E. & Cushman, K. C., Apr 1 2017, In : Functional Ecology. 31, 4, p. 808-820 13 p.

Research output: Contribution to journalArticle

diaspore
seeds
seed
seedling
air

Yakety Yak

Berenbaum, M. R., Dec 1 2017, In : American Entomologist. 63, 4, p. 205-207 3 p.

Research output: Contribution to journalComment/debate

yaks
2016

A consuming passion for entomophagy

Berenbaum, M. R., Jan 1 2016, In : American Entomologist. 62, 3, p. 140-142 3 p.

Research output: Contribution to journalComment/debate

Alteration of forest succession and carbon cycling under elevated CO2

Miller, A. D., Dietze, M. C., Delucia, E. H. & Anderson-Teixeira, K. J., Jan 1 2016, In : Global change biology. 22, 1, p. 351-363 13 p.

Research output: Contribution to journalArticle

Ecosystems
Carbon
carbon
Carbon Dioxide
Biomass

Analysis of Alternative Splicing Landscape in Pineapple (Ananas comosus)

Wai, C. M., Powell, B., Ming, R. R. & Min, X. J., Sep 1 2016, In : Tropical Plant Biology. 9, 3, p. 150-160 11 p.

Research output: Contribution to journalArticle

Ananas
Ananas comosus
alternative splicing
Alternative Splicing
pineapples

Analysis of the mitochondrial genome in Hypomyces aurantius reveals a novel twintron complex in fungi

Deng, Y., Zhang, Q., Ming, R. R., Lin, L., Lin, X., Lin, Y., Li, X., Xie, B. & Wen, Z., Jul 2016, In : International journal of molecular sciences. 17, 7, 1049.

Research output: Contribution to journalArticle

Mitochondrial Genome
fungi
genome
Fungi
genes

An ectomycorrhizal nitrogen economy facilitates monodominance in a neotropical forest

Corrales, A., Mangan, S. A., Turner, B. L. & Dalling, J. W., Apr 1 2016, In : Ecology Letters. 19, 4, p. 383-392 10 p.

Research output: Contribution to journalLetter

tropical forests
nitrogen
tropical forest
soil
nitrates

An evaluation of new and established methods to determine T-DNA copy number and homozygosity in transgenic plants

Głowacka, K., Kromdijk, J., Leonelli, L., Niyogi, K. K., Clemente, T. E. & Long, S. P., Apr 1 2016, In : Plant Cell and Environment. 39, 4, p. 908-917 10 p.

Research output: Contribution to journalArticle

Genetically Modified Plants
Southern Blotting
homozygosity
Southern blotting
transgenic plants