Research Output 1975 2020

The effects of chilling in the dark and in the light on photosynthesis of tomato: electron transfer reactions

Kee, S. C., Martin, B. & Ort, D. R., Jan 1 1986, In : Photosynthesis research. 8, 1, p. 41-51 11 p.

Research output: Contribution to journalArticle

Chilling
Photosynthesis
Lycopersicon esculentum
electron transfer
photosynthesis

The effects of chilling in the light on ribulose-1,5-bisphosphate carboxylase/oxygenase activation in tomato (Lycopersicon esculentum Mill.)

Byrd, G. T., Ort, D. R. & Ogren, W. L., Jan 1 1995, In : Plant physiology. 107, 2, p. 585-591 7 p.

Research output: Contribution to journalArticle

ribulose 1,5-diphosphate
oxygenases
Solanum lycopersicum var. lycopersicum
tomatoes
cold treatment

The effects of chloroplast coupling factor reduction on the energetics of activation and on the energetics and efficiency of ATP formation.

Hangarter, R. P., Grandoni, P. & Ort, D. R., Oct 5 1987, In : The Journal of biological chemistry. 262, 28, p. 13513-13519 7 p.

Research output: Contribution to journalArticle

Chloroplast Proton-Translocating ATPases
Adenosine Triphosphate
Chemical activation
Adenosine Diphosphate
Thylakoids
photoinhibition
Zea mays
Temperature
Growth
leaves

The effects of elevated CO2 concentration on soybean gene expression. An analysis of growing and mature leaves

Ainsworth, E. A., Rogers, A., Vodkin, L. O., Walter, A. & Schurr, U., Sep 1 2006, In : Plant physiology. 142, 1, p. 135-147 13 p.

Research output: Contribution to journalArticle

Soybeans
carbon dioxide
soybeans
Gene Expression
gene expression

The effects of gibberellic acid on sex expression and secondary sexual characteristics in papaya

Han, J., Murray, J. E., Yu, Q., Moore, P. H. & Ming, R., Mar 2014, In : HortScience. 49, 3, p. 378-383 6 p.

Research output: Contribution to journalArticle

papayas
gibberellic acid
gibberellins
gender
Carica papaya

The effects of seasonal and long-term climatic variability on Neotropical flowering phenology: An ecoinformatic analysis of aerial pollen data

Haselhorst, D. S., Tcheng, D. K., Moreno, J. E. & Punyasena, S. W., Sep 2017, In : Ecological Informatics. 41, p. 54-63 10 p.

Research output: Contribution to journalArticle

Pollen
Flowering
phenology
flowering
pollen

The effects of tropospheric ozone on net primary productivity and implications for climate change

Ainsworth, E. A., Yendrek, C. R., Sitch, S., Collins, W. J. & Emberson, L. D., Jun 1 2012, In : Annual Review of Plant Biology. 63, p. 637-661 25 p.

Research output: Contribution to journalReview article

Climate Change
Ozone
ozone
stomata
primary productivity

The Evaluation of Feedstocks in GCBB Continues with a Special Issue on Agave for Bioenergy

Davis, S. C., Griffiths, H., Holtum, J., Saavedra, A. L. & Long, S. P., Feb 2011, In : GCB Bioenergy. 3, 1, p. 1-3 3 p.

Research output: Contribution to journalEditorial

Agave
bioenergy
feedstocks
Feedstocks
evaluation

The evolutionary history of Eryngium (Apiaceae, Saniculoideae): Rapid radiations, long distance dispersals, and hybridizations

Calviño, C. I., Martínez, S. G. & Downie, S. R., Mar 1 2008, In : Molecular Phylogenetics and Evolution. 46, 3, p. 1129-1150 22 p.

Research output: Contribution to journalArticle

Eryngium
Apiaceae
hybridization
History
Radiation
Sium
Apiaceae
vicariance
domestication
Berula

The footprint of Alaskan tundra fires during the past half-century: Implications for surface properties and radiative forcing

Rocha, A. V., Loranty, M. M., Higuera, P. E., MacK, M. C., Hu, F. S., Jones, B. M., Breen, A. L., Rastetter, E. B., Goetz, S. J. & Shaver, G. R., Oct 2012, In : Environmental Research Letters. 7, 4, 044039.

Research output: Contribution to journalArticle

Surface Properties
radiative forcing
tundra
footprint
Surface properties

The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication

Zhuang, W., Chen, H., Yang, M., Wang, J., Pandey, M. K., Zhang, C., Chang, W. C., Zhang, L., Zhang, X., Tang, R., Garg, V., Wang, X., Tang, H., Chow, C. N., Wang, J., Deng, Y., Wang, D., Khan, A. W., Yang, Q., Cai, T. & 58 others, Bajaj, P., Wu, K., Guo, B., Zhang, X., Li, J., Liang, F., Hu, J., Liao, B., Liu, S., Chitikineni, A., Yan, H., Zheng, Y., Shan, S., Liu, Q., Xie, D., Wang, Z., Khan, S. A., Ali, N., Zhao, C., Li, X., Luo, Z., Zhang, S., Zhuang, R., Peng, Z., Wang, S., Mamadou, G., Zhuang, Y., Zhao, Z., Yu, W., Xiong, F., Quan, W., Yuan, M., Li, Y., Zou, H., Xia, H., Zha, L., Fan, J., Yu, J., Xie, W., Yuan, J., Chen, K., Zhao, S., Chu, W., Chen, Y., Sun, P., Meng, F., Zhuo, T., Zhao, Y., Li, C., He, G., Zhao, Y., Wang, C., Kavikishor, P. B., Pan, R. L., Paterson, A. H., Wang, X., Ming, R. & Varshney, R. K., May 1 2019, In : Nature Genetics. 51, 5, p. 865-876 12 p.

Research output: Contribution to journalArticle

Open Access
Polyploidy
Karyotype
Fabaceae
Genome
Seeds

The global potential for Agave as a biofuel feedstock

Davis, S. C., Dohleman, F. G. & Long, S. P., Feb 2011, In : GCB Bioenergy. 3, 1, p. 68-78 11 p.

Research output: Contribution to journalReview article

Agave
Biofuels
feedstocks
biofuels
biofuel

The greenhouse gas value of ecosystems

Anderson-Teixeira, K. J. & Delucia, E. H., Jan 1 2011, In : Global change biology. 17, 1, p. 425-438 14 p.

Research output: Contribution to journalArticle

Greenhouse gases
Ecosystems
greenhouse gas
ecosystem
Land use

The growth of soybean under free air [CO2] enrichment (FACE) stimulates photosynthesis while decreasing in vivo Rubisco capacity

Bernacchi, C. J., Morgan, P. B., Ort, D. R. & Long, S. P., Jan 1 2005, In : Planta. 220, 3, p. 434-446 13 p.

Research output: Contribution to journalArticle

Oxygenases
Photosynthesis
ribulose 1,5-diphosphate
oxygenases
Soybeans
Campanulaceae
Chloroplast Genome
Embryophyta
Chloroplast DNA
Angiosperms

The hydrological response of surface water to recent climate variability: A remote sensing case study from the central tropical Pacific

Higley, M. C. & Conroy, J., Jul 30 2019, In : Hydrological Processes. 33, 16, p. 2227-2239 13 p.

Research output: Contribution to journalArticle

hydrological response
remote sensing
surface water
climate
sea level change
Photosynthesis
Chlorophyll
antennae
photosynthesis
canopy

The impact of species-neutral stage structure on macroecological patterns

D’Andrea, R. & O'Dwyer, J. P., Dec 1 2017, In : Theoretical Ecology. 10, 4, p. 433-442 10 p.

Research output: Contribution to journalArticle

fecundity
power law
prediction
mortality
distribution

The impact of water management practices on subtropical pasture methane emissions and ecosystem service payments

Chamberlain, S. D., Groffman, P. M., Boughton, E. H., Gomez-Casanovas, N., DeLucia, E. H., Bernacchi, C. J. & Sparks, J. P., Jun 2017, In : Ecological Applications. 27, 4, p. 1199-1209 11 p.

Research output: Contribution to journalArticle

ecosystem service
water management
management practice
pasture
methane

The impacts of fluctuating light on crop performance

Slattery, R. A., Walker, B. J., Weber, A. P. M. & Ort, D. R., Feb 2018, In : Plant physiology. 176, 2, p. 990-1003 14 p.

Research output: Contribution to journalArticle

Light
Photosynthesis
crops
canopy
C4 photosynthesis

The impacts of four potential bioenergy crops on soil carbon dynamics as shown by biomarker analyses and DRIFT spectroscopy

Zhu, X., Liang, C., Masters, M. D., Kantola, I. B. & Delucia, E. H., Jul 2018, In : GCB Bioenergy. 10, 7, p. 489-500 12 p.

Research output: Contribution to journalArticle

energy crops
bioenergy
Biomarkers
soil carbon
soil organic carbon

The importance of ENSO nonlinearities in tropical pacific response to external forcing

Karamperidou, C., Jin, F. F. & Conroy, J. L., Oct 1 2017, In : Climate Dynamics. 49, 7-8, p. 2695-2704 10 p.

Research output: Contribution to journalArticle

Southern Oscillation
nonlinearity
warming
regional climate
simulation
Breeding
breeding
Forests
intraspecific variation

The importance of reducing conditions for the inhibitory action of DBMIB+, antimycin A and EDAC+ on cyclic photophosphorylation

Huber, S. C. & Edwards, G. E., Jul 1 1977, In : FEBS Letters. 79, 1, p. 207-211 5 p.

Research output: Contribution to journalArticle

Photophosphorylation
Antimycin A

The important but weakening maize yield benefit of grain filling prolongation in the US Midwest

Zhu, P., Jin, Z., Zhuang, Q., Ciais, P., Bernacchi, C., Wang, X., Makowski, D. & Lobell, D., Oct 2018, In : Global change biology. 24, 10, p. 4718-4730 13 p.

Research output: Contribution to journalArticle

maize
food security
Crops
Drought
crop yield

The influence of aridity and fire on Holocene prairie communities in the eastern Prairie Peninsula

Nelson, D. M., Feng, S. H., Grimm, E. C., Curry, B. B. & Slate, J. E., Oct 1 2006, In : Ecology. 87, 10, p. 2523-2536 14 p.

Research output: Contribution to journalArticle

dry environmental conditions
aridity
prairies
prairie
Holocene

The influence of drought and heat stress on long-term carbon fluxes of bioenergy crops grown in the Midwestern USA

Joo, E., Hussain, M. Z., Zeri, M., Masters, M. D., Miller, J. N., Gomez-Casanovas, N., DeLucia, E. H. & Bernacchi, C. J., Sep 1 2016, In : Plant Cell and Environment. 39, 9, p. 1928-1940 13 p.

Research output: Contribution to journalArticle

Carbon Cycle
Droughts
energy crops
Miscanthus
Ecosystem

The influence of photosynthetic acclimation to rising CO2 and warmer temperatures on leaf and canopy photosynthesis models

Bagley, J., Rosenthal, D. M., Ruiz-Vera, U. M., Siebers, M. H., Kumar, P., Ort, D. R. & Bernacchi, C. J., Feb 2015, In : Global Biogeochemical Cycles. 29, 2, p. 194-206 13 p.

Research output: Contribution to journalArticle

Photosynthesis
acclimation
photosynthesis
canopy
temperature

The influence of rising tropospheric carbon dioxide and ozone on plant productivity

Ainsworth, E. A., Lemonnier, P. & Wedow, J. M., Jan 1 2020, In : Plant Biology. 22, S1, p. 5-11 7 p.

Research output: Contribution to journalReview article

Open Access
ozone
carbon dioxide
productivity
terrestrial ecosystem
pollutants

The influence of seed source, Habitat and fungi on cecropia seed survival in two neotropical forests

Gallery, R. E., Dalling, J. W., Wolfe, B. T. & Arnold, A. E., Aug 30 2007, Seed Dispersal: Theory and its Application in a Changing World. CABI Publishing, p. 479-498 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Cecropia
tropical forests
Ecosystem
Seeds
Fungi

The inhibitor protein of phosphorylated nitrate reductase from spinach (Spinacia oleracea) leaves is a 14-3-3 protein

Bachmann, M., Huber, J. L., Liao, P. C., Gage, D. A. & Huber, S. C., Jun 3 1996, In : FEBS Letters. 387, 2-3, p. 127-131 5 p.

Research output: Contribution to journalArticle

14-3-3 Proteins
Nitrate Reductase
Spinacia oleracea
Proteins
Nitrate Reductase (NADH)

The involvement of the photoinhibition of photosystem II and impaired membrane energization in the reduced quantum yield of carbon assimilation in chilled maize

Ortiz-Lopez, A., Nie, G. Y., Ort, D. R. & Baker, N. R., Apr 1990, In : Planta. 181, 1, p. 78-84 7 p.

Research output: Contribution to journalArticle

Photosystem II Protein Complex
photoinhibition
photosystem II
Zea mays
Carbon

The Kalanchoë genome provides insights into convergent evolution and building blocks of crassulacean acid metabolism

Yang, X., Hu, R., Yin, H., Jenkins, J., Shu, S., Tang, H., Liu, D., Weighill, D. A., Cheol Yim, W., Ha, J., Heyduk, K., Goodstein, D. M., Guo, H. B., Moseley, R. C., Fitzek, E., Jawdy, S., Zhang, Z., Xie, M., Hartwell, J., Grimwood, J. & 29 others, Abraham, P. E., Mewalal, R., Beltrán, J. D., Boxall, S. F., Dever, L. V., Palla, K. J., Albion, R., Garcia, T., Mayer, J. A., Don Lim, S., Man Wai, C., Peluso, P., Van Buren, R., De Paoli, H. C., Borland, A. M., Guo, H., Chen, J. G., Muchero, W., Yin, Y., Jacobson, D. A., Tschaplinski, T. J., Hettich, R. L., Ming, R., Winter, K., Leebens-Mack, J. H., Smith, J. A. C., Cushman, J. C., Schmutz, J. & Tuskan, G. A., Dec 1 2017, In : Nature communications. 8, 1, 1899.

Research output: Contribution to journalArticle

genome
metabolism
Metabolism
Genes
Genome

The last interglacial to glacial transition, togiak bay, southwestern Alaska

Kaufman, D. S., Manley, W. F., Wolfe, A. P., Hu, F. S., Preece, S. J., Westgate, J. A. & Forman, S. L., Jan 1 2001, In : Quaternary Research. 55, 2, p. 190-202 13 p.

Research output: Contribution to journalArticle

Last Interglacial
oxygen isotope
silt
luminescence
tephra

The nitrogen budget of a pine forest under free air CO2 enrichment

Finzi, A. C., Delucia, E. H., Hamilton, J. G., Richter, D. D. & Schlesinger, W. H., Dec 1 2002, In : Oecologia. 132, 4, p. 567-578 12 p.

Research output: Contribution to journalArticle

net primary production
coniferous forests
carbon dioxide
primary productivity
air

The non-photochemical reduction of plastoquinone in leaves

Groom, Q. J., Kramer, D. M., Crofts, A. R. & Ort, D. R., Jun 1 1993, In : Photosynthesis research. 36, 3, p. 205-215 11 p.

Research output: Contribution to journalArticle

Plastoquinone
Amaranthus
malic enzyme
far-red light
photosystem I

The northern inland temperate rainforest of british columbia: Old forests with a young history?

Gavin, D. G., Hu, F. S., Walker, I. R. & Westover, K., Jan 1 2009, In : Northwest Science. 83, 1, p. 70-78 9 p.

Research output: Contribution to journalArticle

rainforest
British Columbia
rain forests
old-growth forest
old-growth forests

The origin of the non-recombining region of sex chromosomes in Carica and Vasconcellea

Wu, X., Wang, J., Na, J. K., Yu, Q., Moore, R. C., Zee, F., Huber, S. C. & Ming, R., Sep 1 2010, In : Plant Journal. 63, 5, p. 801-810 10 p.

Research output: Contribution to journalArticle

Vasconcellea
Carica
Sex Chromosomes
sex chromosomes
Alleles

The origins of C4 Grasslands: Integrating evolutionary and ecosystem science

Edwards, E. J., Osborne, C. P., Strömberg, C. A. E., Smith, S. A., Bond, W. J., Christin, P. A., Cousins, A. B., Duvall, M. R., Fox, D. L., Freckleton, R. P., Ghannoum, O., Hartwell, J., Huang, Y., Janis, C. M., Keeley, J. E., Kellogg, E. A., Knapp, A. K., Leakey, A. D. B., Nelson, D. M., Saarela, J. M. & 5 others, Sage, R. F., Sala, O. E., Salamin, N., Still, C. J. & Tipple, B., Apr 30 2010, In : Science. 328, 5978, p. 587-591 5 p.

Research output: Contribution to journalReview article

Ecosystem
Photosynthesis
Poaceae
Research
Grassland

The orphan gene ybjN conveys pleiotropic effects on multicellular behavior and survival of Escherichia coli

Wang, D., Calla, B., Vimolmangkang, S., Wu, X., Korban, S. S., Huber, S. C., Clough, S. J. & Zhao, Y., Sep 27 2011, In : PloS one. 6, 9, e25293.

Research output: Contribution to journalArticle

Escherichia coli
Genes
mutants
Acid resistance
acid tolerance

The papaya genome project: Fruitful insights, a decade later

Nguyen, J. K. & Ming, R., Jan 1 2019, In : Acta Horticulturae. 1250, p. 111-121 11 p.

Research output: Contribution to journalArticle

papayas
Y chromosome
genome
domestication
chromosomes

The phylogenetic position of Peucedanum sensu lato and allied genera and their placement in tribe Selineae (Apiaceae, subfamily Apioideae)

Spalik, K., Reduron, J. P. & Downie, S. R., Feb 1 2004, In : Plant Systematics and Evolution. 243, 3-4, p. 189-210 22 p.

Research output: Contribution to journalArticle

Peucedanum
Angelica
Apiaceae
Selinum
Arracacia
Heracleum
Apiaceae
Angelica
Fruit
fruit

The pineapple genome and the evolution of CAM photosynthesis

Ming, R., VanBuren, R., Wai, C. M., Tang, H., Schatz, M. C., Bowers, J. E., Lyons, E., Wang, M. L., Chen, J., Biggers, E., Zhang, J., Huang, L., Zhang, L., Miao, W., Zhang, J., Ye, Z., Miao, C., Lin, Z., Wang, H., Zhou, H. & 50 others, Yim, W. C., Priest, H. D., Zheng, C., Woodhouse, M., Edger, P. P., Guyot, R., Guo, H. B., Guo, H., Zheng, G., Singh, R., Sharma, A., Min, X., Zheng, Y., Lee, H., Gurtowski, J., Sedlazeck, F. J., Harkess, A., McKain, M. R., Liao, Z., Fang, J., Liu, J., Zhang, X., Zhang, Q., Hu, W., Qin, Y., Wang, K., Chen, L. Y., Shirley, N., Lin, Y. R., Liu, L. Y., Hernandez, A. G., Wright, C. L., Bulone, V., Tuskan, G. A., Heath, K., Zee, F., Moore, P. H., Sunkar, R., Leebens-Mack, J. H., Mockler, T., Bennetzen, J. L., Freeling, M., Sankoff, D., Paterson, A. H., Zhu, X., Yang, X., Smith, J. A. C., Cushman, J. C., Paull, R. E. & Yu, Q., Dec 1 2015, In : Nature Genetics. 47, 12, p. 1435-1442 8 p.

Research output: Contribution to journalArticle

Ananas
Photosynthesis
Genome
Acids
Circadian Clocks

The plastid casein kinase 2 phosphorylates rubisco activase at the Thr-78 site but is not essential for regulation of rubisco activation state

Kim, S. Y., Bender, K. W., Walker, B. J., Zielinski, R. E., Spalding, M. H., Ort, D. R. & Huber, S. C., Mar 31 2016, In : Frontiers in Plant Science. 7, MAR2016, 404.

Research output: Contribution to journalArticle

ribulose-bisphosphate carboxylase
threonine
plastids
phosphorylation
knockout mutants

The pomegranate (Punica granatum L.) genome and the genomics of punicalagin biosynthesis

Qin, G., Xu, C., Ming, R. R., Tang, H., Guyot, R., Kramer, E. M., Hu, Y., Yi, X., Qi, Y., Xu, X., Gao, Z., Pan, H., Jian, J., Tian, Y., Yue, Z. & Xu, Y., Sep 2017, In : Plant Journal. 91, 6, p. 1108-1128 21 p.

Research output: Contribution to journalArticle

Punicaceae
Punica granatum
Genomics
biosynthesis
Genome

The Possible Relation between a Membrane Conformational Change and Photosystem II Dependent Hydrogen Ion Accumulation and Adenosine 5′-Triphosphate Synthesis

Giaquinta, R. T., Ort, D. R. & Dilley, R. A., Oct 1 1975, In : Biochemistry. 14, 20, p. 4392-4396 5 p.

Research output: Contribution to journalArticle

Photosystem II Protein Complex
Plastoquinone
Adenosine
Protons
Adenosine Triphosphate