Research Output 1975 2020

Article

The Sorghum bicolor genome and the diversification of grasses

Paterson, A. H., Bowers, J. E., Bruggmann, R., Dubchak, I., Grimwood, J., Gundlach, H., Haberer, G., Hellsten, U., Mitros, T., Poliakov, A., Schmutz, J., Spannagl, M., Tang, H., Wang, X., Wicker, T., Bharti, A. K., Chapman, J., Feltus, F. A., Gowik, U., Grigoriev, I. V. & 25 others, Lyons, E., Maher, C. A., Martis, M., Narechania, A., Otillar, R. P., Penning, B. W., Salamov, A. A., Wang, Y., Zhang, L., Carpita, N. C., Freeling, M., Gingle, A. R., Hash, C. T., Keller, B., Klein, P., Kresovich, S., McCann, M. C., Ming, R., Peterson, D. G., Mehboob-Ur-Rahman, Ware, D., Westhoff, P., Mayer, K. F. X., Messing, J. & Rokhsar, D. S., Jan 29 2009, In : Nature. 457, 7229, p. 551-556 6 p.

Research output: Contribution to journalArticle

Sorghum
Poaceae
Genome
Genes
Genome Size

The Sugarcane Genome Challenge: Strategies for Sequencing a Highly Complex Genome

Souza, G. M., Berges, H., Bocs, S., Casu, R., D'Hont, A., Ferreira, J. E., Henry, R., Ming, R. R., Potier, B., Van Sluys, M. A., Vincentz, M. & Paterson, A. H., Dec 1 2011, In : Tropical Plant Biology. 4, 3-4, p. 145-156 12 p.

Research output: Contribution to journalArticle

Saccharum
sugarcane
Genome
genome
cultivars

The superposition principle

Berenbaum, M. R., Jan 1 2018, In : American Entomologist. 64, 4, p. 204-206 3 p.

Research output: Contribution to journalArticle

tephra
glacier
stratigraphy
Holocene
lake

The theoretical limit to plant productivity

Delucia, E. H., Gomez-Casanovas, N., Greenberg, J. A., Hudiburg, T. W., Kantola, I. B., Long, S. P., Miller, A. D., Ort, D. R. & Parton, W. J., Aug 19 2014, In : Environmental Science and Technology. 48, 16, p. 9471-9477 7 p.

Research output: Contribution to journalArticle

net primary production
Productivity
productivity
Crops
Biomass

The three maize sucrose synthase isoforms differ in distribution, localization, and phosphorylation

Duncan, K. A., Hardin, S. C. & Huber, S. C., Jul 1 2006, In : Plant and Cell Physiology. 47, 7, p. 959-971 13 p.

Research output: Contribution to journalArticle

sucrose synthase
Zea mays
phosphorylation
Protein Isoforms
Phosphorylation

The trendly tire tie

Berenbaum, M., Jan 1 2009, In : American Entomologist. 55, 3, p. 132-133 2 p.

Research output: Contribution to journalArticle

tires
tire

The unusual life history of Alseis blackiana: A shade-persistent pioneer tree?

Dalling, J. W., Winter, K., Nason, J. D., Hubbell, S. P., Murawski, D. A. & Hamrick, J. L., May 3 2001, In : Ecology. 82, 4, p. 933-945 13 p.

Research output: Contribution to journalArticle

pioneer species
shade
life history
seedling
seedlings

The utility of morphological characters for inferring phylogeny in Scandiceae subtribe Scandicinae (Apiaceae)

Spalik, K. & Downie, S. R., Jan 1 2001, In : Annals of the Missouri Botanical Garden. 88, 2, p. 270-301 32 p.

Research output: Contribution to journalArticle

Apiaceae
Anthriscus
Chaerophyllum
internal transcribed spacers
phylogeny

"This is your brain on bugs."

Berenbaum, M. R., Jan 1 1998, In : American Entomologist. 44, 3, p. 131-132 2 p.

Research output: Contribution to journalArticle

brain
bug
21st Century History
20th Century History
Entomology
Ecology
Germany

Threads across the urban fabric: Youth mentorship relationships as neighborhood bridges

Andris, C., Liu, X., Mitchell, J., O’Dwyer, J. & Van Cleve, J., Jan 1 2019, (Accepted/In press) In : Journal of Urban Affairs.

Research output: Contribution to journalArticle

assets
youth program
commuter
administrative boundary
mentoring

Threshold dynamics in soil carbon storage for bioenergy crops

Woo, D. K., Quijano, J. C., Kumar, P., Chaoka, S. & Bernacchi, C. J., Oct 21 2014, In : Environmental Science and Technology. 48, 20, p. 12090-12098 9 p.

Research output: Contribution to journalArticle

bioenergy
soil carbon
carbon sequestration
Crops
Nitrogen

Thylakoid membrane responses to moderately high leaf temperature in Pima cotton

Schrader, S. M., Wise, R. R., Wacholtz, W. F., Ort, D. R. & Sharkey, T. D., Jun 1 2004, In : Plant, Cell and Environment. 27, 6, p. 725-735 11 p.

Research output: Contribution to journalArticle

Potassium Iodide
Thylakoids
Oxygenases
thylakoids
Heating

Ticked off

Berenbaum, M. R., Jan 1 2014, In : American Entomologist. 60, 3, p. 131-134 4 p.

Research output: Contribution to journalArticle

Time dependent genetic analysis links field and controlled environment phenotypes in the model C4grass Setaria

Feldman, M. J., Paul, R. E., Banan, D., Barrett, J. F., Sebastian, J., Yee, M. C., Jiang, H., Lipka, A. E., Brutnell, T. P., Dinneny, J. R., Leakey, A. D. B. & Baxter, I., Jan 1 2017, In : PLoS genetics. 13, 6, e1006841.

Research output: Contribution to journalArticle

Setaria (Poaceae)
Controlled Environment
genetic analysis
genetic techniques and protocols
phenotype

Tissue differential expression of lycopene β-cyclase gene in papaya

Skelton, R. L., Yu, Q., Srinivasan, R., Manshardt, R., Moore, P. H. & Ming, R., Aug 1 2006, In : Cell Research. 16, 8, p. 731-739 9 p.

Research output: Contribution to journalArticle

Carica
Fruit
Genes
Bacterial Artificial Chromosomes
Carotenoids

Topographic position affects the water regime in a semideciduous tropical forest in Panamá

Daws, M. I., Mullins, C. E., Burslem, D. F. R. P., Paton, S. R. & Dalling, J. W., Jan 1 2002, In : Plant and Soil. 238, 1, p. 79-89 11 p.

Research output: Contribution to journalArticle

tropical forests
tropical forest
matric potential
drought
duration
Manihot
cassava
Photosynthesis
Carboxylation
cultivar

Towards a molecular phylogeny of Apiaceae subfamily Apioideae: Additional information from nuclear ribosomal DNA ITS sequences

Katz-Downie, D. S., Valiejo-Roman, C. M., Terentieva, E. I., Troitsky, A. V., Pimenov, M. G., Lee, B. & Downie, S. R., Jan 1 1999, In : Plant Systematics and Evolution. 216, 3-4, p. 167-195 29 p.

Research output: Contribution to journalArticle

Apiaceae
ribosomal DNA
phylogeny
nucleotide sequences
DNA
Apiaceae
Phylogeny
chloroplast DNA
Introns
introns

Toxicity of aflatoxin B1 to Helicoverpa zea and bioactivation by cytochrome P450 monooxygenases

Zeng, R. S. L., Niu, G., Wen, Z., Schuler, M. A. & Berenbaum, M. R., Dec 1 2006, In : Journal of Chemical Ecology. 32, 7, p. 1459-1471 13 p.

Research output: Contribution to journalArticle

Aflatoxin B1
Helicoverpa zea
aflatoxin B1
Mixed Function Oxygenases
cytochrome P-450

Toxicity of a furanocoumarin to armyworms: A case of biosynthetic escape from insect herbivores

Berenbaum, M., Jan 1 1978, In : Science. 201, 4355, p. 532-534 3 p.

Research output: Contribution to journalArticle

7-hydroxycoumarin
Herbivory
Insects
Apiaceae
Rutaceae

Toxicity of angular furanocoumarins to swallowtail butterflies: Escalation in a coevolutionary arms race?

Berenbaum, M. & Feeny, P., Jan 1 1981, In : Science. 212, 4497, p. 927-929 3 p.

Research output: Contribution to journalArticle

Apiaceae
Butterflies
Methoxsalen
Lepidoptera
Herbivory

Toxicity of mycotoxins to honeybees and its amelioration by propolis

Niu, G., Johnson, R. M. & Berenbaum, M. R., Jan 1 2011, In : Apidologie. 42, 1, p. 79-87 9 p.

Research output: Contribution to journalArticle

propolis
aflatoxin B1
mycotoxins
honey bees
toxicity

Toxicity of nonhost phototoxins to parsnip webworms (Lepidoptera: Oecophoridae)

Berenbaum, M. R. & Lee, K., Dec 1 1990, In : Chemoecology. 1, 3-4, p. 81-85 5 p.

Research output: Contribution to journalArticle

Depressaria pastinacella
Pastinaca
phototoxins
Oecophoridae
psoralens

Tracking Taphonomic Regimes Using Chemical and Mechanical Damage of Pollen and Spores: An Example from the Triassic-Jurassic Mass Extinction

Mander, L., Wesseln, C. J., McElwain, J. C. & Punyasena, S. W., Nov 7 2012, In : PloS one. 7, 11, e49153.

Research output: Contribution to journalArticle

Biological Extinction
mechanical damage
Pollen
Spores
extinction

Trait-based community assembly of understory palms along a soil nutrient gradient in a lower montane tropical forest

Andersen, K. M., Endara, M. J., Turner, B. L. & Dalling, J. W., Feb 1 2012, In : Oecologia. 168, 2, p. 519-531 13 p.

Research output: Contribution to journalArticle

montane forest
montane forests
soil nutrient
soil nutrients
tropical forests

Transcriptional profiling reveals elevated CO2 and elevated O3 alter resistance of soybean (Glycine max) to Japanese beetles (Popillia japonica)

Casteel, C. L., O'Neill, B. F., Zavala, J. A., Bilgin, D. D., Berenbaum, M. R. & DeLucia, E. H., Apr 1 2008, In : Plant, Cell and Environment. 31, 4, p. 419-434 16 p.

Research output: Contribution to journalArticle

Popillia japonica
Herbivory
Beetles
Soybeans
Glycine max

Transcriptional regulation of the Papilio polyxenes CYP6B1 gene

Prapaipong, H., Berenbaum, M. R. & Schuler, M. A., Aug 11 1994, In : Nucleic acids research. 22, 15, p. 3210-3217 8 p.

Research output: Contribution to journalArticle

Methoxsalen
Genes
Transcription Initiation Site
Ribonucleases
Isoenzymes

Transcriptional reprogramming and stimulation of leaf respiration by elevated CO2 concentration is diminished, but not eliminated, under limiting nitrogen supply

Markelz, R. J. C., Lai, L. X., Vosseler, L. N. & Leakey, A., Apr 1 2014, In : Plant, Cell and Environment. 37, 4, p. 886-898 13 p.

Research output: Contribution to journalArticle

cell respiration
Respiration
Nitrogen
nitrogen
leaves

Transcriptional response elements in the promoter of CYP6B1, an insect P450 gene regulated by plant chemicals

Petersen, R. A., Niamsup, H., Berenbaum, M. R. & Schuler, M. A., Feb 17 2003, In : Biochimica et Biophysica Acta - General Subjects. 1619, 3, p. 269-282 14 p.

Research output: Contribution to journalArticle

Insect Genes
Methoxsalen
Chemical plants
Response Elements
Transcription

Transcriptional responses indicate maintenance of photosynthetic proteins as key to the exceptional chilling tolerance of C4 photosynthesis in Miscanthus × giganteus

Spence, A. K., Boddu, J., Wang, D., James, B., Swaminathan, K., Moose, S. P. & Long, S. P., Jul 2014, In : Journal of experimental botany. 65, 13, p. 3737-3747 11 p.

Research output: Contribution to journalArticle

Miscanthus giganteus
C4 photosynthesis
Photosynthesis
Chlorophyll Binding Proteins
cold tolerance
Ecdysterone
Methoxsalen
ecdysterone
5' Untranslated Regions
5' untranslated regions

Transcriptome dynamics of Camellia sinensis in response to continuous salinity and drought stress

Zhang, Q., Cai, M., Yu, X., Wang, L., Guo, C., Ming, R. & Zhang, J., Aug 1 2017, In : Tree Genetics and Genomes. 13, 4, 78.

Research output: Contribution to journalArticle

Camellia sinensis
Droughts
drought stress
Salinity
Transcriptome

Transcriptome profiling revealed stress-induced and disease resistance genes up-regulated in PRSV resistant transgenic papaya

Fang, J., Lin, A., Qiu, W., Cai, H., Umar, M., Chen, R. & Ming, R., Jun 16 2016, In : Frontiers in Plant Science. 7, JUNE2016, 855.

Research output: Contribution to journalArticle

Papaya ringspot virus
induced resistance
papayas
transcriptomics
disease resistance

Transcriptomic analysis of transgressive segregants revealed the central role of photosynthetic capacity and efficiency in biomass accumulation in sugarcane

Singh, R., Jones, T., Wai, C. M., Jifon, J., Nagai, C., Ming, R. & Yu, Q., Dec 1 2018, In : Scientific reports. 8, 1, 4415.

Research output: Contribution to journalArticle

transcriptomics
sugarcane
biomass production
biomass
energy

Transphosphorylation of E. coli proteins during production of recombinant protein kinases provides a robust system to characterize kinase specificity

Wu, X., Oh, M. H., Kim, H. S., Schwartz, D., Imai, B. S., Yau, P. M., Clouse, S. D. & Huber, S. C., Nov 30 2012, In : Frontiers in Plant Science. 3, NOV, 262.

Research output: Contribution to journalArticle

recombinant proteins
protein kinases
brassinosteroids
phosphotransferases (kinases)
Escherichia coli

Transport in C4 mesophyll chloroplasts. Characterization of the pyruvate carrier

Huber, S. C. & Edwards, G. E., Dec 23 1977, In : BBA - Bioenergetics. 462, 3, p. 583-602 20 p.

Research output: Contribution to journalArticle

Chloroplasts
Pyruvic Acid
Valinomycin
Swelling
Potassium

Transport in C4 mesophyll chloroplasts. Evidence for an exchange of inorganic phosphate and phosphoenolpyruvate

Huber, S. C. & Edwards, G. E., Dec 23 1977, In : BBA - Bioenergetics. 462, 3, p. 603-612 10 p.

Research output: Contribution to journalArticle

Phosphoenolpyruvate
Chloroplasts
Phosphates
Pyruvic Acid
Digitaria

Tree of Sex: A database of sexual systems

Ashman, T. L., Bachtrog, D., Blackmon, H., Goldberg, E. E., Hahn, M. W., Kirkpatrick, M., Kitano, J., Mank, J. E., Mayrose, I., Ming, R., Otto, S. P., Peichel, C. L., Pennell, M. W., Perrin, N., Ross, L., Valenzuela, N. & Vamosi, J. C., Jun 24 2014, In : Scientific Data. 1, 140015.

Research output: Contribution to journalArticle

Chromosomes
Fish
Animals
Testing
Chromosome

Tribes and clades within apiaceae subfamily apioideae: The contribution of molecular data

Downie, S. R., Katz-Downie, D. S., Lee, B. Y., Plunkett, G. M., Watson, M. F., Spalik, K., Valiejo-Roman, C. M., Troitsky, A. V., Terentieva, E. I., Lahham, J. & El-Oqlah, A., Jan 1 2001, In : Edinburgh Journal of Botany. 58, 2, p. 301-330 30 p.

Research output: Contribution to journalArticle

Apiaceae
chloroplast
phylogeny
internal transcribed spacers
phylogenetics

Tripartite mutualism: facilitation or trade-offs between rhizobial and mycorrhizal symbionts of legume hosts

Ossler, J. N., Zielinski, C. A. & Heath, K. D., Aug 1 2015, In : American journal of botany. 102, 8, p. 1332-1341 10 p.

Research output: Contribution to journalArticle

Symbiosis
mutualism
facilitation
Rhizobium
symbiont

Tritrophic effects of xanthotoxin on the polyembryonic parasitoid Copidosoma sosares (Hymenoptera: Encyrtidae)

Lampert, E. C., Zangerl, A. R., Berenbaum, M. R. & Ode, P. J., Jun 1 2008, In : Journal of Chemical Ecology. 34, 6, p. 783-790 8 p.

Research output: Contribution to journalArticle

Copidosoma
methoxsalen
Methoxsalen
Encyrtidae
Hymenoptera

Tropical forest restoration: Tree islands as recruitment foci in degraded lands of Honduras

Zahawi, R. A. & Augspurger, C. K., Apr 1 2006, In : Ecological Applications. 16, 2, p. 464-478 15 p.

Research output: Contribution to journalArticle

tropical forest
pasture
seedling
land
restoration

Tropical Pacific climate variability over the last 6000 years as recorded in Bainbridge Crater Lake, Galápagos

Thompson, D. M., Conroy, J. L., Collins, A., Hlohowskyj, S. R., Overpeck, J. T., Riedinger-Whitmore, M., Cole, J. E., Bush, M. B., Whitney, H., Corley, T. L. & Kannan, M. S., Aug 2017, In : Paleoceanography. 32, 8, p. 903-922 20 p.

Research output: Contribution to journalArticle

crater lake
oscillation
temperature gradient
sea surface temperature
climate

Tropical understory piper shrubs maintain high levels of genotypic diversity despite frequent asexual recruitment

Lasso, E., Dalling, J. W. & Bermingham, E., Jan 1 2012, In : Biotropica. 44, 1, p. 35-43 9 p.

Research output: Contribution to journalArticle

Piper
understory
shrub
shrubs
shade

Try Tri again? Resolving species boundaries in the Lomatium triternatum (Apiaceae) complex

Smith, J. F., Mansfield, D. H., Stevens, M., Sosa, E., Feist, M. A. E., Downie, S. R., Plunkett, G. M. & Darrach, M., May 2018, In : Journal of Systematics and Evolution. 56, 3, p. 218-230 13 p.

Research output: Contribution to journalArticle

Lomatium
Apiaceae
phylogeny
species concept
niches

Tundra burning in Alaska: Linkages to climatic change and sea ice retreat

Hu, F. S., Higuera, P. E., Walsh, J. E., Chapman, W. L., Duffy, P. A., Brubaker, L. B. & Chipman, M. L., Dec 1 2010, In : Journal of Geophysical Research: Biogeosciences. 115, 4, G04002.

Research output: Contribution to journalArticle

tundra
ice retreat
Sea ice
sea ice
linkages

Tundra landform and vegetation productivity trend maps for the arctic coastal plain of Northern Alaska

Lara, M. J., Nitze, I., Grosse, G. & David McGuire, A., Apr 10 2018, In : Scientific Data. 5, 180058.

Research output: Contribution to journalArticle

Open Access
Geomorphology
Landforms
Hydrology
Vegetation
Arctic