Research Output

2019

Rethinking long-term vegetation dynamics: multiple glacial refugia and local expansion of a species complex

Napier, J. D., de Lafontaine, G., Heath, K. D. & Hu, F. S., May 2019, In : Ecography. 42, 5, p. 1056-1067 12 p.

Research output: Contribution to journalArticle

Safer food through plant science: Reducing toxic element accumulation in crops

Clemens, S. & Ort, D., Oct 24 2019, In : Journal of experimental botany. 70, 20, p. 5537-5557 21 p.

Research output: Contribution to journalReview article

Open Access

Siberian Miscanthus sacchariflorus accessions surpass the exceptional chilling tolerance of the most widely cultivated clone of Miscanthus x giganteus

Pignon, C. P., Spitz, I., Sacks, E. J., Jørgensen, U., Kørup, K. & Long, S. P., Jul 2019, In : GCB Bioenergy. 11, 7, p. 883-894 12 p.

Research output: Contribution to journalArticle

Open Access

Soil and species effects on bark nutrient storage in a premontane tropical forest

Jones, J. M., Heineman, K. D. & Dalling, J. W., Jan 1 2019, In : Plant and Soil.

Research output: Contribution to journalArticle

Spatial scale affects novel and disappeared climate change projections in Alaska

Morrison, B. D., Heath, K. & Greenberg, J. A., Nov 1 2019, In : Ecology and Evolution. 9, 21, p. 12026-12044 19 p.

Research output: Contribution to journalArticle

Open Access

Speaking of gender bias

Berenbaum, M. R., Apr 23 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 17, p. 8086-8088 3 p.

Research output: Contribution to journalReview article

Open Access

Species-specific effects of phosphorus addition on tropical tree seedling response to elevated CO2

Thompson, J. B., Slot, M., Dalling, J. W., Winter, K., Turner, B. L. & Zalamea, P. C., Oct 1 2019, In : Functional Ecology. 33, 10, p. 1871-1881 11 p.

Research output: Contribution to journalArticle

Synthetic glycolate metabolism pathways stimulate crop growth and productivity in the field

South, P. F., Cavanagh, A. P., Liu, H. W. & Ort, D. R., Jan 4 2019, In : Science. 363, 6422, eaat9077.

Research output: Contribution to journalArticle

Target enrichment sequencing of 307 germplasm accessions identified ancestry of ancient and modern hybrids and signatures of adaptation and selection in sugarcane (Saccharum spp.), a ‘sweet’ crop with ‘bitter’ genomes

Yang, X., Song, J., Todd, J., Peng, Z., Paudel, D., Luo, Z., Ma, X., You, Q., Hanson, E., Zhao, Z., Zhao, Y., Zhang, J., Ming, R. & Wang, J., Feb 1 2019, In : Plant Biotechnology Journal. 17, 2, p. 488-498 11 p.

Research output: Contribution to journalArticle

The bracteatus pineapple genome and domestication of clonally propagated crops

Chen, L. Y., VanBuren, R., Paris, M., Zhou, H., Zhang, X., Wai, C. M., Yan, H., Chen, S., Alonge, M., Ramakrishnan, S., Liao, Z., Liu, J., Lin, J., Yue, J., Fatima, M., Lin, Z., Zhang, J., Huang, L., Wang, H., Hwa, T. Y. & 25 others, Kao, S. M., Choi, J. Y., Sharma, A., Song, J., Wang, L., Yim, W. C., Cushman, J. C., Paull, R. E., Matsumoto, T., Qin, Y., Wu, Q., Wang, J., Yu, Q., Wu, J., Zhang, S., Boches, P., Tung, C. W., Wang, M. L., Coppens d’Eeckenbrugge, G., Sanewski, G. M., Purugganan, M. D., Schatz, M. C., Bennetzen, J. L., Lexer, C. & Ming, R., Oct 1 2019, In : Nature Genetics. 51, 10, p. 1549-1558 10 p.

Research output: Contribution to journalArticle

Open Access

The complete chloroplast genome of a gynodioecious deciduous orchid Satyrium ciliatum (Orchidaceae) female

Ma, X., Lin, H., Chen, Y., Lan, S. & Ming, R., Jul 3 2019, In : Mitochondrial DNA Part B: Resources. 4, 2, p. 3876-3877 2 p.

Research output: Contribution to journalArticle

Open Access

The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication

Zhuang, W., Chen, H., Yang, M., Wang, J., Pandey, M. K., Zhang, C., Chang, W. C., Zhang, L., Zhang, X., Tang, R., Garg, V., Wang, X., Tang, H., Chow, C. N., Wang, J., Deng, Y., Wang, D., Khan, A. W., Yang, Q., Cai, T. & 58 others, Bajaj, P., Wu, K., Guo, B., Zhang, X., Li, J., Liang, F., Hu, J., Liao, B., Liu, S., Chitikineni, A., Yan, H., Zheng, Y., Shan, S., Liu, Q., Xie, D., Wang, Z., Khan, S. A., Ali, N., Zhao, C., Li, X., Luo, Z., Zhang, S., Zhuang, R., Peng, Z., Wang, S., Mamadou, G., Zhuang, Y., Zhao, Z., Yu, W., Xiong, F., Quan, W., Yuan, M., Li, Y., Zou, H., Xia, H., Zha, L., Fan, J., Yu, J., Xie, W., Yuan, J., Chen, K., Zhao, S., Chu, W., Chen, Y., Sun, P., Meng, F., Zhuo, T., Zhao, Y., Li, C., He, G., Zhao, Y., Wang, C., Kavikishor, P. B., Pan, R. L., Paterson, A. H., Wang, X., Ming, R. & Varshney, R. K., May 1 2019, In : Nature Genetics. 51, 5, p. 865-876 12 p.

Research output: Contribution to journalArticle

Open Access

The hydrological response of surface water to recent climate variability: A remote sensing case study from the central tropical Pacific

Higley, M. C. & Conroy, J. L., Jul 30 2019, In : Hydrological Processes. 33, 16, p. 2227-2239 13 p.

Research output: Contribution to journalArticle

The papaya genome project: Fruitful insights, a decade later

Nguyen, J. K. & Ming, R., Jan 1 2019, In : Acta Horticulturae. 1250, p. 111-121 11 p.

Research output: Contribution to journalArticle

The Role of Management on Methane Emissions From Subtropical Wetlands Embedded in Agricultural Ecosystems

DeLucia, N. J., Gomez-Casanovas, N., Boughton, E. H. & Bernacchi, C., Sep 1 2019, In : Journal of Geophysical Research: Biogeosciences. 124, 9, p. 2694-2708 15 p.

Research output: Contribution to journalArticle

Threads across the urban fabric: Youth mentorship relationships as neighborhood bridges

Andris, C., Liu, X., Mitchell, J., O’Dwyer, J. & Van Cleve, J., Jan 1 2019, (Accepted/In press) In : Journal of Urban Affairs.

Research output: Contribution to journalArticle

Uncovering hidden genetic variation in photosynthesis of field-grown maize under ozone pollution

Choquette, N. E., Ogut, F., Wertin, T. M., Montes, C. M., Sorgini, C. A., Morse, A. M., Brown, P. J., Leakey, A. D. B., Mcintyre, L. M. & Ainsworth, E. A., Oct 1 2019, In : Global change biology. 25, 12, p. 4327-4338

Research output: Contribution to journalArticle

Open Access

Water Use Efficiency as a Constraint and Target for Improving the Resilience and Productivity of C 3 and C 4 Crops

Leakey, A. D. B., Ferguson, J. N., Pignon, C. P., Wu, A., Jin, Z., Hammer, G. L. & Lobell, D. B., Apr 2019, In : Annual Review of Plant Biology. 70, p. 781-808 28 p.

Research output: Contribution to journalReview article

Winter hardiness of Miscanthus (III): Genome-wide association and genomic prediction for overwintering ability in Miscanthus sinensis

Dong, H., Clark, L. V., Lipka, A. E., Brummer, J. E., Głowacka, K., Hall, M. C., Heo, K., Jin, X., Peng, J., Yamada, T., Ghimire, B. K., Yoo, J. H., Yu, C. Y., Zhao, H., Long, S. P. & Sacks, E. J., Aug 2019, In : GCB Bioenergy. 11, 8, p. 930-955 26 p.

Research output: Contribution to journalArticle

Open Access

WRKY1Mediates transcriptional regulation of light and nitrogen signaling pathways

Heerah, S., Katari, M., Penjor, R., Coruzzi, G. & Marshall-Colon, A., Nov 2019, In : Plant physiology. 181, 3, p. 1371-1388 18 p.

Research output: Contribution to journalArticle

Open Access

Yield response of field-grown soybean exposed to heat waves under current and elevated [CO2]

Thomey, M. L., Slattery, R. A., Köhler, I. H., Bernacchi, C. J. & Ort, D. R., Dec 1 2019, In : Global change biology. 25, 12, p. 4352-4368 17 p.

Research output: Contribution to journalArticle

2018

Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L.

Zhang, J., Zhang, X., Tang, H., Zhang, Q., Hua, X., Ma, X., Zhu, F., Jones, T., Zhu, X., Bowers, J., Wai, C. M., Zheng, C., Shi, Y., Chen, S., Xu, X., Yue, J., Nelson, D. R., Huang, L., Li, Z., Xu, H. & 88 others, Zhou, D., Wang, Y., Hu, W., Lin, J., Deng, Y., Pandey, N., Mancini, M., Zerpa, D., Nguyen, J. K., Wang, L., Yu, L., Xin, Y., Ge, L., Arro, J., Han, J. O., Chakrabarty, S., Pushko, M., Zhang, W., Ma, Y., Ma, P., Lv, M., Chen, F., Zheng, G., Xu, J., Yang, Z., Deng, F., Chen, X., Liao, Z., Zhang, X., Lin, Z., Lin, H., Yan, H., Kuang, Z., Zhong, W., Liang, P., Wang, G., Yuan, Y., Shi, J., Hou, J., Lin, J., Jin, J., Cao, P., Shen, Q., Jiang, Q., Zhou, P., Ma, Y., Zhang, X., Xu, R., Liu, J., Zhou, Y., Jia, H., Ma, Q., Qi, R., Zhang, Z., Fang, J., Fang, H., Song, J., Wang, M., Dong, G., Wang, G., Chen, Z., Ma, T., Liu, H., Dhungana, S. R., Huss, S. E., Yang, X., Sharma, A., Trujillo, J. H., Martinez, M. C., Hudson, M., Riascos, J. J., Schuler, M., Chen, L. Q., Braun, D. M., Li, L., Yu, Q., Wang, J., Wang, K., Schatz, M. C., Heckerman, D., Van Sluys, M. A., Souza, G. M., Moore, P. H., Sankoff, D., VanBuren, R., Paterson, A. H., Nagai, C. & Ming, R., Nov 1 2018, In : Nature Genetics. 50, 11, p. 1565-1573 9 p.

Research output: Contribution to journalArticle

Alley cropping: Global patterns of species composition and function

Wolz, K. J. & DeLucia, E. H., Jan 15 2018, In : Agriculture, Ecosystems and Environment. 252, p. 61-68 8 p.

Research output: Contribution to journalReview article

Approaches and challenges to the study of loess - Introduction to the LoessFest Special Issue

Schaetzl, R. J., Bettis, E. A., Crouvi, O., Fitzsimmons, K. E., Grimley, D. A., Hambach, U., Lehmkuhl, F., Marković, S. B., Mason, J. A., Owczarek, P., Roberts, H. M., Rousseau, D. D., Stevens, T., Vandenberghe, J., Zárate, M., Veres, D., Yang, S., Zech, M., Conroy, J. L., Dave, A. K. & 8 others, Faust, D., Hao, Q., Obreht, I., Prud'Homme, C., Smalley, I., Tripaldi, A., Zeeden, C. & Zech, R., May 1 2018, In : Quaternary Research (United States). 89, 3, p. 563-618 56 p.

Research output: Contribution to journalReview article

BETYdb: a yield, trait, and ecosystem service database applied to second-generation bioenergy feedstock production

LeBauer, D., Kooper, R., Mulrooney, P., Rohde, S., Wang, D., Long, S. P. & Dietze, M. C., Jan 2018, In : GCB Bioenergy. 10, 1, p. 61-71 11 p.

Research output: Contribution to journalArticle

Big data in agriculture and their analyses

Shrivastava, S. & Marshall-Colon, A., Jan 1 2018, Encyclopedia of Food Security and Sustainability. Elsevier, p. 233-237 5 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Biorefinery for combined production of jet fuel and ethanol from lipid-producing sugarcane: a techno-economic evaluation

Kumar, D., Long, S. P. & Singh, V., Feb 1 2018, In : GCB Bioenergy. 10, 2, p. 92-107 16 p.

Research output: Contribution to journalArticle

Biphasic concentration-dependent interaction between imidacloprid and dietary phytochemicals in honey bees (Apis mellifera)

Wong, M. J., Liao, L. H. & Berenbaum, M. R., Nov 2018, In : PloS one. 13, 11, e0206625.

Research output: Contribution to journalArticle

Born to run? Quantifying the balance of prior bias and new information in prey escape decisions

Sutton, N. M. & O’dwyer, J. P., Sep 1 2018, In : American Naturalist. 192, 3, p. 321-331 11 p.

Research output: Contribution to journalArticle

Canopy warming accelerates development in soybean and maize, offsetting the delay in soybean reproductive development by elevated CO2 concentrations

Ruiz-Vera, U. M., Siebers, M. H., Jaiswal, D., Ort, D. R. & Bernacchi, C. J., Dec 2018, In : Plant Cell and Environment. 41, 12, p. 2806-2820 15 p.

Research output: Contribution to journalArticle

Chlorophyll can be reduced in crop canopies with little penalty to photosynthesis

Walker, B. J., Drewry, D. T., Slattery, R. A., VanLoocke, A., Cho, Y. B. & Ort, D. R., Feb 2018, In : Plant physiology. 176, 2, p. 1215-1232 18 p.

Research output: Contribution to journalArticle

Chromosome Nomenclature and Cytological Characterization of Sacred Lotus

Meng, Z., Hu, X., Zhang, Z., Li, Z., Lin, Q., Yang, M., Yang, P., Ming, R., Yu, Q. & Wang, K., Mar 1 2018, In : Cytogenetic and Genome Research. 153, 4, p. 223-231 9 p.

Research output: Contribution to journalArticle

Cinema-tick experience

Berenbaum, M., Jun 13 2018, In : American Entomologist. 64, 2, p. 67-70 4 p.

Research output: Contribution to journalArticle

Comparative analysis of homologous sequences of saccharum officinarum and saccharum spontaneum reveals independent polyploidization events

Sharma, A., Song, J., Lin, Q., Singh, R., Ramos, N., Wang, K., Zhang, J., Ming, R. & Yu, Q., Sep 25 2018, In : Frontiers in Plant Science. 9, 1414.

Research output: Contribution to journalArticle

Comparative CYP‐omic analysis between the DDT‐susceptible and ‐resistant Drosophila melanogaster strains 91‐C and 91‐R

Seong, K. M., Coates, B. S., Berenbaum, M. R., Clark, J. M. & Pittendrigh, B. R., Nov 2018, In : Pest Management Science. 74, 11, p. 2530-2543 14 p.

Research output: Contribution to journalArticle

Comparison of the mitochondrial genome sequences of six Annulohypoxylon stygium isolates suggests short fragment insertions as a potential factor leading to larger genomic size

Deng, Y., Hsiang, T., Li, S., Lin, L., Wang, Q., Chen, Q., Xie, B. & Ming, R., Sep 10 2018, In : Frontiers in Microbiology. 9, SEP, 2079.

Research output: Contribution to journalArticle

Consensus, uncertainties and challenges for perennial bioenergy crops and land use

Whitaker, J., Field, J. L., Bernacchi, C. J., Cerri, C. E. P., Ceulemans, R., Davies, C. A., DeLucia, E. H., Donnison, I. S., McCalmont, J. P., Paustian, K., Rowe, R. L., Smith, P., Thornley, P. & McNamara, N. P., Mar 2018, In : GCB Bioenergy. 10, 3, p. 150-164 15 p.

Research output: Contribution to journalReview article

Context-dependent and variable effects of endohyphal bacteria on interactions between fungi and seeds

Shaffer, J. P., Zalamea, P. C., Sarmiento, C., Gallery, R. E., Dalling, J. W., Davis, A. S., Baltrus, D. A. & Arnold, A. E., Dec 2018, In : Fungal Ecology. 36, p. 117-127 11 p.

Research output: Contribution to journalArticle

Conversion of grazed pastures to energy cane as a biofuel feedstock alters the emission of GHGs from soils in Southeastern United States

Gomez-Casanovas, N., DeLucia, N. J., Hudiburg, T. W., Bernacchi, C. J. & DeLucia, E. H., Jan 2018, In : Biomass and Bioenergy. 108, p. 312-322 11 p.

Research output: Contribution to journalArticle

Cross-scale neutral ecology and the maintenance of biodiversity

O'Dwyer, J. P. & Cornell, S. J., Dec 1 2018, In : Scientific reports. 8, 1, 10200.

Research output: Contribution to journalArticle

Cuticle and subsurface ornamentation of intact plant leaf epidermis under confocal and superresolution microscopy

Urban, M. A., Barclay, R. S., Sivaguru, M. & Punyasena, S. W., Feb 1 2018, In : Microscopy research and technique. 81, 2, p. 129-140 12 p.

Research output: Contribution to journalArticle

Damselflies in Distress

Berenbaum, M., Mar 8 2018, In : American Entomologist. 64, 1, p. 3-6

Research output: Contribution to journalArticle

Development and applications of chromosome-specific cytogenetic BAC-FISH probes in S. spontaneum

Dong, G., Shen, J., Zhang, Q., Wang, J., Yu, Q., Ming, R., Wang, K. & Zhang, J., Feb 26 2018, In : Frontiers in Plant Science. 9, 218.

Research output: Contribution to journalArticle

Development of an X-specific marker and identification of YY individuals in spinach

Wadlington, W. H. & Ming, R., Sep 1 2018, In : Theoretical and Applied Genetics. 131, 9, p. 1987-1994 8 p.

Research output: Contribution to journalArticle

Differential expression of hormone related genes between extreme segregants of a Saccharum interspecific F2 population

Zhu, F., Wai, C. M., Zhang, J., Jones, T. C., Nagai, C. & Ming, R., Mar 1 2018, In : Euphytica. 214, 3, 55.

Research output: Contribution to journalArticle

Differential methylation and expression of HUA1 ortholog in three sex types of papaya

Liu, J., Chatham, L., Aryal, R., Yu, Q. & Ming, R., Jul 2018, In : Plant Science. 272, p. 99-106 8 p.

Research output: Contribution to journalArticle