Research Output 1971 2019

2017

Climatic thresholds shape northern high-latitude fire regimes and imply vulnerability to future climate change

Young, A. M., Higuera, P. E., Duffy, P. A. & Hu, F. S., May 2017, In : Ecography. 40, 5, p. 606-617 12 p.

Research output: Contribution to journalArticle

fire regime
vulnerability
climate change
tundra
wildfires

Constraints of cold and shade on the phenology of spring ephemeral herb species

Augspurger, C. K. & Salk, C. F., Jan 1 2017, In : Journal of Ecology. 105, 1, p. 246-254 9 p.

Research output: Contribution to journalArticle

phenology
herb
herbs
Claytonia
shade

Contribution of above- and belowground bioenergy crop residues to soil carbon

Carvalho, J. L. N., Hudiburg, T. W., Franco, H. C. J. & Delucia, E. H., Aug 2017, In : GCB Bioenergy. 9, 8, p. 1333-1343 11 p.

Research output: Contribution to journalArticle

energy crops
bioenergy
crop residue
crop residues
soil carbon

Crops in silico: Generating virtual crops using an integrative and multi-scale modeling platform

Marshall-Colon, A., Long, S. P., Allen, D. K., Allen, G. D., Beard, D. A., Benes, B., Von Caemmerer, S., Christensen, A. J., Cox, D. J., Hart, J. C., Hirst, P. M., Kannan, K., Katz, D. S., Lynch, J. P., Millar, A. J., Panneerselvam, B., Price, N. D., Prusinkiewicz, P., Raila, D., Shekar, R. G. & 9 others, Shrivastava, S., Shukla, D., Srinivasan, V., Stitt, M., Turk, M. J., Voit, E. O., Wang, Y., Yin, X. & Zhu, X. G., May 15 2017, In : Frontiers in Plant Science. 8, 786.

Research output: Contribution to journalArticle

crops
engineering
ecosystems
plant biology
climate models

Cross-biome assessment of gross soil nitrogen cycling in California ecosystems

Yang, W., Ryals, R. A., Cusack, D. F. & Silver, W. L., Apr 1 2017, In : Soil Biology and Biochemistry. 107, p. 144-155 12 p.

Research output: Contribution to journalArticle

soil nitrogen
biome
Ecosystem
Nitrogen
Soil

Cytochrome P450 diversification and hostplant utilization patterns in specialist and generalist moths: Birth, death and adaptation

Calla, B., Noble, K., Johnson, R. M., Walden, K. K. O., Schuler, M. A., Robertson, H. M. & Berenbaum, M. R., Nov 2017, In : Molecular ecology. 26, 21, p. 6021-6035 15 p.

Research output: Contribution to journalArticle

Moths
cytochrome P-450
generalist
moth
Cytochrome P-450 Enzyme System

Decline in herb species diversity over two decades in a temperate deciduous forest in Illinois 1

Augspurger, C. K. & Buck, S., Oct 1 2017, In : Journal of the Torrey Botanical Society. 144, 4, p. 392-405 14 p.

Research output: Contribution to journalArticle

temperate forests
temperate forest
deciduous forests
deciduous forest
herb

Decreasing, not increasing, leaf area will raise crop yields under global atmospheric change

Srinivasan, V., Kumar, P. & Long, S. P., Apr 1 2017, In : Global change biology. 23, 4, p. 1626-1635 10 p.

Research output: Contribution to journalArticle

crop yield
leaf area
Crops
crop
soybean

Development of a Three-Dimensional Ray-Tracing Model of Sugarcane Canopy Photosynthesis and Its Application in Assessing Impacts of Varied Row Spacing

Wang, Y., Song, Q., Jaiswal, D., P. de Souza, A., Long, S. P. & Zhu, X. G., Sep 1 2017, In : Bioenergy Research. 10, 3, p. 626-634 9 p.

Research output: Contribution to journalArticle

Photosynthesis
row spacing
Ray tracing
sugarcane
planting

Development of male-specific markers and identification of sex reversal mutants in papaya

Liao, Z., Yu, Q. & Ming, R. R., Feb 1 2017, In : Euphytica. 213, 2, 53.

Research output: Contribution to journalArticle

Carica
sex reversal
papayas
mutants
gender
Honey
Bees
Quercetin
Triazoles
Phytochemicals

Diurnal cycling transcription factors of pineapple revealed by genome-wide annotation and global transcriptomic analysis

Sharma, A., Wai, C. M., Ming, R. R. & Yu, Q., Sep 1 2017, In : Genome biology and evolution. 9, 9, p. 2170-2190 21 p.

Research output: Contribution to journalArticle

Ananas
pineapples
transcriptomics
Transcription Factors
transcription factors

Diversity in stomatal function is integral to modelling plant carbon and water fluxes

Wolz, K. J., Wertin, T. M., Abordo, M., Wang, D. & Leakey, A., Sep 1 2017, In : Nature Ecology and Evolution. 1, 9, p. 1292-1298 7 p.

Research output: Contribution to journalArticle

carbon
modeling
water
agricultural application
crop models

Draft genome sequence of Cercospora sojina isolate S9, a fungus causing frogeye leaf spot (FLS) disease of soybean

Zeng, F., Wang, C., Zhang, G., Wei, J., Bradley, C. A. & Ming, R. R., Jun 1 2017, In : Genomics Data. 12, p. 79-80 2 p.

Research output: Contribution to journalArticle

Fungi
Soybeans
Genes
Genome
Nucleic Acid Databases

Ecology: Contests between species aid biodiversity

O'Dwyer, J. P., Aug 10 2017, In : Nature. 548, 7666, p. 166-167 2 p.

Research output: Contribution to journalShort survey

Biodiversity
Ecology

Elevated CO2 and temperature increase soil C losses from a soybean–maize ecosystem

Black, C. K., Davis, S. C., Hudiburg, T. W., Bernacchi, C. & Delucia, E. H., Jan 1 2017, In : Global change biology. 23, 1, p. 435-445 11 p.

Research output: Contribution to journalArticle

Ecosystems
Soils
ecosystem
soil
heating

Elevated ozone reduces photosynthetic carbon gain by accelerating leaf senescence of inbred and hybrid maize in a genotype-specific manner

Yendrek, C. R., Erice, G., Montes, C. M., Tomaz, T., Sorgini, C. A., Brown, P. J., McIntyre, L. M., Leakey, A. & Ainsworth, E., Dec 2017, In : Plant Cell and Environment. 40, 12, p. 3088-3100 13 p.

Research output: Contribution to journalArticle

Ozone
ozone
Zea mays
Carbon
Genotype

Enhanced evapotranspiration was observed during extreme drought from Miscanthus, opposite of other crops

Joo, E., Zeri, M., Hussain, M. Z., Delucia, E. H. & Bernacchi, C., Aug 2017, In : GCB Bioenergy. 9, 8, p. 1306-1319 14 p.

Research output: Contribution to journalArticle

Miscanthus
Evapotranspiration
Drought
Crops
evapotranspiration

Enhancing soybean photosynthetic CO2 assimilation using a cyanobacterial membrane protein, ictB

Hay, W. T., Bihmidine, S., Mutlu, N., Hoang, K. L., Awada, T., Weeks, D. P., Clemente, T. E. & Long, S. P., May 1 2017, In : Journal of Plant Physiology. 212, p. 58-68 11 p.

Research output: Contribution to journalArticle

Soybeans
membrane proteins
transporters
assimilation (physiology)
Membrane Proteins

Evaluating the Classical Versus an Emerging Conceptual Model of Peatland Methane Dynamics

Yang, W. H., McNicol, G., Teh, Y. A., Estera-Molina, K., Wood, T. E. & Silver, W. L., Sep 2017, In : Global Biogeochemical Cycles. 31, 9, p. 1435-1453 19 p.

Research output: Contribution to journalArticle

Methane
peatland
methane
Soils
methanogenesis

Evaluation of DeNitrification DeComposition model for estimating ammonia fluxes from chemical fertilizer application

Balasubramanian, S., Nelson, A., Koloutsou-Vakakis, S., Lin, J., Rood, M. J., Myles, L. T. & Bernacchi, C., May 1 2017, In : Agricultural and Forest Meteorology. 237-238, p. 123-134 12 p.

Research output: Contribution to journalArticle

fertilizer application
denitrification
ammonia
decomposition
degradation

Evaluation of the quantity and composition of sugars and lipid in the juice and bagasse of lipid producing sugarcane

Huang, H., Moreau, R. A., Powell, M. J., Wang, Z., Kannan, B., Altpeter, F., Grennan, A. K., Long, S. P. & Singh, V., Apr 1 2017, In : Biocatalysis and Agricultural Biotechnology. 10, p. 148-155 8 p.

Research output: Contribution to journalArticle

Saccharum
Bagasse
bagasse
Sugars
Lipids

Evolution and expression of the fructokinase gene family in Saccharum

Chen, Y., Zhang, Q., Hu, W., Zhang, X., Wang, L., Hua, X., Yu, Q., Ming, R. R. & Zhang, J., Feb 21 2017, In : BMC genomics. 18, 1, 197.

Research output: Contribution to journalArticle

fructokinase
Saccharum
Fructokinases
Gene Expression
Droughts

Explosive issues

Berenbaum, M. R., Mar 1 2017, In : American Entomologist. 63, 1, p. 3-5 3 p.

Research output: Contribution to journalArticle

explosive

Expression of cyanobacterial FBP/SBPase in soybean prevents yield depression under future climate conditions

Köhler, I. H., Ruiz-Vera, U. M., VanLoocke, A., Thomey, M. L., Clemente, T., Long, S. P., Ort, D. R. & Bernacchi, C. J., Jan 1 2017, In : Journal of experimental botany. 68, 3, p. 715-726 12 p.

Research output: Contribution to journalArticle

Climate
Soybeans
carbon dioxide
soybeans
climate

Geographically structured genetic variation in the Medicago lupulina–Ensifer mutualism

Harrison, T. L., Wood, C. W., Heath, K. D. & Stinchcombe, J. R., Jul 2017, In : Evolution. 71, 7, p. 1787-1801 15 p.

Research output: Contribution to journalArticle

Ensifer
Medicago
Medicago lupulina
Symbiosis
mutualism

High-throughput phenotyping of maize leaf physiological and biochemical traits using hyperspectral reflectance

Yendrek, C. R., Tomaz, T., Montes, C. M., Cao, Y., Morse, A. M., Brown, P. J., McIntyre, L. M., Leakey, A. & Ainsworth, E., Jan 2017, In : Plant physiology. 173, 1, p. 614-626 13 p.

Research output: Contribution to journalArticle

Chlorophyll
Least-Squares Analysis
reflectance
Zea mays
Nitrogen

Holocene climatic change in the Alaskan Arctic as inferred from oxygen-isotope and lake-sediment analyses at Wahoo Lake

Vachula, R. S., Chipman, M. L. & Hu, F. S., Nov 1 2017, In : Holocene. 27, 11, p. 1631-1644 14 p.

Research output: Contribution to journalArticle

oxygen isotope
lacustrine deposit
Holocene
climate change
lake

Holocene tree line changes in the Canadian Cordillera are controlled by climate and topography

Schwörer, C., Gavin, D. G., Walker, I. R. & Hu, F. S., May 2017, In : Journal of Biogeography. 44, 5, p. 1148-1159 12 p.

Research output: Contribution to journalArticle

treeline
cordillera
topography
Holocene
climate

Identification and Characterization of microRNAs from Saccharum officinarum L by Deep Sequencing

Xue, A., Li, Z., Cai, M., Zhang, Q., Zhang, X., Ming, R. R. & Zhang, J., Sep 1 2017, In : Tropical Plant Biology. 10, 2-3, p. 134-150 17 p.

Research output: Contribution to journalArticle

High-Throughput Nucleotide Sequencing
Saccharum
Saccharum officinarum
MicroRNAs
microRNA

Identification of large variation in the photosynthetic induction response among 37 soybean [Glycine max (L.) Merr.] genotypes that is not correlated with steady-state photosynthetic capacity

Soleh, M. A., Tanaka, Y., Kim, S. Y., Huber, S. C., Sakoda, K. & Shiraiwa, T., Mar 1 2017, In : Photosynthesis research. 131, 3, p. 305-315 11 p.

Research output: Contribution to journalArticle

Soybeans
Glycine
Glycine max
Oxygenases
Photosynthesis

Impacts of dietary phytochemicals in the presence and absence of pesticides on longevity of honey bees (Apis mellifera)

Liao, L. H., Wu, W. Y. & Berenbaum, M. R., Feb 14 2017, In : Insects. 8, 1, 22.

Research output: Contribution to journalArticle

p-coumaric acid
Apis mellifera
quercetin
phytopharmaceuticals
honey bees

Importance of biophysical effects on climate warming mitigation potential of biofuel crops over the conterminous United States

Zhu, P., Zhuang, Q., Eva, J. & Bernacchi, C., Mar 1 2017, In : GCB Bioenergy. 9, 3, p. 577-590 14 p.

Research output: Contribution to journalArticle

energy crops
Biofuels
biofuel
global warming
Crops
Genetic Drift
Names
Cultural Evolution
infants
Maximum likelihood estimation

Integrative view of the diversity and evolution of SWEET and semiSWEET sugar transporters

Jia, B., Zhu, X. F., Pu, Z. J., Duan, Y. X., Hao, L. J., Zhang, J., Chen, L., Jeon, C. O. & Xuan, Y. H., Dec 20 2017, In : Frontiers in Plant Science. 8, 2178.

Research output: Contribution to journalArticle

transporters
prokaryotic cells
sugars
eukaryotic cells
wild rice

Isolation of ripening-related genes from ethylene/1-MCP treated papaya through RNA-seq

Shen, Y. H., Lu, B. G., Feng, L., Yang, F. Y., Geng, J. J., Ming, R. R. & Chen, X. J., Aug 31 2017, In : BMC genomics. 18, 1, 671.

Research output: Contribution to journalArticle

Carica
RNA
Fruit
Genes
Carotenoids

Isotopic analysis on nanogram quantities of carbon from dissolved insect cuticle: a method for paleoenvironmental inferences

Zhao, Y., Nelson, D. M., Clegg, B. F., An, C. B. & Hu, F. S., Nov 15 2017, In : Rapid Communications in Mass Spectrometry. 31, 21, p. 1825-1834 10 p.

Research output: Contribution to journalArticle

Chitin
Isotopes
Mass spectrometry
Carbon
Wire

Leaf and canopy scale drivers of genotypic variation in soybean response to elevated carbon dioxide concentration

Sanz-Sáez, Á., Koester, R. P., Rosenthal, D. M., Montes, C. M., Ort, D. R. & Ainsworth, E., Sep 2017, In : Global change biology. 23, 9, p. 3908-3920 13 p.

Research output: Contribution to journalArticle

Carbon Dioxide
Crops
soybean
Seed
carbon dioxide

Linkages Among Climate, Fire, and Thermoerosion in Alaskan Tundra Over the Past Three Millennia

Chipman, M. L. & Hu, F. S., Dec 2017, In : Journal of Geophysical Research: Biogeosciences. 122, 12, p. 3362-3377 16 p.

Research output: Contribution to journalArticle

tundra
linkages
climate
Fires
lakes

Loss of photosynthetic efficiency in the shade. An Achilles heel for the dense modern stands of our most productive C 4 crops?

Pignon, C. P., Jaiswal, D., McGrath, J. M. & Long, S. P., Jan 1 2017, In : Journal of experimental botany. 68, 2, p. 335-345 11 p.

Research output: Contribution to journalArticle

Carbon Monoxide
shade
canopy
crops
assimilation (physiology)

Macroevolutionary synthesis of flowering plant sexual systems

Goldberg, E. E., Otto, S. P., Vamosi, J. C., Mayrose, I., Sabath, N., Ming, R. R. & Ashman, T. L., Apr 1 2017, In : Evolution. 71, 4, p. 898-912 15 p.

Research output: Contribution to journalArticle

sexual systems
Sex Differentiation
angiosperm
dioecy
hermaphroditism

Molecular dynamics simulations reveal the conformational dynamics of Arabidopsis thaliana BRI1 and BAK1 receptor-like kinases

Moffett, A. S., Bender, K. W., Huber, S. C. & Shukla, D., Jan 1 2017, In : Journal of Biological Chemistry. 292, 30, p. 12643-12652 10 p.

Research output: Contribution to journalArticle

Brassinosteroids
Molecular Dynamics Simulation
Arabidopsis
Molecular dynamics
Phosphotransferases

New combinations in Lomatium (Apiaceae, subfamily apioideae)

Feist, M. A. E., Smith, J. F., Mansfield, D. H., Darrach, M., McNeill, R. P., Downie, S. R., Plunkett, G. M. & Wilson, B. L., Aug 1 2017, In : Phytotaxa. 316, 1, p. 95-98 4 p.

Research output: Contribution to journalLetter

Lomatium
Apiaceae
floristics
new combination
phylogenetics

Nitrogen addition alters ectomycorrhizal fungal communities and soil enzyme activities in a tropical montane forest

Corrales, A., Turner, B. L., Tedersoo, L., Anslan, S. & Dalling, J. W., Jun 1 2017, In : Fungal Ecology. 27, p. 14-23 10 p.

Research output: Contribution to journalArticle

soil enzymes
fungal communities
montane forest
montane forests
tropical forests

No evidence that boron influences tree species distributions in lowland tropical forests of Panama

Turner, B. L., Zalamea, P. C., Condit, R., Winter, K., Wright, S. J. & Dalling, J. W., Apr 1 2017, In : New Phytologist. 214, 1, p. 108-119 12 p.

Research output: Contribution to journalArticle

Panama
Boron
lowland forests
boron
tropical forests

On the long-term hydroclimatic sustainability of perennial bioenergy crop expansion over the United States

Wang, M., Wagner, M., Miguez-Macho, G., Kamarianakis, Y., Mahalov, A., Moustaoui, M., Miller, J., VanLoocke, A., Bagley, J. E., Bernacchi, C. & Georgescu, M., Jan 1 2017, In : Journal of Climate. 30, 7, p. 2535-2557 23 p.

Research output: Contribution to journalArticle

bioenergy
sustainability
crop
cropping practice
soil moisture

Orientation of navel orangeworm (lepidoptera: Pyralidae) larvae and adults toward volatiles associated with almond hull split and aspergillus flavus

Bush, D. S., Lawrance, A., Siegel, J. P. & Berenbaum, M. R., Jun 1 2017, In : Environmental entomology. 46, 3, p. 602-608 7 p.

Research output: Contribution to journalArticle

Amyelois transitella
Pyralidae
Aspergillus flavus
hull
Lepidoptera

PacBio Sequencing Reveals Transposable Elements as a Key Contributor to Genomic Plasticity and Virulence Variation in Magnaporthe oryzae

Bao, J., Chen, M., Zhong, Z., Tang, W., Lin, L., Zhang, X., Jiang, H., Zhang, D., Miao, C., Tang, H., Zhang, J., Lu, G., Ming, R. R., Norvienyeku, J., Wang, B. & Wang, Z., Nov 6 2017, In : Molecular Plant. 10, 11, p. 1465-1468 4 p.

Research output: Contribution to journalLetter

Magnaporthe
Magnaporthe oryzae
DNA Transposable Elements
transposons
Virulence

PeRL: A circum-Arctic Permafrost Region Pond and Lake database

Muster, S., Roth, K., Langer, M., Lange, S., Cresto Aleina, F., Bartsch, A., Morgenstern, A., Grosse, G., Jones, B., Sannel, A. B. K., Sjöberg, Y., Günther, F., Andresen, C., Veremeeva, A., Lindgren, R. P., Bouchard, F., Lara, J. M., Fortier, D., Charbonneau, S., Virtanen, A. T. & 6 others, Hugelius, G., Palmtag, J., Siewert, B. M., Riley, J. W., Koven, D. C. & Boike, J., Jun 6 2017, In : Earth System Science Data. 9, 1, p. 317-348 32 p.

Research output: Contribution to journalArticle

Open Access
permafrost
pond
lake
land surface
surface area

Photosynthesis: ancient, essential, complex, diverse … and in need of improvement in a changing world

Niinemets, Ü., Berry, J. A., von Caemmerer, S., Ort, D. R., Parry, M. A. J. & Poorter, H., Jan 1 2017, In : New Phytologist. 213, 1, p. 43-47 5 p.

Research output: Contribution to journalArticle