Research Output

Article

Arabidopsis transcript and metabolite profiles: Ecotype-specific responses to open-air elevated [CO2]

Li, P., Ainsworth, E. A., Leakey, A. D. B., Ulanov, A., Lozovaya, V., Ort, D. R. & Bohnert, H. J., Nov 1 2008, In : Plant, Cell and Environment. 31, 11, p. 1673-1687 15 p.

Research output: Contribution to journalArticle

A realistic meteorological assessment of perennial biofuel crop deployment: a Southern Great Plains perspective

Wagner, M., Wang, M., Miguez-Macho, G., Miller, J., VanLoocke, A., Bagley, J. E., Bernacchi, C. J. & Georgescu, M., Jun 2017, In : GCB Bioenergy. 9, 6, p. 1024-1041 18 p.

Research output: Contribution to journalArticle

A regional comparison of water use efficiency for miscanthus, switchgrass and maize

VanLoocke, A., Twine, T. E., Zeri, M. & Bernacchi, C. J., Oct 15 2012, In : Agricultural and Forest Meteorology. 164, p. 82-95 14 p.

Research output: Contribution to journalArticle

Are some plant life forms more effective than others in screening out ultraviolet-B radiation?

Day, T. A., Vogelmann, T. C. & DeLucia, E. H., Dec 1 1992, In : Oecologia. 92, 4, p. 513-519 7 p.

Research output: Contribution to journalArticle

A retinoic acid binding cytochrome P450: CYP120A1 from Synechocystis sp. PCC 6803

Ke, N., Baudry, J., Makris, T. M., Schuler, M. A. & Sligar, S. G., Apr 1 2005, In : Archives of Biochemistry and Biophysics. 436, 1, p. 110-120 11 p.

Research output: Contribution to journalArticle

A review of global ocean temperature observations: Implications for ocean heat content estimates and climate change

Abraham, J. P., Baringer, M., Bindoff, N. L., Boyer, T., Cheng, L. J., Church, J. A., Conroy, J. L., Domingues, C. M., Fasullo, J. T., Gilson, J., Goni, G., Good, S. A., Gorman, J. M., Gouretski, V., Ishii, M., Johnson, G. C., Kizu, S., Lyman, J. M., Macdonald, A. M., Minkowycz, W. J. & 8 others, Moffitt, S. E., Palmer, M. D., Piola, A. R., Reseghetti, F., Schuckmann, K., Trenberth, K. E., Velicogna, I. & Willis, J. K., Sep 25 2013, In : Reviews of Geophysics. 51, 3, p. 450-483 34 p.

Research output: Contribution to journalArticle

Are we approaching a water ceiling to maize yields in the United States?

Delucia, E. H., Chen, S., Guan, K., Peng, B., Li, Y., Gomez-Casanovas, N., Kantola, I. B., Bernacchi, C., Huang, Y., Long, S. P. & Ort, D. R., Jun 18 2019, In : Ecosphere. 10, 6, e02773.

Research output: Contribution to journalArticle

Open Access

A robust plant rna isolation method suitable for affymetrix genechip analysis and quantitative real-time rt-pcr

Bilgin, D. D., Delucia, E. H. & Clough, S. J., Mar 2009, In : Nature Protocols. 4, 3, p. 333-340 8 p.

Research output: Contribution to journalArticle

Artefacts of the pot environment on soil nutrient availability: Implications for the interpretation of ecological studies

Dalling, J. W., Winter, K., Andersen, K. M. & Turner, B. L., Feb 11 2013, In : Plant Ecology. 214, 2, p. 329-338 10 p.

Research output: Contribution to journalArticle

Ascorbic and uric acid responses to xanthotoxin ingestion in a generalist and a specialist caterpillar

Timmermann, S. E., Zangerl, A. R. & Berenbaum, M. R., Sep 1999, In : Archives of Insect Biochemistry and Physiology. 42, 1, p. 26-36 11 p.

Research output: Contribution to journalArticle

A signal-to-noise index to quantify the potential for peak detection in sediment-charcoal records

Kelly, R. F., Higuera, P. E., Barrett, C. M. & Hu, F. S., Jan 1 2011, In : Quaternary Research. 75, 1, p. 11-17 7 p.

Research output: Contribution to journalArticle

Assembling allopolyploid genomes: No longer formidable

Ming, R. & Man Wai, C., Jan 31 2015, In : Genome biology. 16, 1, 27.

Research output: Contribution to journalArticle

Assembling and analysis of sanicula orthacantha chloroplast genome

Chen, Z., Yao, X., Downie, S. R. & Wang, Q., Apr 2019, In : Biodiversity Science. 27, 4, p. 366-372 7 p.

Research output: Contribution to journalArticle

Assembly of allele-aware, chromosomal-scale autopolyploid genomes based on Hi-C data

Zhang, X., Zhang, S., Zhao, Q., Ming, R. & Tang, H., Aug 1 2019, In : Nature Plants. 5, 8, p. 833-845 13 p.

Research output: Contribution to journalArticle

Assembly of the 373k gene space of the polyploid sugarcane genome reveals reservoirs of functional diversity in the world's leading biomass crop

Souza, G. M., Van Sluys, M. A., Lembke, C. G., Lee, H., Margarido, G. R. A., Hotta, C. T., Gaiarsa, J. W., Diniz, A. L., Oliveira, M. D. M., Ferreira, S. D. S., Nishiyama, M. Y., Ten-Caten, F., Ragagnin, G. T., Andrade, P. D. M., De Souza, R. F., Nicastro, G. G., Pandya, R., Kim, C., Guo, H., Durham, A. M. & 9 others, Carneiro, M. S., Zhang, J., Zhang, X., Zhang, Q., Ming, R., Schatz, M. C., Davidson, B., Paterson, A. H. & Heckerman, D., Dec 6 2019, In : GigaScience. 8, 12, giz129.

Research output: Contribution to journalArticle

Open Access

Assessing the potential to decrease the Gulf of Mexico hypoxic zone with Midwest US perennial cellulosic feedstock production

VanLoocke, A., Twine, T. E., Kucharik, C. J. & Bernacchi, C. J., May 1 2017, In : GCB Bioenergy. 9, 5, p. 858-875 18 p.

Research output: Contribution to journalArticle

Association between sucrose-phosphate synthase activity in leaves and plant growth rate in response to altered aerial temperature

Rufty, T. W., Huber, S. C. & Kerr, P. S., May 1985, In : Plant Science. 39, 1, p. 7-12 6 p.

Research output: Contribution to journalArticle

A stinging commentary

Berenbaum, M., Jun 1 2003, In : American Entomologist. 49, 2, p. 68-69 2 p.

Research output: Contribution to journalArticle

A subsidiary cell-localized glucose transporter promotes stomatal conductance and photosynthesis

Wang, H., Yan, S., Xin, H., Huang, W., Zhang, H., Teng, S., Yu, Y. C., Fernie, A. R., Lu, X., Li, P., Li, S., Zhang, C., Ruan, Y. L., Chen, L. Q. & Langa, Z., Jun 2019, In : Plant Cell. 31, 6, p. 1328-1343 16 p.

Research output: Contribution to journalArticle

A substrate-specific cytochrome P450 monooxygenase, CYP6AB11, from the polyphagous navel orangeworm (Amyelois transitella)

Niu, G., Rupasinghe, S. G., Zangerl, A. R., Siegel, J. P., Schuler, M. A. & Berenbaum, M. R., Apr 1 2011, In : Insect Biochemistry and Molecular Biology. 41, 4, p. 244-253 10 p.

Research output: Contribution to journalArticle

Asymmetric purine-pyrimidine distribution in cellular small RNA population of papaya

Aryal, R., Yang, X., Yu, Q., Sunkar, R., Li, L. & Ming, R., Dec 5 2012, In : BMC genomics. 13, 1, 682.

Research output: Contribution to journalArticle

A taxonomic comparison of local habitat niches of tropical trees

Baldeck, C. A., Kembel, S. W., Harms, K. E., Yavitt, J. B., John, R., Turner, B. L., Chuyong, G. B., Kenfack, D., Thomas, D. W., Madawala, S., Gunatilleke, N., Gunatilleke, S., Bunyavejchewin, S., Kiratiprayoon, S., Yaacob, A., Nur Supardi, M. N., Valencia, R., Navarrete, H., Davies, S. J., Hubbell, S. P. & 1 others, Dalling, J. W., Dec 1 2013, In : Oecologia. 173, 4, p. 1491-1498 8 p.

Research output: Contribution to journalArticle

A taxonomic revision of Capnophyllum (Apiaceae: Apioideae)

Magee, A. R., van Wyk, B. E., Tilney, P. M. & Downie, S. R., Apr 1 2009, In : South African Journal of Botany. 75, 2, p. 283-291 9 p.

Research output: Contribution to journalArticle

A taxonomic revision of the South African endemic genus Dasispermum (Apiaceae, Apioideae)

Magee, A. R., Van Wyk, B. E., Tilney, P. M. & Downie, S. R., Apr 1 2010, In : South African Journal of Botany. 76, 2, p. 308-323 16 p.

Research output: Contribution to journalArticle

A taxonomic study of the genus Hellenocarum H. Wolff (Umbelliferae-apioideae) based on morphology, fruit anatomy, and molecular data

Zakharova, E. A., Kljuykov, E. V., Degtjareva, G. V., Samigullin, T. H., Ukrainskaya, U. A. & Downie, S. R., Jan 1 2016, In : Turkish Journal of Botany. 40, 2, p. 176-193 18 p.

Research output: Contribution to journalArticle

A test of a field-based 15N-nitrous oxide pool dilution technique to measure gross N 2O production in soil

Yang, W. H., Teh, Y. A. & Silver, W. L., Dec 1 2011, In : Global change biology. 17, 12, p. 3577-3588 12 p.

Research output: Contribution to journalArticle

AtNIGT1/HRS1 integrates nitrate and phosphate signals at the Arabidopsis root tip

Medici, A., Marshall-Colon, A., Ronzier, E., Szponarski, W., Wang, R., Gojon, A., Crawford, N. M., Ruffel, S., Coruzzi, G. M. & Krouk, G., Feb 27 2015, In : Nature communications. 6, 6274.

Research output: Contribution to journalArticle

ATP-dependent activation of a new form of spinach leaf 6-phosphofructo-2-kinase/fructose2,6-bisphosphatase

Walker, G. H. & Huber, S. C., Oct 1987, In : Archives of Biochemistry and Biophysics. 258, 1, p. 58-64 7 p.

Research output: Contribution to journalArticle

AU-rich intronic elements affect pre-mRNA 5′ splice site selection in Drosophila melanogaster

Mccullough, A. J. & Schuler, M. A., Dec 1993, In : Molecular and cellular biology. 13, 12, p. 7689-7697 9 p.

Research output: Contribution to journalArticle

Automated detection of thermoerosion in permafrost ecosystems using temporally dense Landsat image stacks

Lara, M. J., Chipman, M. L. & Hu, F. S., Feb 2019, In : Remote Sensing of Environment. 221, p. 462-473 12 p.

Research output: Contribution to journalArticle

Autophosphorylation-based calcium (Ca2+) sensitivity priming and Ca2+/calmodulin inhibition of Arabidopsis thaliana Ca2+-dependent protein kinase 28 (CPK28)

Bender, K. W., Blackburn, R. K., Monaghan, J., Derbyshire, P., Menke, F. L. H., Zipfel, C., Goshe, M. B., Zielinski, R. E. & Huber, S. C., Mar 10 2017, In : Journal of Biological Chemistry. 292, 10, p. 3988-4002 15 p.

Research output: Contribution to journalArticle

Autophosphorylation of Tyr-610 in the receptor kinase BAK1 plays a role in brassinosteroid signaling and basal defense gene expression

Oh, M. H., Wang, X., Wu, X., Zhao, Y., Clouse, S. D. & Huber, S. C., Oct 12 2010, In : Proceedings of the National Academy of Sciences of the United States of America. 107, 41, p. 17827-17832 6 p.

Research output: Contribution to journalArticle

Autotoxic effects of essential oils on photosynthesis in parsley, parsnip, and rough lemon

Gog, L., Berenbaum, M. R., DeLucia, E. H. & Zangerl, A. R., Jun 1 2005, In : Chemoecology. 15, 2, p. 115-119 5 p.

Research output: Contribution to journalArticle

Auxin regulation involved in gynoecium morphogenesis of papaya flowers

Zhou, P., Fatima, M., Ma, X., Liu, J. & Ming, R., Dec 1 2019, In : Horticulture Research. 6, 1, 119.

Research output: Contribution to journalArticle

Open Access

A wish list for synthetic biology in photosynthesis research

Zhu, X. G., Ort, D. R., Parry, M. A. J. & Von Caemmerer, S., Apr 6 2020, In : Journal of experimental botany. 71, 7, p. 2219-2225 7 p.

Research output: Contribution to journalArticle

Open Access

A ∼33,000 year record of environmental change from Arolik Lake, Ahklun Mountains, Alaska, USA

Kaufman, D. S., Hu, F. S., Briner, J. P., Werner, A., Finney, B. P. & Gregory-Eaves, I., Nov 2003, In : Journal of Paleolimnology. 30, 4, p. 343-361 19 p.

Research output: Contribution to journalArticle

Backbones of evolutionary history test biodiversity theory for microbes

O'Dwyer, J. P., Kembel, S. W., Sharpton, T. J. & Pacala, S. W., Jul 7 2015, In : Proceedings of the National Academy of Sciences of the United States of America. 112, 27, p. 8356-8361 6 p.

Research output: Contribution to journalArticle

Bacterial diversity and distribution in the holocene sediments of a northern temperate lake

Nelson, D. M., Ohene-Adjei, S., Hu, F. S., Cann, I. & Mackie, R. I., Aug 1 2007, In : Microbial Ecology. 54, 2, p. 252-263 12 p.

Research output: Contribution to journalArticle

Balancing selection contributed to domestication of autopolyploid sugarcane (Saccharum officinarum L.)

Arro, J., Park, J. W., Wai, C. M., VanBuren, R., Pan, Y. B., Nagai, C., da Silva, J. & Ming, R. R., May 1 2016, In : Euphytica. 209, 2, p. 477-493 17 p.

Research output: Contribution to journalArticle

B-class MADS-box genes in trioecious papaya: Two paleoAP3 paralogs, CpTM6-1 and CpTM6-2, and a PI ortholog CpPI

Ackerman, C. M., Yu, Q., Kim, S., Paull, R. E., Moore, P. H. & Ming, R., Mar 1 2008, In : Planta. 227, 4, p. 741-753 13 p.

Research output: Contribution to journalArticle

Bee my symbol of affection

Berenbaum, M., Mar 1 2012, In : American Entomologist. 58, 1, p. 4-6 3 p.

Research output: Contribution to journalArticle

Bees in bonnets (and purses)

Berenbaum, M., Jun 1 2015, In : American Entomologist. 61, 2, p. 69-71 3 p.

Research output: Contribution to journalArticle

Beespotter at the University of Illinois

Berenbaum, M. R., Mar 1 2012, In : American Entomologist. 58, 1, p. 25-28 4 p.

Research output: Contribution to journalArticle

Behavioral effects of carotenoid sequestration by the parsnip webworm, Depressaria pastinacella

Carroll, M., Hanlon, A., Hanlon, T., Zangerl, A. R. & Berenbaum, M. R., Jan 1 1997, In : Journal of Chemical Ecology. 23, 12, p. 2707-2719 13 p.

Research output: Contribution to journalArticle

Behavioral responses of honey bees (Apis mellifera) to natural and synthetic xenobiotics in food

Liao, L. H., Wu, W. Y. & Berenbaum, M. R., Dec 1 2017, In : Scientific reports. 7, 1, 15924.

Research output: Contribution to journalArticle

Behavioral responses of the parsnip webworm to host plant volatiles

Carroll, M. J. & Berenbaum, M. R., Nov 1 2002, In : Journal of Chemical Ecology. 28, 11, p. 2191-2201 11 p.

Research output: Contribution to journalArticle

Benefits of trenching behavior in the context of an inducible defense

Chambers, J. L. E., Berenbaum, M. R. & Zangerl, A. R., Sep 2007, In : Chemoecology. 17, 3, p. 125-130 6 p.

Research output: Contribution to journalArticle