Research Output 1971 2019

2019

Yield response of field-grown soybean exposed to heat waves under current and elevated [CO2]

Thomey, M. L., Slattery, R. A., Köhler, I. H., Bernacchi, C. J. & Ort, D. R., Jan 1 2019, (Accepted/In press) In : Global change biology. 25, 12, p. 4352-4368 17 p.

Research output: Contribution to journalArticle

yield response
soybean
temperature
canopy
heat wave
2018
Amyelois transitella
Aspergillus flavus
Lepidoptera
Aspergillus
Pyralidae

Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L.

Zhang, J., Zhang, X., Tang, H., Zhang, Q., Hua, X., Ma, X., Zhu, F., Jones, T., Zhu, X., Bowers, J., Wai, C. M., Zheng, C., Shi, Y., Chen, S., Xu, X., Yue, J., Nelson, D. R., Huang, L., Li, Z., Xu, H. & 88 others, Zhou, D., Wang, Y., Hu, W., Lin, J., Deng, Y., Pandey, N., Mancini, M., Zerpa, D., Nguyen, J. K., Wang, L., Yu, L., Xin, Y., Ge, L., Arro, J., Han, J. O., Chakrabarty, S., Pushko, M., Zhang, W., Ma, Y., Ma, P., Lv, M., Chen, F., Zheng, G., Xu, J., Yang, Z., Deng, F., Chen, X., Liao, Z., Zhang, X., Lin, Z., Lin, H., Yan, H., Kuang, Z., Zhong, W., Liang, P., Wang, G., Yuan, Y., Shi, J., Hou, J., Lin, J., Jin, J., Cao, P., Shen, Q., Jiang, Q., Zhou, P., Ma, Y., Zhang, X., Xu, R., Liu, J., Zhou, Y., Jia, H., Ma, Q., Qi, R., Zhang, Z., Fang, J., Fang, H., Song, J., Wang, M., Dong, G., Wang, G., Chen, Z., Ma, T., Liu, H., Dhungana, S. R., Huss, S. E., Yang, X., Sharma, A., Trujillo, J. H., Martinez, M. C., Hudson, M., Riascos, J. J., Schuler, M. A., Chen, L., Braun, D. M., Li, L., Yu, Q., Wang, J., Wang, K., Schatz, M. C., Heckerman, D., Van Sluys, M. A., Souza, G. M., Moore, P. H., Sankoff, D., VanBuren, R., Paterson, A. H., Nagai, C. & Ming, R. R., Nov 1 2018, In : Nature Genetics. 50, 11, p. 1565-1573 9 p.

Research output: Contribution to journalArticle

Saccharum
Alleles
Genome
Chromosomes, Human, Pair 4
Disease Resistance

Alley cropping: Global patterns of species composition and function

Wolz, K. J. & Delucia, E. H., Jan 15 2018, In : Agriculture, Ecosystems and Environment. 252, p. 61-68 8 p.

Research output: Contribution to journalReview article

alley cropping
species diversity
crop
crops
fodder

Approaches and challenges to the study of loess - Introduction to the LoessFest Special Issue

Schaetzl, R. J., Bettis, E. A., Crouvi, O., Fitzsimmons, K. E., Grimley, D. A., Hambach, U., Lehmkuhl, F., Marković, S. B., Mason, J. A., Owczarek, P., Roberts, H. M., Rousseau, D. D., Stevens, T., Vandenberghe, J., Zárate, M., Veres, D., Yang, S., Zech, M., Conroy, J., Dave, A. K. & 8 others, Faust, D., Hao, Q., Obreht, I., Prud'Homme, C., Smalley, I., Tripaldi, A., Zeeden, C. & Zech, R., May 1 2018, In : Quaternary Research (United States). 89, 3, p. 563-618 56 p.

Research output: Contribution to journalReview article

loess
student
Loess

BETYdb: a yield, trait, and ecosystem service database applied to second-generation bioenergy feedstock production

LeBauer, D. S., Kooper, R., Mulrooney, P., Rohde, S., Wang, D., Long, S. P. & Dietze, M. C., Jan 2018, In : GCB Bioenergy. 10, 1, p. 61-71 11 p.

Research output: Contribution to journalArticle

bioenergy
Biofuels
feedstocks
biofuels
biofuel

Biorefinery for combined production of jet fuel and ethanol from lipid-producing sugarcane: a techno-economic evaluation

Kumar, D., Long, S. P. & Singh, V., Feb 1 2018, In : GCB Bioenergy. 10, 2, p. 92-107 16 p.

Research output: Contribution to journalArticle

biorefining
Jet fuel
economic analysis
Lipids
sugarcane

Biphasic concentration-dependent interaction between imidacloprid and dietary phytochemicals in honey bees (Apis mellifera)

Wong, M. J., Liao, L. H. & Berenbaum, M. R., Nov 2018, In : PloS one. 13, 11, e0206625.

Research output: Contribution to journalArticle

Honey
Bees
imidacloprid
Phytochemicals
Apis mellifera

Born to run? Quantifying the balance of prior bias and new information in prey escape decisions

Sutton, N. M. & O'Dwyer, J. P., Sep 1 2018, In : American Naturalist. 192, 3, p. 321-331 11 p.

Research output: Contribution to journalArticle

deer
Odocoileus virginianus
predator
escape behavior
predators

Canopy warming accelerates development in soybean and maize, offsetting the delay in soybean reproductive development by elevated CO2 concentrations

Ruiz-Vera, U. M., Siebers, M. H., Jaiswal, D., Ort, D. R. & Bernacchi, C. J., Dec 2018, In : Plant Cell and Environment. 41, 12, p. 2806-2820 15 p.

Research output: Contribution to journalArticle

Soybeans
Zea mays
carbon dioxide
canopy
soybeans

Chlorophyll can be reduced in crop canopies with little penalty to photosynthesis

Walker, B. J., Drewry, D. T., Slattery, R. A., VanLoocke, A., Cho, Y. B. & Ort, D. R., Feb 2018, In : Plant physiology. 176, 2, p. 1215-1232 18 p.

Research output: Contribution to journalArticle

Photosynthesis
Chlorophyll
photosynthesis
canopy
chlorophyll

Chromosome Nomenclature and Cytological Characterization of Sacred Lotus

Meng, Z., Hu, X., Zhang, Z., Li, Z., Lin, Q., Yang, M., Yang, P., Ming, R. R., Yu, Q. & Wang, K., Mar 1 2018, In : Cytogenetic and Genome Research. 153, 4, p. 223-231 9 p.

Research output: Contribution to journalArticle

Nelumbo
Terminology
China
Chromosomes
Cytogenetics

Cinema-tick experience

Berenbaum, M. R., Jun 13 2018, In : American Entomologist. 64, 2, p. 67-70 4 p.

Research output: Contribution to journalArticle

tick
ticks

Comparative analysis of homologous sequences of saccharum officinarum and saccharum spontaneum reveals independent polyploidization events

Sharma, A., Song, J., Lin, Q., Singh, R., Ramos, N., Wang, K., Zhang, J., Ming, R. & Yu, Q., Sep 25 2018, In : Frontiers in Plant Science. 9, 1414.

Research output: Contribution to journalArticle

Saccharum spontaneum
Saccharum officinarum
sequence homology
Saccharum
bacterial artificial chromosomes

Comparative CYP‐omic analysis between the DDT‐susceptible and ‐resistant Drosophila melanogaster strains 91‐C and 91‐R

Seong, K. M., Coates, B. S., Berenbaum, M. R., Clark, J. M. & Pittendrigh, B. R., Nov 2018, In : Pest Management Science. 74, 11, p. 2530-2543 14 p.

Research output: Contribution to journalArticle

DDT (pesticide)
Drosophila melanogaster
genes
amino acids
stop codon
pollen
Pollen
Lighting
Microscopy
Microscopic examination

Comparison of the mitochondrial genome sequences of six Annulohypoxylon stygium isolates suggests short fragment insertions as a potential factor leading to larger genomic size

Deng, Y., Hsiang, T., Li, S., Lin, L., Wang, Q., Chen, Q., Xie, B. & Ming, R., Sep 10 2018, In : Frontiers in Microbiology. 9, SEP, 2079.

Research output: Contribution to journalArticle

Mitochondrial Genome
Introns
Intergenic DNA
Genes
Genome

Consensus, uncertainties and challenges for perennial bioenergy crops and land use

Whitaker, J., Field, J. L., Bernacchi, C. J., Cerri, C. E. P., Ceulemans, R., Davies, C. A., DeLucia, E. H., Donnison, I. S., McCalmont, J. P., Paustian, K., Rowe, R. L., Smith, P., Thornley, P. & McNamara, N. P., Mar 2018, In : GCB Bioenergy. 10, 3, p. 150-164 15 p.

Research output: Contribution to journalReview article

energy crops
bioenergy
Land use
Crops
Greenhouse gases

Context-dependent and variable effects of endohyphal bacteria on interactions between fungi and seeds

Shaffer, J. P., Zalamea, P. C., Sarmiento, C., Gallery, R. E., Dalling, J. W., Davis, A. S., Baltrus, D. A. & Arnold, A. E., Dec 2018, In : Fungal Ecology. 36, p. 117-127 11 p.

Research output: Contribution to journalArticle

fungus
seed
bacterium
fungi
bacteria

Conversion of grazed pastures to energy cane as a biofuel feedstock alters the emission of GHGs from soils in Southeastern United States

Gomez-Casanovas, N., DeLucia, N. J., Hudiburg, T. W., Bernacchi, C. & Delucia, E. H., Jan 2018, In : Biomass and Bioenergy. 108, p. 312-322 11 p.

Research output: Contribution to journalArticle

Biofuels
canes
Southeastern United States
feedstocks
biofuels

Cross-scale neutral ecology and the maintenance of biodiversity

O'Dwyer, J. P. & Cornell, S. J., Dec 1 2018, In : Scientific reports. 8, 1, 10200.

Research output: Contribution to journalArticle

biodiversity
ecology
incompatibility
tropical forest
prediction

Cuticle and subsurface ornamentation of intact plant leaf epidermis under confocal and superresolution microscopy

Urban, M. A., Barclay, R. S., Sivaguru, M. & Punyasena, S. W., Feb 1 2018, In : Microscopy research and technique. 81, 2, p. 129-140 12 p.

Research output: Contribution to journalArticle

Plant Epidermis
epidermis
Plant Leaves
fossils
Confocal Microscopy

Damselflies in Distress

Berenbaum, M., Mar 8 2018, In : American Entomologist. 64, 1, p. 3-6

Research output: Contribution to journalArticle

Development and applications of chromosome-specific cytogenetic BAC-FISH probes in S. spontaneum

Dong, G., Shen, J., Zhang, Q., Wang, J., Yu, Q., Ming, R. R., Wang, K. & Zhang, J., Feb 26 2018, In : Frontiers in Plant Science. 9, 218.

Research output: Contribution to journalArticle

bacterial artificial chromosomes
Saccharum spontaneum
fluorescence in situ hybridization
cytogenetics
chromosomes

Development of an X-specific marker and identification of YY individuals in spinach

Wadlington, W. H. & Ming, R. R., Sep 1 2018, In : Theoretical and Applied Genetics. 131, 9, p. 1987-1994 8 p.

Research output: Contribution to journalArticle

Spinacia oleracea
spinach
Sex Chromosomes
sex chromosomes
X Chromosome

Differential methylation and expression of HUA1 ortholog in three sex types of papaya

Liu, J., Chatham, L., Aryal, R., Yu, Q. & Ming, R. R., Jul 2018, In : Plant Science. 272, p. 99-106 8 p.

Research output: Contribution to journalArticle

Carica
papayas
methylation
Methylation
gender

Diversification and independent domestication of Asian and European pears

Wu, J., Wang, Y., Xu, J., Korban, S. S., Fei, Z., Tao, S., Ming, R., Tai, S., Khan, A. M., Postman, J. D., Gu, C., Yin, H., Zheng, D., Qi, K., Li, Y., Wang, R., Deng, C. H., Kumar, S., Chagné, D., Li, X. & 19 others, Wu, J., Huang, X., Zhang, H., Xie, Z., Li, X., Zhang, M., Li, Y., Yue, Z., Fang, X., Li, J., Li, L., Jin, C., Qin, M., Zhang, J., Wu, X., Ke, Y., Wang, J., Yang, H. & Zhang, S., Jun 11 2018, In : Genome biology. 19, 1, 77.

Research output: Contribution to journalArticle

Pyrus
domestication
pears
genome
fruit

Dormancy-defense syndromes and tradeoffs between physical and chemical defenses in seeds of pioneer species

Zalamea, P. C., Dalling, J. W., Sarmiento, C., Arnold, A. E., Delevich, C., Berhow, M. A., Ndobegang, A., Gripenberg, S. & Davis, A., Sep 2018, In : Ecology. 99, 9, p. 1988-1998 11 p.

Research output: Contribution to journalArticle

physical defense
pioneer species
chemical defense
dormancy
seed
biochar
Nitrous Oxide
nitrous oxide
Zea mays
Soil

Ecological history of a long-lived conifer in a disjunct population

Herring, E. M., Gavin, D. G., Dobrowski, S. Z., Fernandez, M. & Hu, F. S., Jan 2018, In : Journal of Ecology. 106, 1, p. 319-332 14 p.

Research output: Contribution to journalArticle

conifers
coniferous tree
pollen
Tsuga mertensiana
history

Ecophylogenetics clarifies the evolutionary association between mammals and their gut microbiota

Gaulke, C. A., Arnold, H. K., Humphreys, I. R., Kembel, S. W., O’dwyer, J. P. & Sharpton, T. J., Sep 1 2018, In : mBio. 9, 5, e01348-18.

Research output: Contribution to journalArticle

Mammals
Microbiota
Gastrointestinal Microbiome
Genetic Selection
Biodiversity
Last Glacial Maximum
loess
silt
valley
gastropod

Erratum: Farming with crops and rocks to address global climate, food and soil security (Nature Plants (2018), DOI: 10.1038/s41477-018-0108-y)

Beerling, D. J., Leake, J. R., Long, S. P., Scholes, J. D., Ton, J., Nelson, P. N., Bird, M., Kantzas, E., Taylor, L. L., Sarkar, B., Kelland, M., Delucia, E. H., Kantola, I., Müller, C., Rau, G. H. & Hansen, J., Jun 1 2018, In : Nature Plants. 4, 6, 1 p.

Research output: Contribution to journalComment/debate

acidification
farming systems
rocks
climate
crops

Erratum to: Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L. (Nature Genetics, (2018), 50, 11, (1565-1573), 10.1038/s41588-018-0237-2)

Zhang, J., Zhang, X., Tang, H., Zhang, Q., Hua, X., Ma, X., Zhu, F., Jones, T., Zhu, X., Bowers, J., Wai, C. M., Zheng, C., Shi, Y., Chen, S., Xu, X., Yue, J., Nelson, D. R., Huang, L., Li, Z., Xu, H. & 88 others, Zhou, D., Wang, Y., Hu, W., Lin, J., Deng, Y., Pandey, N., Mancini, M., Zerpa, D., Nguyen, J. K., Wang, L., Yu, L., Xin, Y., Ge, L., Arro, J., Han, J. O., Chakrabarty, S., Pushko, M., Zhang, W., Ma, Y., Ma, P., Lv, M., Chen, F., Zheng, G., Xu, J., Yang, Z., Deng, F., Chen, X., Liao, Z., Zhang, X., Lin, Z., Lin, H., Yan, H., Kuang, Z., Zhong, W., Liang, P., Wang, G., Yuan, Y., Shi, J., Hou, J., Lin, J., Jin, J., Cao, P., Shen, Q., Jiang, Q., Zhou, P., Ma, Y., Zhang, X., Xu, R., Liu, J., Zhou, Y., Jia, H., Ma, Q., Qi, R., Zhang, Z., Fang, J., Fang, H., Song, J., Wang, M., Dong, G., Wang, G., Chen, Z., Ma, T., Liu, H., Dhungana, S. R., Huss, S. E., Yang, X., Sharma, A., Trujillo, J. H., Martinez, M. C., Hudson, M., Riascos, J. J., Schuler, M. A., Chen, L., Braun, D. M., Li, L., Yu, Q., Wang, J., Wang, K., Schatz, M. C., Heckerman, D., Van Sluys, M. A., Souza, G. M., Moore, P. H., Sankoff, D., VanBuren, R., Paterson, A. H., Nagai, C. & Ming, R. R., Dec 1 2018, In : Nature Genetics. 50, 12, 1 p.

Research output: Contribution to journalComment/debate

Saccharum
Alleles
Genome
Molecular Sequence Annotation
Databases

Evolution in a community context: Trait responses to multiple species interactions

Terhorst, C. P., Zee, P. C., Heath, K. D., Miller, T. E., Pastore, A. I., Patel, S., Schreiber, S. J., Wade, M. J. & Walsh, M. R., Mar 2018, In : American Naturalist. 191, 3, p. 368-380 13 p.

Research output: Contribution to journalArticle

genetic correlation
trajectories
trajectory
effect

Farming with crops and rocks to address global climate, food and soil security /631/449 /706/1143 /704/47 /704/106 perspective

Beerling, D. J., Leake, J. R., Long, S. P., Scholes, J. D., Ton, J., Nelson, P. N., Bird, M., Kantzas, E., Taylor, L. L., Sarkar, B., Kelland, M., DeLucia, E., Kantola, I., Müller, C., Rau, G. & Hansen, J., Mar 1 2018, In : Nature Plants. 4, 3, p. 138-147 10 p.

Research output: Contribution to journalArticle

farming systems
rocks
silicates
climate
crops

Fossil pollen and spores in paleoecology

Mander, L. & Punyasena, S. W., Jan 1 2018, Vertebrate Paleobiology and Paleoanthropology. Springer, p. 215-234 20 p. (Vertebrate Paleobiology and Paleoanthropology).

Research output: Chapter in Book/Report/Conference proceedingChapter

paleoecology
spore
pollen
fossils
spores

Four tyrosine residues of the rice immune receptor XA21 are not required for interaction with the co-receptor OsSERK2 or resistance to Xanthomonas oryzae pv. oryzae

Caddell, D. F., Wei, T., Sharma, S., Oh, M. H., Park, C. J., Canlas, P., Huber, S. C. & Ronald, P. C., Jan 1 2018, In : PeerJ. 2018, 12, e6074.

Research output: Contribution to journalArticle

Xanthomonas
Xanthomonas oryzae pv. oryzae
Tyrosine
tyrosine
rice

Frontiers in alley cropping: Transformative solutions for temperate agriculture

Wolz, K. J., Lovell, S. T., Branham, B. E., Eddy, W. C., Keeley, K., Revord, R. S., Wander, M. M., Yang, W. & Delucia, E. H., Mar 2018, In : Global change biology. 24, 3, p. 883-894 12 p.

Research output: Contribution to journalComment/debate

alley cropping
Agriculture
Crops
Land use
Climate change

Functional characterization of CYP4G11—a highly conserved enzyme in the western honey bee Apis mellifera

Calla, B., MacLean, M., Liao, L. H., Dhanjal, I., Tittiger, C., Blomquist, G. J. & Berenbaum, M. R., Oct 2018, In : Insect Molecular Biology. 27, 5, p. 661-674 14 p.

Research output: Contribution to journalArticle

Desiccation
Honey
Waxes
Bees
desiccation (plant physiology)

Genome-wide searches and molecular analyses highlight the unique evolutionary path of flavone synthase i (FNSI) in Apiaceae

Wang, Q. Z., Downie, S. R., Chen, Z. X. & McIntyre, C. L., Jan 1 2018, In : Genome. 61, 2, p. 103-109 7 p.

Research output: Contribution to journalArticle

flavone
Apiaceae
Genome
Genes

Genomic footprint of evolution of eusociality in bees: floral food use and CYPome “blooms”

Johnson, R. M., Harpur, B. A., Dogantzis, K. A., Zayed, A. & Berenbaum, M. R., Aug 1 2018, In : Insectes Sociaux. 65, 3, p. 445-454 10 p.

Research output: Contribution to journalArticle

eusociality
bee
footprint
Apoidea
genomics

Grazing alters net ecosystem C fluxes and the global warming potential of a subtropical pasture

Gomez-Casanovas, N., Delucia, N. J., Bernacchi, C., Boughton, E. H., Sparks, J. P., Chamberlain, S. D. & Delucia, E. H., Mar 2018, In : Ecological Applications. 28, 2, p. 557-572 16 p.

Research output: Contribution to journalArticle

global warming
pasture
grazing
ecosystem
soil emission

High-fidelity detection of crop biomass quantitative trait loci from low-cost imaging in the field

Banan, D., Paul, R. E., Feldman, M. J., Holmes, M. W., Schlake, H., Baxter, I., Jiang, H. & Leakey, A. D. B., Feb 1 2018, In : Plant Direct. 2, 2, e00041.

Research output: Contribution to journalArticle

Open Access
Quantitative Trait Loci
Biomass
Crops
biomass production
quantitative trait loci

Highstands and overflow history of glacial Lake Chicago and downstream impacts on Gulf of Mexico δ18O values

Curry, B. B., Bruegger, A. R. & Conroy, J., Jul 1 2018, In : Geology. 46, 7, p. 667-670 4 p.

Research output: Contribution to journalArticle

glacial lake
highstand
meltwater
lake
history
Amyelois transitella
adjuvants
insecticides
toxicity
pesticide application

Increasing drought and diminishing benefits of elevated carbon dioxide for soybean yields across the US Midwest

Jin, Z., Ainsworth, E., Leakey, A. & Lobell, D. B., Feb 1 2018, In : Global change biology. 24, 2, p. e522-e533

Research output: Contribution to journalArticle

Drought
Carbon Dioxide
Transpiration
soybean
carbon dioxide

Inpactor, integrated and parallel analyzer and classifier of LTR retrotransposons and ITS application for pineapple LTR retrotransposons diversity and dynamics

Orozco-Arias, S., Liu, J., Tabares-Soto, R., Ceballos, D., Domingues, D. S., Garavito, A., Ming, R. & Guyot, R., Jan 1 2018, In : Biology. 7, 2, 32.

Research output: Contribution to journalArticle

Ananas
Retroelements
terminal repeat sequences
Terminal Repeat Sequences
retrotransposons
cassava
ground penetrating radar
Radar
plots
radar data

Invoking adaptation to decipher the genetic legacy of past climate change

de Lafontaine, G., Napier, J. D., Petit, R. J. & Hu, F. S., Jul 2018, In : Ecology. 99, 7, p. 1530-1546 17 p.

Research output: Contribution to journalArticle

climate change
natural selection
alleles
climate
allele