Research Output 1975 2020

Article

Are we approaching a water ceiling to maize yields in the United States?

Delucia, E. H., Chen, S., Guan, K., Peng, B., Li, Y., Gomez-Casanovas, N., Kantola, I. B., Bernacchi, C., Huang, Y., Long, S. P. & Ort, D. R., Jun 18 2019, In : Ecosphere. 10, 6, e02773.

Research output: Contribution to journalArticle

Open Access
maize
corn
vapor pressure
water
water use efficiency

A robust plant rna isolation method suitable for affymetrix genechip analysis and quantitative real-time rt-pcr

Bilgin, D. D., Delucia, E. H. & Clough, S. J., Mar 2009, In : Nature Protocols. 4, 3, p. 333-340 8 p.

Research output: Contribution to journalArticle

Plant RNA
RNA
Real-Time Polymerase Chain Reaction
Throughput
Plant Preparations
tundra
ecosystems
Ecosystems
near infrared
Fires

Artefacts of the pot environment on soil nutrient availability: Implications for the interpretation of ecological studies

Dalling, J. W., Winter, K., Andersen, K. M. & Turner, B. L., Feb 11 2013, In : Plant Ecology. 214, 2, p. 329-338 10 p.

Research output: Contribution to journalArticle

nutrient availability
soil nutrient
soil nutrients
artifact
soil conditioners

Ascorbic and uric acid responses to xanthotoxin ingestion in a generalist and a specialist caterpillar

Timmermann, S. E., Zangerl, A. R. & Berenbaum, M. R., Sep 1999, In : Archives of Insect Biochemistry and Physiology. 42, 1, p. 26-36 11 p.

Research output: Contribution to journalArticle

methoxsalen
Methoxsalen
uric acid
Uric Acid
Ascorbic Acid

A signal-to-noise index to quantify the potential for peak detection in sediment-charcoal records

Kelly, R. F., Higuera, P. E., Barrett, C. M. & Hu, F. S., Jan 1 2011, In : Quaternary Research. 75, 1, p. 11-17 7 p.

Research output: Contribution to journalArticle

charcoal
sediment
fire history
lacustrine deposit
detection

Assembling allopolyploid genomes: No longer formidable

Ming, R. R. & Man Wai, C., Jan 31 2015, In : Genome biology. 16, 1, 27.

Research output: Contribution to journalArticle

allopolyploidy
genome
Genome
Chromosome Mapping
Firearms

Assembling and analysis of sanicula orthacantha chloroplast genome

Chen, Z., Yao, X., Downie, S. R. & Wang, Q., Apr 2019, In : Biodiversity Science. 27, 4, p. 366-372 7 p.

Research output: Contribution to journalArticle

Sanicula
chloroplast
genome
gene
genes

Assembly of allele-aware, chromosomal-scale autopolyploid genomes based on Hi-C data

Zhang, X., Zhang, S., Zhao, Q., Ming, R. & Tang, H., Aug 1 2019, In : Nature Plants. 5, 8, p. 833-845 13 p.

Research output: Contribution to journalArticle

autopolyploidy
alleles
genome
chromosomes
diploidy

Assembly of the 373k gene space of the polyploid sugarcane genome reveals reservoirs of functional diversity in the world's leading biomass crop

Souza, G. M., Van Sluys, M. A., Lembke, C. G., Lee, H., Margarido, G. R. A., Hotta, C. T., Gaiarsa, J. W., Diniz, A. L., Oliveira, M. D. M., Ferreira, S. D. S., Nishiyama, M. Y., Ten-Caten, F., Ragagnin, G. T., Andrade, P. D. M., De Souza, R. F., Nicastro, G. G., Pandya, R., Kim, C., Guo, H., Durham, A. M. & 9 others, Carneiro, M. S., Zhang, J., Zhang, X., Zhang, Q., Ming, R., Schatz, M. C., Davidson, B., Paterson, A. H. & Heckerman, D., Dec 6 2019, In : GigaScience. 8, 12, giz129.

Research output: Contribution to journalArticle

Open Access
Saccharum
Polyploidy
Biomass
Crops
Genes

Assessing the potential to decrease the Gulf of Mexico hypoxic zone with Midwest US perennial cellulosic feedstock production

VanLoocke, A., Twine, T. E., Kucharik, C. J. & Bernacchi, C. J., May 1 2017, In : GCB Bioenergy. 9, 5, p. 858-875 18 p.

Research output: Contribution to journalArticle

Miscanthus
dissolved inorganic nitrogen
feedstocks
Panicum virgatum
Gulf of Mexico

Association between sucrose-phosphate synthase activity in leaves and plant growth rate in response to altered aerial temperature

Rufty, T. W., Huber, S. C. & Kerr, P. S., May 1985, In : Plant Science. 39, 1, p. 7-12 6 p.

Research output: Contribution to journalArticle

sucrose-phosphate synthase
Plant Leaves
plant growth
Temperature
Growth

A stinging commentary

Berenbaum, M., Jun 1 2003, In : American Entomologist. 49, 2, p. 68-69 2 p.

Research output: Contribution to journalArticle

stinging

A subsidiary cell-localized glucose transporter promotes stomatal conductance and photosynthesis

Wang, H., Yan, S., Xin, H., Huang, W., Zhang, H., Teng, S., Yu, Y. C., Fernie, A. R., Lu, X., Li, P., Li, S., Zhang, C., Ruan, Y. L., Chen, L. Q. & Langa, Z., Jun 2019, In : Plant Cell. 31, 6, p. 1328-1343 16 p.

Research output: Contribution to journalArticle

glucose transporters
Facilitative Glucose Transport Proteins
Photosynthesis
stomatal conductance
Clustered Regularly Interspaced Short Palindromic Repeats

A substrate-specific cytochrome P450 monooxygenase, CYP6AB11, from the polyphagous navel orangeworm (Amyelois transitella)

Niu, G., Rupasinghe, S. G., Zangerl, A. R., Siegel, J. P., Schuler, M. A. & Berenbaum, M. R., Apr 1 2011, In : Insect Biochemistry and Molecular Biology. 41, 4, p. 244-253 10 p.

Research output: Contribution to journalArticle

Amyelois transitella
piperonyl butoxide
synergists
Mixed Function Oxygenases
Piperonyl Butoxide

Asymmetric purine-pyrimidine distribution in cellular small RNA population of papaya

Aryal, R., Yang, X., Yu, Q., Sunkar, R., Li, L. & Ming, R., Dec 5 2012, In : BMC genomics. 13, 1, 682.

Research output: Contribution to journalArticle

Carica
MicroRNAs
RNA
Population
Ribonuclease III

A taxonomic comparison of local habitat niches of tropical trees

Baldeck, C. A., Kembel, S. W., Harms, K. E., Yavitt, J. B., John, R., Turner, B. L., Chuyong, G. B., Kenfack, D., Thomas, D. W., Madawala, S., Gunatilleke, N., Gunatilleke, S., Bunyavejchewin, S., Kiratiprayoon, S., Yaacob, A., Nur Supardi, M. N., Valencia, R., Navarrete, H., Davies, S. J., Hubbell, S. P. & 1 others, Dalling, J. W., Dec 1 2013, In : Oecologia. 173, 4, p. 1491-1498 8 p.

Research output: Contribution to journalArticle

niche
niches
habitat
habitats
niche overlap

A taxonomic revision of Capnophyllum (Apiaceae: Apioideae)

Magee, A. R., van Wyk, B. E., Tilney, P. M. & Downie, S. R., Apr 1 2009, In : South African Journal of Botany. 75, 2, p. 283-291 9 p.

Research output: Contribution to journalArticle

Capnophyllum
Apiaceae
taxonomic revisions
fruits
ribs

A taxonomic revision of the South African endemic genus Dasispermum (Apiaceae, Apioideae)

Magee, A. R., Van Wyk, B. E., Tilney, P. M. & Downie, S. R., Apr 1 2010, In : South African Journal of Botany. 76, 2, p. 308-323 16 p.

Research output: Contribution to journalArticle

Apiaceae
taxonomic revisions
fruits
leaves
bracts

A taxonomic study of the genus Hellenocarum H. Wolff (Umbelliferae-apioideae) based on morphology, fruit anatomy, and molecular data

Zakharova, E. A., Kljuykov, E. V., Degtjareva, G. V., Samigullin, T. H., Ukrainskaya, U. A. & Downie, S. R., Jan 1 2016, In : Turkish Journal of Botany. 40, 2, p. 176-193 18 p.

Research output: Contribution to journalArticle

Apiaceae
intergenic DNA
fruits
Carum
herbaria

A test of a field-based 15N-nitrous oxide pool dilution technique to measure gross N 2O production in soil

Yang, W. H., Teh, Y. A. & Silver, W. L., Dec 1 2011, In : Global change biology. 17, 12, p. 3577-3588 12 p.

Research output: Contribution to journalArticle

Nitrous Oxide
nitrous oxide
Dilution
dilution
Soils

AtNIGT1/HRS1 integrates nitrate and phosphate signals at the Arabidopsis root tip

Medici, A., Marshall-Colon, A., Ronzier, E., Szponarski, W., Wang, R., Gojon, A., Crawford, N. M., Ruffel, S., Coruzzi, G. M. & Krouk, G., Feb 27 2015, In : Nature communications. 6, 6274.

Research output: Contribution to journalArticle

Meristem
Arabidopsis
Nitrates
Global Atmospheric Research Program
nitrates

ATP-dependent activation of a new form of spinach leaf 6-phosphofructo-2-kinase/fructose2,6-bisphosphatase

Walker, G. H. & Huber, S. C., Oct 1987, In : Archives of Biochemistry and Biophysics. 258, 1, p. 58-64 7 p.

Research output: Contribution to journalArticle

Phosphofructokinase-2
Spinacia oleracea
Adenosine Triphosphate
Chemical activation
Enzyme Activation

AU-rich intronic elements affect pre-mRNA 5′ splice site selection in Drosophila melanogaster

Mccullough, A. J. & Schuler, M. A., Dec 1993, In : Molecular and cellular biology. 13, 12, p. 7689-7697 9 p.

Research output: Contribution to journalArticle

AU Rich Elements
RNA Splice Sites
RNA Precursors
Drosophila melanogaster
Introns
Climate Change
Photosynthesis
Atmosphere
Biochemistry
biochemistry

Automated detection of thermoerosion in permafrost ecosystems using temporally dense Landsat image stacks

Lara, M. J., Chipman, M. L. & Hu, F. S., Feb 2019, In : Remote Sensing of Environment. 221, p. 462-473 12 p.

Research output: Contribution to journalArticle

Permafrost
permafrost
Landsat
Ecosystems
Lakes

Autophosphorylation-based calcium (Ca 2+ ) sensitivity priming and Ca 2+ /calmodulin inhibition of Arabidopsis thaliana Ca 2+ -dependent protein kinase 28 (CPK28)

Bender, K. W., Blackburn, R. K., Monaghan, J., Derbyshire, P., Menke, F. L. H., Zipfel, C., Goshe, M. B., Zielinski, R. E. & Huber, S. C., Mar 10 2017, In : Journal of Biological Chemistry. 292, 10, p. 3988-4002 15 p.

Research output: Contribution to journalArticle

Calmodulin
Arabidopsis
Protein Kinases
Calcium
Phosphotransferases

Autophosphorylation of Tyr-610 in the receptor kinase BAK1 plays a role in brassinosteroid signaling and basal defense gene expression

Oh, M. H., Wang, X., Wu, X., Zhao, Y., Clouse, S. D. & Huber, S. C., Oct 12 2010, In : Proceedings of the National Academy of Sciences of the United States of America. 107, 41, p. 17827-17832 6 p.

Research output: Contribution to journalArticle

Brassinosteroids
Phosphotransferases
Gene Expression
Phosphorylation
Pseudomonas syringae

Autotoxic effects of essential oils on photosynthesis in parsley, parsnip, and rough lemon

Gog, L., Berenbaum, M. R., DeLucia, E. H. & Zangerl, A. R., Jun 1 2005, In : Chemoecology. 15, 2, p. 115-119 5 p.

Research output: Contribution to journalArticle

Pastinaca
parsnips
Petroselinum
Citrus jambhiri
parsley
Tilia americana var. heterophylla
Alnus
photosynthesis
nitrogen
fixation

Auxin regulation involved in gynoecium morphogenesis of papaya flowers

Zhou, P., Fatima, M., Ma, X., Liu, J. & Ming, R., Dec 1 2019, In : Horticulture Research. 6, 1, 119.

Research output: Contribution to journalArticle

Open Access
Carica
gynoecium
Indoleacetic Acids
papayas
Morphogenesis

A ∼33,000 year record of environmental change from Arolik Lake, Ahklun Mountains, Alaska, USA

Kaufman, D. S., Hu, F. S., Briner, J. P., Werner, A., Finney, B. P. & Gregory-Eaves, I., Nov 2003, In : Journal of Paleolimnology. 30, 4, p. 343-361 19 p.

Research output: Contribution to journalArticle

Silicon Dioxide
silica
Biological materials
Lakes
environmental change

Backbones of evolutionary history test biodiversity theory for microbes

O'Dwyer, J. P., Kembel, S. W., Sharpton, T. J. & Pacala, S. W., Jul 7 2015, In : Proceedings of the National Academy of Sciences of the United States of America. 112, 27, p. 8356-8361 6 p.

Research output: Contribution to journalArticle

Biodiversity
History
Ecology
Ecosystem
Theoretical Models

Bacterial diversity and distribution in the holocene sediments of a northern temperate lake

Nelson, D. M., Ohene-Adjei, S., Hu, F. S., Cann, I. & Mackie, R. I., Aug 1 2007, In : Microbial Ecology. 54, 2, p. 252-263 12 p.

Research output: Contribution to journalArticle

Denaturing Gradient Gel Electrophoresis
Lakes
Holocene
Bacterial Structures
lakes

Balancing selection contributed to domestication of autopolyploid sugarcane (Saccharum officinarum L.)

Arro, J., Park, J. W., Wai, C. M., VanBuren, R., Pan, Y. B., Nagai, C., da Silva, J. & Ming, R. R., May 1 2016, In : Euphytica. 209, 2, p. 477-493 17 p.

Research output: Contribution to journalArticle

autopolyploidy
Saccharum
Saccharum officinarum
domestication
sugarcane

B-class MADS-box genes in trioecious papaya: Two paleoAP3 paralogs, CpTM6-1 and CpTM6-2, and a PI ortholog CpPI

Ackerman, C. M., Yu, Q., Kim, S., Paull, R. E., Moore, P. H. & Ming, R. R., Mar 1 2008, In : Planta. 227, 4, p. 741-753 13 p.

Research output: Contribution to journalArticle

Carica
papayas
Genes
flowers
genes

Bee my symbol of affection

Berenbaum, M. R., Mar 1 2012, In : American Entomologist. 58, 1, p. 4-6 3 p.

Research output: Contribution to journalArticle

bee
Apoidea

Bees in bonnets (and purses)

Berenbaum, M., Jun 1 2015, In : American Entomologist. 61, 2, p. 69-71 3 p.

Research output: Contribution to journalArticle

bee
Apoidea

Beespotter at the University of Illinois

Berenbaum, M. R., Mar 1 2012, In : American Entomologist. 58, 1, p. 25-28 4 p.

Research output: Contribution to journalArticle

Behavioral effects of carotenoid sequestration by the parsnip webworm, Depressaria pastinacella

Carroll, M., Hanlon, A., Hanlon, T., Zangerl, A. R. & Berenbaum, M. R., Jan 1 1997, In : Journal of Chemical Ecology. 23, 12, p. 2707-2719 13 p.

Research output: Contribution to journalArticle

Depressaria pastinacella
Pastinaca
caterpillar
Carotenoids
Nutrition

Behavioral responses of honey bees (Apis mellifera) to natural and synthetic xenobiotics in food

Liao, L. H., Wu, W. Y. & Berenbaum, M. R., Dec 1 2017, In : Scientific reports. 7, 1, 15924.

Research output: Contribution to journalArticle

xenobiotics
Apis mellifera
honey bees
phytopharmaceuticals
Apoidea

Behavioral responses of the parsnip webworm to host plant volatiles

Carroll, M. J. & Berenbaum, M. R., Nov 1 2002, In : Journal of Chemical Ecology. 28, 11, p. 2191-2201 11 p.

Research output: Contribution to journalArticle

Depressaria pastinacella
Pastinaca
behavioral response
host plant
acetate

Benefits of trenching behavior in the context of an inducible defense

Chambers, J. L. E., Berenbaum, M. R. & Zangerl, A. R., Sep 2007, In : Chemoecology. 17, 3, p. 125-130 6 p.

Research output: Contribution to journalArticle

Pastinaca
parsnips
Trenching
trenching
psoralens

BETYdb: a yield, trait, and ecosystem service database applied to second-generation bioenergy feedstock production

LeBauer, D., Kooper, R., Mulrooney, P., Rohde, S., Wang, D., Long, S. P. & Dietze, M. C., Jan 2018, In : GCB Bioenergy. 10, 1, p. 61-71 11 p.

Research output: Contribution to journalArticle

bioenergy
Biofuels
feedstocks
biofuels
biofuel

Beyond an ecological ideal gas law

O’Dwyer, J. P., Jan 1 2019, (Accepted/In press) In : Nature Ecology and Evolution.

Research output: Contribution to journalArticle

Beyond carbon and nitrogen: How the microbial energy economy couples elemental cycles in diverse ecosystems

Burgin, A. J., Yang, W. H., Hamilton, S. K. & Silver, W. L., Feb 1 2011, In : Frontiers in Ecology and the Environment. 9, 1, p. 44-52 9 p.

Research output: Contribution to journalArticle

biogeochemical cycle
biogeochemical cycles
ecosystems
carbon
ecosystem

Bicistronic and fused monocistronic transcripts are derived from adjacent loci in the Arabidopsis genome

Thimmapuram, J., Duan, H., Liu, L. & Schuler, M. A., Feb 1 2005, In : RNA. 11, 2, p. 128-138 11 p.

Research output: Contribution to journalArticle

Intergenic DNA
Arabidopsis
Open Reading Frames
Complementary DNA
Genome

Bile acid sodium symporter BASS6 can transport glycolate and is involved in photorespiratory metabolism in Arabidopsis thaliana

South, P. F., Walker, B. J., Cavanagh, A. P., Rolland, V., Badger, M. & Ort, D. R., Apr 2017, In : Plant Cell. 29, 4, p. 808-823 16 p.

Research output: Contribution to journalArticle

glycolic acid
symporters
Symporters
photorespiration
bile acids

Billburttia, a new genus of Apiaceae (tribe Apieae) endemic to Madagascar

Magee, A. R., van Wyk, B. E., Tilney, P. M., Sales, F., Hedge, I. & Downie, S. R., Oct 13 2009, In : Plant Systematics and Evolution. 283, 3, p. 237-245 9 p.

Research output: Contribution to journalArticle

Peucedanum
Apiaceae
Madagascar
new genus
fruit
Acclimatization
Soybeans
Glycine max
acclimation
carbon dioxide