Research Output

2018

Papain-like cysteine proteases in Carica papaya: Lineage-specific gene duplication and expansion

Liu, J., Sharma, A., Niewiara, M. J., Singh, R., Ming, R. & Yu, Q., Jan 6 2018, In : BMC genomics. 19, 1, 26.

Research output: Contribution to journalArticle

PGD: Pineapple Genomics Database

Xu, H., Yu, Q., Shi, Y., Hua, X., Tang, H., Yang, L., Ming, R. R. & Zhang, J., Dec 1 2018, In : Horticulture Research. 5, 1, 66.

Research output: Contribution to journalArticle

Phloem function: a key to understanding and manipulating plant responses to rising atmospheric [CO2]?

Ainsworth, E. & Lemonnier, P., Jun 2018, In : Current opinion in plant biology. 43, p. 50-56 7 p.

Research output: Contribution to journalReview article

Photosystem II Subunit S overexpression increases the efficiency of water use in a field-grown crop

Głowacka, K., Kromdijk, J., Kucera, K., Xie, J., Cavanagh, A. P., Leonelli, L., Leakey, A. D. B., Ort, D. R., Niyogi, K. K. & Long, S. P., Dec 1 2018, In : Nature communications. 9, 1, 868.

Research output: Contribution to journalArticle

Preface: Valedictory from a Gadfly Grammarian

Berenbaum, M. R., Jan 7 2018, In : Annual Review of Entomology. 63, p. v-ix

Research output: Contribution to journalReview article

Quantifying species extinction risk under temporal environmental variance

Fung, T., O'Dwyer, J. P. & Chisholm, R. A., May 2018, In : Ecological Complexity. 34, p. 139-146 8 p.

Research output: Contribution to journalArticle

Rampant polyphyly in the Arracacia clade (Apiaceae) and an assessment of the phylogenetic utility of 20 noncoding plastid loci

Danderson, C. A., Downie, S. R. & Hermann, M., Jan 2018, In : Molecular Phylogenetics and Evolution. 118, p. 286-305 20 p.

Research output: Contribution to journalArticle

Reality bites

Berenbaum, M., Jan 1 2018, In : American Entomologist. 64, 3, p. 134-137 4 p.

Research output: Contribution to journalArticle

Reduced arctic tundra productivity linked with landform and climate change interactions

Lara, M. J., Nitze, I., Grosse, G., Martin, P. & David McGuire, A., Dec 1 2018, In : Scientific Reports. 8, 1, 2345.

Research output: Contribution to journalArticle

Open Access

Revisiting paradigms of Ca2+ signaling protein kinase regulation in plants

Bender, K. W., Zielinski, R. E. & Huber, S. C., Jan 15 2018, In : Biochemical Journal. 475, 1, p. 207-223 17 p.

Research output: Contribution to journalReview article

Seasonal and ENSO Influences on the Stable Isotopic Composition of Galápagos Precipitation

Martin, N. J., Conroy, J., Noone, D., Cobb, K. M., Konecky, B. L. & Rea, S., Jan 16 2018, In : Journal of Geophysical Research: Atmospheres. 123, 1, p. 261-275 15 p.

Research output: Contribution to journalArticle

Shared genes but not shared genetic variation: Legume colonization by two belowground symbionts

Ossler, J. N. & Heath, K. D., Mar 2018, In : American Naturalist. 191, 3, p. 395-406 12 p.

Research output: Contribution to journalArticle

Similar photosynthetic response to elevated carbon dioxide concentration in species with different phloem loading strategies

Bishop, K. A., Lemonnier, P., Quebedeaux, J. C., Montes, C. M., Leakey, A. & Ainsworth, E., Sep 1 2018, In : Photosynthesis research. 137, 3, p. 453-464 12 p.

Research output: Contribution to journalArticle

Stability criteria for complex microbial communities

Butler, S. & O'Dwyer, J. P., Dec 1 2018, In : Nature communications. 9, 1, 2970.

Research output: Contribution to journalArticle

Sun-Induced Chlorophyll Fluorescence, Photosynthesis, and Light Use Efficiency of a Soybean Field from Seasonally Continuous Measurements

Miao, G., Guan, K., Yang, X., Bernacchi, C. J., Berry, J. A., DeLucia, E. H., Wu, J., Moore, C. E., Meacham, K., Cai, Y., Peng, B., Kimm, H. & Masters, M. D., Feb 2018, In : Journal of Geophysical Research: Biogeosciences. 123, 2, p. 610-623 14 p.

Research output: Contribution to journalArticle

Temporal transcriptional logic of dynamic regulatory networks underlying nitrogen signaling and use in plants

Varala, K., Marshall-Colón, A., Cirrone, J., Brooks, M. D., Pasquino, A. V., Léran, S., Mittal, S., Rock, T. M., Edwards, M. B., Kim, G. J., Ruffel, S., Richard McCombie, W., Shasha, D. & Coruzzi, G. M., Jun 19 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 25, p. 6494-6499 6 p.

Research output: Contribution to journalArticle

The critical role of local refugia in postglacial colonization of Chinese pine: joint inferences from DNA analyses, pollen records, and species distribution modeling

Hao, Q., de Lafontaine, G., Guo, D., Gu, H., Hu, F. S., Han, Y., Song, Z. & Liu, H., Apr 2018, In : Ecography. 41, 4, p. 592-606 15 p.

Research output: Contribution to journalArticle

The impacts of fluctuating light on crop performance

Slattery, R. A., Walker, B. J., Weber, A. P. M. & Ort, D. R., Feb 2018, In : Plant physiology. 176, 2, p. 990-1003 14 p.

Research output: Contribution to journalArticle

The impacts of four potential bioenergy crops on soil carbon dynamics as shown by biomarker analyses and DRIFT spectroscopy

Zhu, X., Liang, C., Masters, M. D., Kantola, I. B. & DeLucia, E. H., Jul 2018, In : GCB Bioenergy. 10, 7, p. 489-500 12 p.

Research output: Contribution to journalArticle

The important but weakening maize yield benefit of grain filling prolongation in the US Midwest

Zhu, P., Jin, Z., Zhuang, Q., Ciais, P., Bernacchi, C., Wang, X., Makowski, D. & Lobell, D., Oct 2018, In : Global change biology. 24, 10, p. 4718-4730 13 p.

Research output: Contribution to journalArticle

The superposition principle

Berenbaum, M. R., Jan 1 2018, In : American Entomologist. 64, 4, p. 204-206 3 p.

Research output: Contribution to journalArticle

Transcriptomic analysis of transgressive segregants revealed the central role of photosynthetic capacity and efficiency in biomass accumulation in sugarcane

Singh, R., Jones, T., Wai, C. M., Jifon, J., Nagai, C., Ming, R. & Yu, Q., Dec 1 2018, In : Scientific reports. 8, 1, 4415.

Research output: Contribution to journalArticle

Translucent windows: how uncertainty in competitive interactions impacts detection of community pattern

D'Andrea, R., Ostling, A. & O'Dwyer, J. P., Jun 2018, In : Ecology Letters. 21, 6, p. 826-835 10 p.

Research output: Contribution to journalLetter

Try Tri again? Resolving species boundaries in the Lomatium triternatum (Apiaceae) complex

Smith, J. F., Mansfield, D. H., Stevens, M., Sosa, E., Feist, M. A. E., Downie, S. R., Plunkett, G. M. & Darrach, M., May 2018, In : Journal of Systematics and Evolution. 56, 3, p. 218-230 13 p.

Research output: Contribution to journalArticle

Tundra landform and vegetation productivity trend maps for the arctic coastal plain of Northern Alaska

Lara, M. J., Nitze, I., Grosse, G. & David McGuire, A., Apr 10 2018, In : Scientific Data. 5, 180058.

Research output: Contribution to journalArticle

Open Access

Using phylogenetic analysis to investigate Eukaryotic gene origin

Zhang, D., Kan, X., Huss, S. E., Jiang, L., Chen, L. Q. & Hu, Y., Aug 14 2018, In : Journal of Visualized Experiments. 2018, 138, e56684.

Research output: Contribution to journalArticle

Variable selection in omics data: A practical evaluation of small sample sizes

Kirpich, A., Ainsworth, E. A., Wedow, J. M., Newman, J. R. B., Michailidis, G. & McIntyre, L. M., Jun 2018, In : PloS one. 13, 6, e0197910.

Research output: Contribution to journalArticle

Whence Lotka-Volterra? Conservation laws and integrable systems in ecology

O'Dwyer, J. P., Apr 24 2018, (Accepted/In press) In : Theoretical Ecology. p. 1-12 12 p.

Research output: Contribution to journalArticle

Wood decomposition in aquatic and terrestrial ecosystems in the tropics: Contrasting biotic and abiotic processes

Jones, J. M., Heath, K. D., Ferrer, A., Brown, S. P., Canam, T. & Dalling, J. W., Nov 18 2018, In : FEMS microbiology ecology. 95, 1, fiy223.

Research output: Contribution to journalArticle

2017

A comparative genome analysis of Cercospora sojina with other members of the pathogen genus Mycosphaerella on different plant hosts

Zeng, F., Lian, X., Zhang, G., Yu, X., Bradley, C. A. & Ming, R., Sep 2017, In : Genomics Data. 13, p. 54-63 10 p.

Research output: Contribution to journalArticle

Allosteric Control of a Plant Receptor Kinase through S-Glutathionylation

Moffett, A. S., Bender, K. W., Huber, S. C. & Shukla, D., Dec 5 2017, In : Biophysical journal. 113, 11, p. 2354-2363 10 p.

Research output: Contribution to journalArticle

A morphometric analysis of vegetation patterns in dryland ecosystems

Mander, L., Dekker, S. C., Li, M., Mio, W., Punyasena, S. & Lenton, T. M., Feb 15 2017, In : Royal Society Open Science. 4, 2, 60443.

Research output: Contribution to journalArticle

A realistic meteorological assessment of perennial biofuel crop deployment: a Southern Great Plains perspective

Wagner, M., Wang, M., Miguez-Macho, G., Miller, J., VanLoocke, A., Bagley, J. E., Bernacchi, C. J. & Georgescu, M., Jun 2017, In : GCB Bioenergy. 9, 6, p. 1024-1041 18 p.

Research output: Contribution to journalArticle

A roadmap for improving the representation of photosynthesis in Earth system models

Rogers, A., Medlyn, B. E., Dukes, J. S., Bonan, G., von Caemmerer, S., Dietze, M. C., Kattge, J., Leakey, A. D. B., Mercado, L. M., Niinemets, Ü., Prentice, I. C., Serbin, S. P., Sitch, S., Way, D. A. & Zaehle, S., Jan 1 2017, In : New Phytologist. 213, 1, p. 22-42 21 p.

Research output: Contribution to journalComment/debate

Assessing the potential to decrease the Gulf of Mexico hypoxic zone with Midwest US perennial cellulosic feedstock production

VanLoocke, A., Twine, T. E., Kucharik, C. J. & Bernacchi, C. J., May 1 2017, In : GCB Bioenergy. 9, 5, p. 858-875 18 p.

Research output: Contribution to journalArticle

Autophosphorylation-based calcium (Ca2+) sensitivity priming and Ca2+/calmodulin inhibition of Arabidopsis thaliana Ca2+-dependent protein kinase 28 (CPK28)

Bender, K. W., Blackburn, R. K., Monaghan, J., Derbyshire, P., Menke, F. L. H., Zipfel, C., Goshe, M. B., Zielinski, R. E. & Huber, S. C., Mar 10 2017, In : Journal of Biological Chemistry. 292, 10, p. 3988-4002 15 p.

Research output: Contribution to journalArticle

Behavioral responses of honey bees (Apis mellifera) to natural and synthetic xenobiotics in food

Liao, L. H., Wu, W. Y. & Berenbaum, M. R., Dec 1 2017, In : Scientific reports. 7, 1, 15924.

Research output: Contribution to journalArticle

Bile acid sodium symporter BASS6 can transport glycolate and is involved in photorespiratory metabolism in Arabidopsis thaliana

South, P. F., Walker, B. J., Cavanagh, A. P., Rolland, V., Badger, M. & Ort, D. R., Apr 2017, In : Plant Cell. 29, 4, p. 808-823 16 p.

Research output: Contribution to journalArticle

Brazilian sugarcane ethanol as an expandable green alternative to crude oil use

Jaiswal, D., De Souza, A. P., Larsen, S., LeBauer, D. S., Miguez, F. E., Sparovek, G., Bollero, G. A., Buckeridge, M. S. & Long, S. P., Nov 1 2017, In : Nature Climate Change. 7, 11, p. 788-792 5 p.

Research output: Contribution to journalArticle

Can editors save peer review from peer reviewers?

D’Andrea, R. & O’Dwyer, J. P., Oct 2017, In : PloS one. 12, 10, e0186111.

Research output: Contribution to journalArticle

Cell wall metabolism and hexose allocation contribute to biomass accumulation in high yielding extreme segregants of a Saccharum interspecific F2 population

Wai, C. M., Zhang, J., Jones, T. C., Nagai, C. & Ming, R., Oct 11 2017, In : BMC genomics. 18, 1, 773.

Research output: Contribution to journalArticle

Charcoal reflectance suggests heating duration and fuel moisture affected burn severity in four Alaskan tundra wildfires

Hudspith, V. A., Belcher, C. M., Barnes, J., Dash, C. B., Kelly, R. & Hu, F. S., Jan 1 2017, In : International Journal of Wildland Fire. 26, 4, p. 306-316 11 p.

Research output: Contribution to journalArticle

Climatic thresholds shape northern high-latitude fire regimes and imply vulnerability to future climate change

Young, A. M., Higuera, P. E., Duffy, P. A. & Hu, F. S., May 2017, In : Ecography. 40, 5, p. 606-617 12 p.

Research output: Contribution to journalArticle

Constraints of cold and shade on the phenology of spring ephemeral herb species

Augspurger, C. K. & Salk, C. F., Jan 1 2017, In : Journal of Ecology. 105, 1, p. 246-254 9 p.

Research output: Contribution to journalArticle

Contribution of above- and belowground bioenergy crop residues to soil carbon

Carvalho, J. L. N., Hudiburg, T. W., Franco, H. C. J. & DeLucia, E. H., Aug 2017, In : GCB Bioenergy. 9, 8, p. 1333-1343 11 p.

Research output: Contribution to journalArticle