Research Output 1975 2020

2018

Transcriptomic analysis of transgressive segregants revealed the central role of photosynthetic capacity and efficiency in biomass accumulation in sugarcane

Singh, R., Jones, T., Wai, C. M., Jifon, J., Nagai, C., Ming, R. & Yu, Q., Dec 1 2018, In : Scientific reports. 8, 1, 4415.

Research output: Contribution to journalArticle

transcriptomics
sugarcane
biomass production
biomass
energy

Translucent windows: how uncertainty in competitive interactions impacts detection of community pattern

D'Andrea, R., Ostling, A. & O'Dwyer, J. P., Jun 2018, In : Ecology Letters. 21, 6, p. 826-835 10 p.

Research output: Contribution to journalLetter

niche
niches
uncertainty
interspecific competition
natural history

Try Tri again? Resolving species boundaries in the Lomatium triternatum (Apiaceae) complex

Smith, J. F., Mansfield, D. H., Stevens, M., Sosa, E., Feist, M. A. E., Downie, S. R., Plunkett, G. M. & Darrach, M., May 2018, In : Journal of Systematics and Evolution. 56, 3, p. 218-230 13 p.

Research output: Contribution to journalArticle

Lomatium
Apiaceae
phylogeny
species concept
niches

Tundra landform and vegetation productivity trend maps for the arctic coastal plain of Northern Alaska

Lara, M. J., Nitze, I., Grosse, G. & David McGuire, A., Apr 10 2018, In : Scientific Data. 5, 180058.

Research output: Contribution to journalArticle

Open Access
Geomorphology
Landforms
Hydrology
Vegetation
Arctic
Food Supply
Technology
Agriculture
Climate
Research Personnel

Using phylogenetic analysis to investigate Eukaryotic gene origin

Zhang, D., Kan, X., Huss, S. E., Jiang, L., Chen, L. Q. & Hu, Y., Aug 14 2018, In : Journal of Visualized Experiments. 2018, 138, e56684.

Research output: Contribution to journalArticle

Eukaryota
Amino Acid Sequence
Archaeal Genes
Genes
Sugars

Variable selection in omics data: A practical evaluation of small sample sizes

Kirpich, A., Ainsworth, E. A., Wedow, J. M., Newman, J. R. B., Michailidis, G. & McIntyre, L. M., Jun 2018, In : PloS one. 13, 6, e0197910.

Research output: Contribution to journalArticle

Analysis of variance (ANOVA)
Sample Size
Analysis of Variance
analysis of variance
Biomarkers

Whence Lotka-Volterra? Conservation laws and integrable systems in ecology

O'Dwyer, J. P., Apr 24 2018, (Accepted/In press) In : Theoretical Ecology. p. 1-12 12 p.

Research output: Contribution to journalArticle

ecology
resource
intraspecific competition
growth modeling
interspecific competition

Wood decomposition in aquatic and terrestrial ecosystems in the tropics: Contrasting biotic and abiotic processes

Jones, J. M., Heath, K. D., Ferrer, A., Brown, S. P., Canam, T. & Dalling, J. W., Nov 18 2018, In : FEMS microbiology ecology. 95, 1, fiy223.

Research output: Contribution to journalArticle

terrestrial ecosystem
aquatic ecosystem
Ecosystem
decomposition
habitat
2017

A comparative genome analysis of Cercospora sojina with other members of the pathogen genus Mycosphaerella on different plant hosts

Zeng, F., Lian, X., Zhang, G., Yu, X., Bradley, C. A. & Ming, R., Sep 2017, In : Genomics Data. 13, p. 54-63 10 p.

Research output: Contribution to journalArticle

Pathogens
Genes
Genome
Fungi
Virulence

Allosteric Control of a Plant Receptor Kinase through S-Glutathionylation

Moffett, A. S., Bender, K. W., Huber, S. C. & Shukla, D., Dec 5 2017, In : Biophysical journal. 113, 11, p. 2354-2363 10 p.

Research output: Contribution to journalArticle

Protein S
Protein Kinases
Oxidation-Reduction
Phosphotransferases
Brassinosteroids

A morphometric analysis of vegetation patterns in dryland ecosystems

Mander, L., Dekker, S. C., Li, M., Mio, W., Punyasena, S. & Lenton, T. M., Feb 15 2017, In : Royal Society Open Science. 4, 2, 60443.

Research output: Contribution to journalArticle

ecosystem
vegetation
analysis
terminology
pollen

A realistic meteorological assessment of perennial biofuel crop deployment: a Southern Great Plains perspective

Wagner, M., Wang, M., Miguez-Macho, G., Miller, J., VanLoocke, A., Bagley, J. E., Bernacchi, C. J. & Georgescu, M., Jun 2017, In : GCB Bioenergy. 9, 6, p. 1024-1041 18 p.

Research output: Contribution to journalArticle

energy crops
Biofuels
biofuel
bioenergy
Crops

A roadmap for improving the representation of photosynthesis in Earth system models

Rogers, A., Medlyn, B. E., Dukes, J. S., Bonan, G., von Caemmerer, S., Dietze, M. C., Kattge, J., Leakey, A. D. B., Mercado, L. M., Niinemets, Ü., Prentice, I. C., Serbin, S. P., Sitch, S., Way, D. A. & Zaehle, S., Jan 1 2017, In : New Phytologist. 213, 1, p. 22-42 21 p.

Research output: Contribution to journalComment/debate

Photosynthesis
photosynthesis
Physiological Phenomena
Vapor Pressure
Carbon Cycle

Assessing the potential to decrease the Gulf of Mexico hypoxic zone with Midwest US perennial cellulosic feedstock production

VanLoocke, A., Twine, T. E., Kucharik, C. J. & Bernacchi, C. J., May 1 2017, In : GCB Bioenergy. 9, 5, p. 858-875 18 p.

Research output: Contribution to journalArticle

Miscanthus
dissolved inorganic nitrogen
feedstocks
Panicum virgatum
Gulf of Mexico
Climate Change
Photosynthesis
Atmosphere
Biochemistry
biochemistry

Autophosphorylation-based calcium (Ca 2+ ) sensitivity priming and Ca 2+ /calmodulin inhibition of Arabidopsis thaliana Ca 2+ -dependent protein kinase 28 (CPK28)

Bender, K. W., Blackburn, R. K., Monaghan, J., Derbyshire, P., Menke, F. L. H., Zipfel, C., Goshe, M. B., Zielinski, R. E. & Huber, S. C., Mar 10 2017, In : Journal of Biological Chemistry. 292, 10, p. 3988-4002 15 p.

Research output: Contribution to journalArticle

Calmodulin
Arabidopsis
Protein Kinases
Calcium
Phosphotransferases

Behavioral responses of honey bees (Apis mellifera) to natural and synthetic xenobiotics in food

Liao, L. H., Wu, W. Y. & Berenbaum, M. R., Dec 1 2017, In : Scientific reports. 7, 1, 15924.

Research output: Contribution to journalArticle

xenobiotics
Apis mellifera
honey bees
phytopharmaceuticals
Apoidea

Bile acid sodium symporter BASS6 can transport glycolate and is involved in photorespiratory metabolism in Arabidopsis thaliana

South, P. F., Walker, B. J., Cavanagh, A. P., Rolland, V., Badger, M. & Ort, D. R., Apr 2017, In : Plant Cell. 29, 4, p. 808-823 16 p.

Research output: Contribution to journalArticle

glycolic acid
symporters
Symporters
photorespiration
bile acids

Brazilian sugarcane ethanol as an expandable green alternative to crude oil use

Jaiswal, D., De Souza, A. P., Larsen, S., LeBauer, D. S., Miguez, F. E., Sparovek, G., Bollero, G. A., Buckeridge, M. S. & Long, S. P., Nov 1 2017, In : Nature Climate Change. 7, 11, p. 788-792 5 p.

Research output: Contribution to journalArticle

crude oil
ethanol
climate change
animal
food

Can editors save peer review from peer reviewers?

D’Andrea, R. & O’Dwyer, J. P., Oct 2017, In : PloS one. 12, 10, e0186111.

Research output: Contribution to journalArticle

Peer Review
Manuscripts
peers
behavior problems
communication (human)

Cell wall metabolism and hexose allocation contribute to biomass accumulation in high yielding extreme segregants of a Saccharum interspecific F2 population

Wai, C. M., Zhang, J., Jones, T. C., Nagai, C. & Ming, R., Oct 11 2017, In : BMC genomics. 18, 1, 773.

Research output: Contribution to journalArticle

Saccharum
Hexoses
Biomass
Cell Wall
Population

Charcoal reflectance suggests heating duration and fuel moisture affected burn severity in four Alaskan tundra wildfires

Hudspith, V. A., Belcher, C. M., Barnes, J., Dash, C. B., Kelly, R. & Hu, F. S., Jan 1 2017, In : International Journal of Wildland Fire. 26, 4, p. 306-316 11 p.

Research output: Contribution to journalArticle

tundra
charcoal
wildfires
wildfire
reflectance

Climatic thresholds shape northern high-latitude fire regimes and imply vulnerability to future climate change

Young, A. M., Higuera, P. E., Duffy, P. A. & Hu, F. S., May 2017, In : Ecography. 40, 5, p. 606-617 12 p.

Research output: Contribution to journalArticle

fire regime
vulnerability
climate change
tundra
wildfires

Communicating about Science Communication: A Brief Entomological History

Berenbaum, M. R., Jan 1 2017, In : Annals of the Entomological Society of America. 110, 5, p. 435-438 4 p.

Research output: Contribution to journalArticle

Constraints of cold and shade on the phenology of spring ephemeral herb species

Augspurger, C. K. & Salk, C. F., Jan 1 2017, In : Journal of Ecology. 105, 1, p. 246-254 9 p.

Research output: Contribution to journalArticle

phenology
herb
herbs
Claytonia
shade

Contribution of above- and belowground bioenergy crop residues to soil carbon

Carvalho, J. L. N., Hudiburg, T. W., Franco, H. C. J. & Delucia, E. H., Aug 2017, In : GCB Bioenergy. 9, 8, p. 1333-1343 11 p.

Research output: Contribution to journalArticle

energy crops
bioenergy
crop residue
crop residues
soil carbon

Crops in silico: Generating virtual crops using an integrative and multi-scale modeling platform

Marshall-Colon, A., Long, S. P., Allen, D. K., Allen, G. D., Beard, D. A., Benes, B., Von Caemmerer, S., Christensen, A. J., Cox, D. J., Hart, J. C., Hirst, P. M., Kannan, K., Katz, D. S., Lynch, J. P., Millar, A. J., Panneerselvam, B., Price, N. D., Prusinkiewicz, P., Raila, D., Shekar, R. G. & 9 others, Shrivastava, S., Shukla, D., Srinivasan, V., Stitt, M., Turk, M. J., Voit, E. O., Wang, Y., Yin, X. & Zhu, X. G., May 15 2017, In : Frontiers in Plant Science. 8, 786.

Research output: Contribution to journalArticle

crops
engineering
ecosystems
plant biology
climate models

Cross-biome assessment of gross soil nitrogen cycling in California ecosystems

Yang, W. H., Ryals, R. A., Cusack, D. F. & Silver, W. L., Apr 1 2017, In : Soil Biology and Biochemistry. 107, p. 144-155 12 p.

Research output: Contribution to journalArticle

soil nitrogen
biome
Ecosystem
Nitrogen
Soil

Cytochrome P450 diversification and hostplant utilization patterns in specialist and generalist moths: Birth, death and adaptation

Calla, B., Noble, K., Johnson, R. M., Walden, K. K. O., Schuler, M. A., Robertson, H. M. & Berenbaum, M. R., Nov 2017, In : Molecular ecology. 26, 21, p. 6021-6035 15 p.

Research output: Contribution to journalArticle

Moths
cytochrome P-450
generalist
moth
Cytochrome P-450 Enzyme System

Decline in herb species diversity over two decades in a temperate deciduous forest in Illinois1

Augspurger, C. K. & Buck, S., Oct 1 2017, In : Journal of the Torrey Botanical Society. 144, 4, p. 392-405 14 p.

Research output: Contribution to journalArticle

temperate forests
temperate forest
deciduous forests
deciduous forest
herb

Decreasing, not increasing, leaf area will raise crop yields under global atmospheric change

Srinivasan, V., Kumar, P. & Long, S. P., Apr 1 2017, In : Global change biology. 23, 4, p. 1626-1635 10 p.

Research output: Contribution to journalArticle

crop yield
leaf area
Crops
crop
soybean

Development of a Three-Dimensional Ray-Tracing Model of Sugarcane Canopy Photosynthesis and Its Application in Assessing Impacts of Varied Row Spacing

Wang, Y., Song, Q., Jaiswal, D., P. de Souza, A., Long, S. P. & Zhu, X. G., Sep 1 2017, In : Bioenergy Research. 10, 3, p. 626-634 9 p.

Research output: Contribution to journalArticle

Photosynthesis
row spacing
Ray tracing
sugarcane
planting

Development of male-specific markers and identification of sex reversal mutants in papaya

Liao, Z., Yu, Q. & Ming, R., Feb 1 2017, In : Euphytica. 213, 2, 53.

Research output: Contribution to journalArticle

Carica
sex reversal
papayas
mutants
gender
Honey
Bees
Quercetin
Triazoles
Phytochemicals

Diurnal cycling transcription factors of pineapple revealed by genome-wide annotation and global transcriptomic analysis

Sharma, A., Wai, C. M., Ming, R. & Yu, Q., Sep 1 2017, In : Genome biology and evolution. 9, 9, p. 2170-2190 21 p.

Research output: Contribution to journalArticle

Ananas
pineapples
transcriptomics
Transcription Factors
transcription factors

Diversity in stomatal function is integral to modelling plant carbon and water fluxes

Wolz, K. J., Wertin, T. M., Abordo, M., Wang, D. & Leakey, A., Sep 1 2017, In : Nature Ecology and Evolution. 1, 9, p. 1292-1298 7 p.

Research output: Contribution to journalArticle

carbon
modeling
water
agricultural application
crop models

Draft genome sequence of Cercospora sojina isolate S9, a fungus causing frogeye leaf spot (FLS) disease of soybean

Zeng, F., Wang, C., Zhang, G., Wei, J., Bradley, C. A. & Ming, R. R., Jun 1 2017, In : Genomics Data. 12, p. 79-80 2 p.

Research output: Contribution to journalArticle

Fungi
Soybeans
Genes
Genome
Nucleic Acid Databases

Ecology: Contests between species aid biodiversity

O'Dwyer, J. P., Aug 10 2017, In : Nature. 548, 7666, p. 166-167 2 p.

Research output: Contribution to journalShort survey

Biodiversity
Ecology

Elevated CO2 and temperature increase soil C losses from a soybean–maize ecosystem

Black, C. K., Davis, S. C., Hudiburg, T. W., Bernacchi, C. J. & DeLucia, E. H., Jan 1 2017, In : Global change biology. 23, 1, p. 435-445 11 p.

Research output: Contribution to journalArticle

Ecosystems
Soils
ecosystem
soil
heating

Elevated ozone reduces photosynthetic carbon gain by accelerating leaf senescence of inbred and hybrid maize in a genotype-specific manner

Yendrek, C. R., Erice, G., Montes, C. M., Tomaz, T., Sorgini, C. A., Brown, P. J., McIntyre, L. M., Leakey, A. D. B. & Ainsworth, E. A., Dec 2017, In : Plant Cell and Environment. 40, 12, p. 3088-3100 13 p.

Research output: Contribution to journalArticle

Ozone
ozone
Zea mays
Carbon
Genotype

Enhanced evapotranspiration was observed during extreme drought from Miscanthus, opposite of other crops

Joo, E., Zeri, M., Hussain, M. Z., Delucia, E. H. & Bernacchi, C., Aug 2017, In : GCB Bioenergy. 9, 8, p. 1306-1319 14 p.

Research output: Contribution to journalArticle

Miscanthus
Evapotranspiration
Drought
Crops
evapotranspiration

Enhancing soybean photosynthetic CO2 assimilation using a cyanobacterial membrane protein, ictB

Hay, W. T., Bihmidine, S., Mutlu, N., Hoang, K. L., Awada, T., Weeks, D. P., Clemente, T. E. & Long, S. P., May 1 2017, In : Journal of Plant Physiology. 212, p. 58-68 11 p.

Research output: Contribution to journalArticle

Soybeans
membrane proteins
transporters
assimilation (physiology)
Membrane Proteins

Evaluating the Classical Versus an Emerging Conceptual Model of Peatland Methane Dynamics

Yang, W. H., McNicol, G., Teh, Y. A., Estera-Molina, K., Wood, T. E. & Silver, W. L., Sep 2017, In : Global Biogeochemical Cycles. 31, 9, p. 1435-1453 19 p.

Research output: Contribution to journalArticle

Methane
peatland
methane
Soils
methanogenesis

Evaluation of DeNitrification DeComposition model for estimating ammonia fluxes from chemical fertilizer application

Balasubramanian, S., Nelson, A., Koloutsou-Vakakis, S., Lin, J., Rood, M. J., Myles, L. T. & Bernacchi, C., May 1 2017, In : Agricultural and Forest Meteorology. 237-238, p. 123-134 12 p.

Research output: Contribution to journalArticle

fertilizer application
denitrification
ammonia
decomposition
degradation

Evaluation of the quantity and composition of sugars and lipid in the juice and bagasse of lipid producing sugarcane

Huang, H., Moreau, R. A., Powell, M. J., Wang, Z., Kannan, B., Altpeter, F., Grennan, A. K., Long, S. P. & Singh, V., Apr 1 2017, In : Biocatalysis and Agricultural Biotechnology. 10, p. 148-155 8 p.

Research output: Contribution to journalArticle

Saccharum
Bagasse
bagasse
Sugars
Lipids

Evolution and expression of the fructokinase gene family in Saccharum

Chen, Y., Zhang, Q., Hu, W., Zhang, X., Wang, L., Hua, X., Yu, Q., Ming, R. & Zhang, J., Feb 21 2017, In : BMC genomics. 18, 1, 197.

Research output: Contribution to journalArticle

fructokinase
Saccharum
Fructokinases
Gene Expression
Droughts

Explosive issues

Berenbaum, M. R., Mar 1 2017, In : American Entomologist. 63, 1, p. 3-5 3 p.

Research output: Contribution to journalArticle

explosive

Expression of cyanobacterial FBP/SBPase in soybean prevents yield depression under future climate conditions

Köhler, I. H., Ruiz-Vera, U. M., VanLoocke, A., Thomey, M. L., Clemente, T., Long, S. P., Ort, D. R. & Bernacchi, C. J., Jan 1 2017, In : Journal of experimental botany. 68, 3, p. 715-726 12 p.

Research output: Contribution to journalArticle

Climate
Soybeans
carbon dioxide
soybeans
climate

Geographically structured genetic variation in the Medicago lupulina–Ensifer mutualism

Harrison, T. L., Wood, C. W., Heath, K. D. & Stinchcombe, J. R., Jul 2017, In : Evolution. 71, 7, p. 1787-1801 15 p.

Research output: Contribution to journalArticle

Ensifer
Medicago
Medicago lupulina
Symbiosis
mutualism