Research Output 1975 2020

2019

Perspective: Understanding the Intersection of Climate/Environmental Change, Health, Agriculture, and Improved Nutrition - A Case Study: Type 2 Diabetes

Finley, J., Jaacks, L. M., Peters, C. J., Ort, D. R., Aimone, A. M., Conrad, Z. & Raiten, D. J., Sep 1 2019, In : Advances in Nutrition. 10, 5, p. 731-738 8 p.

Research output: Contribution to journalReview article

Open Access
Environmental Health
Climate Change
Agriculture
noninsulin-dependent diabetes mellitus
Type 2 Diabetes Mellitus

Phenotyping photosynthesis on the limit - a critical examination of RACiR

Taylor, S. H. & Long, S. P., Jan 1 2019, In : The New phytologist. 221, 2, p. 621-624 4 p.

Research output: Contribution to journalLetter

Open Access
Ribulose-Bisphosphate Carboxylase
Photosynthesis
ribulose-bisphosphate carboxylase
global change
photosynthesis

Photosynthesis across African cassava germplasm is limited by Rubisco and mesophyll conductance at steady state, but by stomatal conductance in fluctuating light

De Souza, A. P., Wang, Y., Orr, D. J., Carmo-Silva, E. & Long, S. P., Jan 1 2019, (Accepted/In press) In : New Phytologist.

Research output: Contribution to journalArticle

Open Access
Ribulose-Bisphosphate Carboxylase
Manihot
Photosynthesis
ribulose-bisphosphate carboxylase
cassava

Plant Networks as Traits and Hypotheses: Moving Beyond Description

Marshall-Colón, A. & Kliebenstein, D. J., Sep 2019, In : Trends in Plant Science. 24, 9, p. 840-852 13 p.

Research output: Contribution to journalReview article

Biological Sciences
organisms
phenotype
gene interaction
linkage (genetics)

Population structure of Miscanthus sacchariflorus reveals two major polyploidization events, tetraploid-mediated unidirectional introgression from diploid M. sinensis, and diversity centred around the Yellow Sea

Clark, L. V., Jin, X., Petersen, K. K., Anzoua, K. G., Bagmet, L., Chebukin, P., Deuter, M., Dzyubenko, E., Dzyubenko, N., Heo, K., Johnson, D. A., Jørgensen, U., Kjeldsen, J. B., Nagano, H., Peng, J., Sabitov, A., Yamada, T., Yoo, J. H., Yu, C. Y., Long, S. P. & 1 others, Sacks, E. J., Oct 29 2019, In : Annals of botany. 124, 4, p. 731-748 18 p.

Research output: Contribution to journalArticle

Open Access
Miscanthus sacchariflorus
Miscanthus sinensis
Yellow Sea
introgression
tetraploidy

Positional cloning and characterization of the papaya diminutive mutant reveal a truncating mutation in the CpMMS19 gene

Wang, Y., Singh, R., Tong, E., Tang, M., Zheng, L., Fang, H., Li, R., Guo, L., Song, J., Srinivasan, R., Sharma, A., Lin, L., Trujillo, J. A., Manshardt, R., Chen, L. Y., Ming, R. & Yu, Q., Jan 1 2019, (Accepted/In press) In : New Phytologist.

Research output: Contribution to journalArticle

Carica
papayas
Organism Cloning
molecular cloning
Alleles

Predicting light-induced stomatal movements based on the redox state of plastoquinone: theory and validation

Kromdijk, J., Głowacka, K. & Long, S. P., Jul 1 2019, In : Photosynthesis research. 141, 1, p. 83-97 15 p.

Research output: Contribution to journalArticle

Plastoquinone
stomatal movement
Oxidation-Reduction
Light
stomatal conductance

Recent polyploidization events in three Saccharum founding species

Zhang, J., Zhang, Q., Li, L., Tang, H., Zhang, Q., Chen, Y., Arrow, J., Zhang, X., Wang, A., Miao, C. & Ming, R., Jan 2019, In : Plant Biotechnology Journal. 17, 1, p. 264-274 11 p.

Research output: Contribution to journalArticle

Saccharum
Genome
genome
Sorghum
linkage groups

Recent warming has resulted in smaller gains in net carbon uptake in northern high latitudes

Zhu, P., Zhuang, Q., Welp, L., Ciais, P., Heimann, M., Peng, B., Li, W., Bernacchi, C., Roedenbeck, C. & Keenan, T. F., Sep 1 2019, In : Journal of Climate. 32, 18, p. 5849-5863 15 p.

Research output: Contribution to journalArticle

warming
carbon
drawdown
carbon balance
temperature

Reply to: Brazilian ethanol expansion subject to limitations

Jaiswal, D., De Souza, A. P., Larsen, S., LeBauer, D. S., Miguez, F. E., Sparovek, G., Bollero, G. A., Buckeridge, M. S. & Long, S. P., Mar 1 2019, In : Nature Climate Change. 9, 3, p. 211-212 2 p.

Research output: Contribution to journalLetter

ethanol

Resilience of lake biogeochemistry to boreal-forest wildfires during the late Holocene

Chipman, M. L. & Hu, F. S., Aug 1 2019, In : Biology Letters. 15, 8, 20190390.

Research output: Contribution to journalArticle

biogeochemistry
Lakes
wildfires
boreal forests
lakes

Rethinking long-term vegetation dynamics: multiple glacial refugia and local expansion of a species complex

Napier, J. D., de Lafontaine, G., Heath, K. D. & Hu, F. S., May 2019, In : Ecography. 42, 5, p. 1056-1067 12 p.

Research output: Contribution to journalArticle

Alnus
vegetation dynamics
species complex
refugium
refuge habitats

Safer food through plant science: Reducing toxic element accumulation in crops

Clemens, S. & Ort, D., Oct 24 2019, In : Journal of experimental botany. 70, 20, p. 5537-5557 21 p.

Research output: Contribution to journalReview article

Edible Plants
Poisons
food plants
cadmium
arsenic
Open Access
nitrate reduction
sequence alignment
ammonification
nitrites
amino acids

Siberian Miscanthus sacchariflorus accessions surpass the exceptional chilling tolerance of the most widely cultivated clone of Miscanthus x giganteus

Pignon, C. P., Spitz, I., Sacks, E. J., Jørgensen, U., Kørup, K. & Long, S. P., Jul 2019, In : GCB Bioenergy. 11, 7, p. 883-894 12 p.

Research output: Contribution to journalArticle

Open Access
Miscanthus sacchariflorus
Miscanthus giganteus
Chilling
cold tolerance
clone

Soil and species effects on bark nutrient storage in a premontane tropical forest

Jones, J. M., Heineman, K. D. & Dalling, J. W., Jan 1 2019, In : Plant and Soil.

Research output: Contribution to journalArticle

tropical forests
bark
tropical forest
nutrient
nutrients

Spatial scale affects novel and disappeared climate change projections in Alaska

Morrison, B. D., Heath, K. & Greenberg, J. A., Nov 1 2019, In : Ecology and Evolution. 9, 21, p. 12026-12044 19 p.

Research output: Contribution to journalArticle

Open Access
climate change
climate
Last Glacial Maximum
downscaling
ecological impact

Speaking of gender bias

Berenbaum, M. R., Apr 23 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 17, p. 8086-8088 3 p.

Research output: Contribution to journalReview article

Open Access

Species-specific effects of phosphorus addition on tropical tree seedling response to elevated CO2

Thompson, J. B., Slot, M., Dalling, J. W., Winter, K., Turner, B. L. & Zalamea, P. C., Oct 1 2019, In : Functional Ecology. 33, 10, p. 1871-1881 11 p.

Research output: Contribution to journalArticle

transpiration
seedling
phosphorus
seedlings
tropical forests
Last Glacial Maximum
surface wind
wind direction
ice
ice sheet

Synthetic glycolate metabolism pathways stimulate crop growth and productivity in the field

South, P. F., Cavanagh, A. P., Liu, H. W. & Ort, D. R., Jan 4 2019, In : Science. 363, 6422, eaat9077.

Research output: Contribution to journalArticle

glycolic acid
Chloroplasts
Growth
Metabolic Networks and Pathways
Oxygenases

Target enrichment sequencing of 307 germplasm accessions identified ancestry of ancient and modern hybrids and signatures of adaptation and selection in sugarcane (Saccharum spp.), a ‘sweet’ crop with ‘bitter’ genomes

Yang, X., Song, J., Todd, J., Peng, Z., Paudel, D., Luo, Z., Ma, X., You, Q., Hanson, E., Zhao, Z., Zhao, Y., Zhang, J., Ming, R. & Wang, J., Feb 1 2019, In : Plant Biotechnology Journal. 17, 2, p. 488-498 11 p.

Research output: Contribution to journalArticle

Saccharum
sugarcane
germplasm
ancestry
Genome

The bracteatus pineapple genome and domestication of clonally propagated crops

Chen, L. Y., VanBuren, R., Paris, M., Zhou, H., Zhang, X., Wai, C. M., Yan, H., Chen, S., Alonge, M., Ramakrishnan, S., Liao, Z., Liu, J., Lin, J., Yue, J., Fatima, M., Lin, Z., Zhang, J., Huang, L., Wang, H., Hwa, T. Y. & 25 others, Kao, S. M., Choi, J. Y., Sharma, A., Song, J., Wang, L., Yim, W. C., Cushman, J. C., Paull, R. E., Matsumoto, T., Qin, Y., Wu, Q., Wang, J., Yu, Q., Wu, J., Zhang, S., Boches, P., Tung, C. W., Wang, M. L., Coppens d’Eeckenbrugge, G., Sanewski, G. M., Purugganan, M. D., Schatz, M. C., Bennetzen, J. L., Lexer, C. & Ming, R., Oct 1 2019, In : Nature Genetics. 51, 10, p. 1549-1558 10 p.

Research output: Contribution to journalArticle

Open Access
Ananas
Genome
Bromelains
Capsicum
South America

The complete chloroplast genome of a gynodioecious deciduous orchid Satyrium ciliatum (Orchidaceae) female

Ma, X., Lin, H., Chen, Y., Lan, S. & Ming, R., Jul 3 2019, In : Mitochondrial DNA Part B: Resources. 4, 2, p. 3876-3877 2 p.

Research output: Contribution to journalArticle

Open Access
Orchidaceae
Chloroplast Genome
Genes
Base Composition
Transfer RNA

The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication

Zhuang, W., Chen, H., Yang, M., Wang, J., Pandey, M. K., Zhang, C., Chang, W. C., Zhang, L., Zhang, X., Tang, R., Garg, V., Wang, X., Tang, H., Chow, C. N., Wang, J., Deng, Y., Wang, D., Khan, A. W., Yang, Q., Cai, T. & 58 others, Bajaj, P., Wu, K., Guo, B., Zhang, X., Li, J., Liang, F., Hu, J., Liao, B., Liu, S., Chitikineni, A., Yan, H., Zheng, Y., Shan, S., Liu, Q., Xie, D., Wang, Z., Khan, S. A., Ali, N., Zhao, C., Li, X., Luo, Z., Zhang, S., Zhuang, R., Peng, Z., Wang, S., Mamadou, G., Zhuang, Y., Zhao, Z., Yu, W., Xiong, F., Quan, W., Yuan, M., Li, Y., Zou, H., Xia, H., Zha, L., Fan, J., Yu, J., Xie, W., Yuan, J., Chen, K., Zhao, S., Chu, W., Chen, Y., Sun, P., Meng, F., Zhuo, T., Zhao, Y., Li, C., He, G., Zhao, Y., Wang, C., Kavikishor, P. B., Pan, R. L., Paterson, A. H., Wang, X., Ming, R. & Varshney, R. K., May 1 2019, In : Nature Genetics. 51, 5, p. 865-876 12 p.

Research output: Contribution to journalArticle

Open Access
Polyploidy
Karyotype
Fabaceae
Genome
Seeds

The hydrological response of surface water to recent climate variability: A remote sensing case study from the central tropical Pacific

Higley, M. C. & Conroy, J., Jul 30 2019, In : Hydrological Processes. 33, 16, p. 2227-2239 13 p.

Research output: Contribution to journalArticle

hydrological response
remote sensing
surface water
climate
sea level change

The papaya genome project: Fruitful insights, a decade later

Nguyen, J. K. & Ming, R., Jan 1 2019, In : Acta Horticulturae. 1250, p. 111-121 11 p.

Research output: Contribution to journalArticle

papayas
Y chromosome
genome
domestication
chromosomes

The Role of Management on Methane Emissions From Subtropical Wetlands Embedded in Agricultural Ecosystems

DeLucia, N. J., Gomez-Casanovas, N., Boughton, E. H. & Bernacchi, C., Sep 1 2019, In : Journal of Geophysical Research: Biogeosciences. 124, 9, p. 2694-2708 15 p.

Research output: Contribution to journalArticle

wetlands
Methane
ecosystems
Wetlands
agricultural ecosystem

Threads across the urban fabric: Youth mentorship relationships as neighborhood bridges

Andris, C., Liu, X., Mitchell, J., O’Dwyer, J. & Van Cleve, J., Jan 1 2019, (Accepted/In press) In : Journal of Urban Affairs.

Research output: Contribution to journalArticle

assets
youth program
commuter
administrative boundary
mentoring

Uncovering hidden genetic variation in photosynthesis of field-grown maize under ozone pollution

Choquette, N. E., Ogut, F., Wertin, T. M., Montes, C. M., Sorgini, C. A., Morse, A. M., Brown, P. J., Leakey, A. D. B., Mcintyre, L. M. & Ainsworth, E. A., Oct 1 2019, In : Global change biology. 25, 12, p. 4327-4338

Research output: Contribution to journalArticle

Open Access
Photosynthesis
Ozone
genetic variation
photosynthesis
Pollution

Water Use Efficiency as a Constraint and Target for Improving the Resilience and Productivity of C 3 and C 4 Crops

Leakey, A., Ferguson, J. N., Pignon, C. P., Wu, A., Jin, Z., Hammer, G. L. & Lobell, D. B., Apr 2019, In : Annual Review of Plant Biology. 70, p. 781-808 28 p.

Research output: Contribution to journalReview article

water use efficiency
Water
crops
Photosynthesis
photosynthesis

Winter hardiness of Miscanthus (III): Genome-wide association and genomic prediction for overwintering ability in Miscanthus sinensis

Dong, H., Clark, L. V., Lipka, A. E., Brummer, J. E., Głowacka, K., Hall, M. C., Heo, K., Jin, X., Peng, J., Yamada, T., Ghimire, B. K., Yoo, J. H., Yu, C. Y., Zhao, H., Long, S. P. & Sacks, E. J., Aug 2019, In : GCB Bioenergy. 11, 8, p. 930-955 26 p.

Research output: Contribution to journalArticle

Open Access
Miscanthus sinensis
winter hardiness
Miscanthus
overwintering
genomics

WRKY1 Mediates Transcriptional Regulation of Light and Nitrogen Signaling Pathways

Heerah, S., Katari, M., Penjor, R., Coruzzi, G. & Marshall-Colon, A., Nov 1 2019, In : Plant physiology. 181, 3, p. 1371-1388 18 p.

Research output: Contribution to journalArticle

Open Access
Nitrogen
Light
nitrogen
metabolism
Arabidopsis

Yield response of field-grown soybean exposed to heat waves under current and elevated [CO2]

Thomey, M. L., Slattery, R. A., Köhler, I. H., Bernacchi, C. J. & Ort, D. R., Dec 1 2019, In : Global change biology. 25, 12, p. 4352-4368 17 p.

Research output: Contribution to journalArticle

yield response
soybean
temperature
canopy
heat wave
2018
Amyelois transitella
Aspergillus flavus
Lepidoptera
Aspergillus
Pyralidae

Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L.

Zhang, J., Zhang, X., Tang, H., Zhang, Q., Hua, X., Ma, X., Zhu, F., Jones, T., Zhu, X., Bowers, J., Wai, C. M., Zheng, C., Shi, Y., Chen, S., Xu, X., Yue, J., Nelson, D. R., Huang, L., Li, Z., Xu, H. & 88 others, Zhou, D., Wang, Y., Hu, W., Lin, J., Deng, Y., Pandey, N., Mancini, M., Zerpa, D., Nguyen, J. K., Wang, L., Yu, L., Xin, Y., Ge, L., Arro, J., Han, J. O., Chakrabarty, S., Pushko, M., Zhang, W., Ma, Y., Ma, P., Lv, M., Chen, F., Zheng, G., Xu, J., Yang, Z., Deng, F., Chen, X., Liao, Z., Zhang, X., Lin, Z., Lin, H., Yan, H., Kuang, Z., Zhong, W., Liang, P., Wang, G., Yuan, Y., Shi, J., Hou, J., Lin, J., Jin, J., Cao, P., Shen, Q., Jiang, Q., Zhou, P., Ma, Y., Zhang, X., Xu, R., Liu, J., Zhou, Y., Jia, H., Ma, Q., Qi, R., Zhang, Z., Fang, J., Fang, H., Song, J., Wang, M., Dong, G., Wang, G., Chen, Z., Ma, T., Liu, H., Dhungana, S. R., Huss, S. E., Yang, X., Sharma, A., Trujillo, J. H., Martinez, M. C., Hudson, M., Riascos, J. J., Schuler, M., Chen, L. Q., Braun, D. M., Li, L., Yu, Q., Wang, J., Wang, K., Schatz, M. C., Heckerman, D., Van Sluys, M. A., Souza, G. M., Moore, P. H., Sankoff, D., VanBuren, R., Paterson, A. H., Nagai, C. & Ming, R., Nov 1 2018, In : Nature Genetics. 50, 11, p. 1565-1573 9 p.

Research output: Contribution to journalArticle

Saccharum
Alleles
Genome
Chromosomes, Human, Pair 4
Disease Resistance

Alley cropping: Global patterns of species composition and function

Wolz, K. J. & Delucia, E. H., Jan 15 2018, In : Agriculture, Ecosystems and Environment. 252, p. 61-68 8 p.

Research output: Contribution to journalReview article

alley cropping
species diversity
crop
crops
fodder

Approaches and challenges to the study of loess - Introduction to the LoessFest Special Issue

Schaetzl, R. J., Bettis, E. A., Crouvi, O., Fitzsimmons, K. E., Grimley, D. A., Hambach, U., Lehmkuhl, F., Marković, S. B., Mason, J. A., Owczarek, P., Roberts, H. M., Rousseau, D. D., Stevens, T., Vandenberghe, J., Zárate, M., Veres, D., Yang, S., Zech, M., Conroy, J. L., Dave, A. K. & 8 others, Faust, D., Hao, Q., Obreht, I., Prud'Homme, C., Smalley, I., Tripaldi, A., Zeeden, C. & Zech, R., May 1 2018, In : Quaternary Research (United States). 89, 3, p. 563-618 56 p.

Research output: Contribution to journalReview article

loess
student
Loess

BETYdb: a yield, trait, and ecosystem service database applied to second-generation bioenergy feedstock production

LeBauer, D., Kooper, R., Mulrooney, P., Rohde, S., Wang, D., Long, S. P. & Dietze, M. C., Jan 2018, In : GCB Bioenergy. 10, 1, p. 61-71 11 p.

Research output: Contribution to journalArticle

bioenergy
Biofuels
feedstocks
biofuels
biofuel

Biorefinery for combined production of jet fuel and ethanol from lipid-producing sugarcane: a techno-economic evaluation

Kumar, D., Long, S. P. & Singh, V., Feb 1 2018, In : GCB Bioenergy. 10, 2, p. 92-107 16 p.

Research output: Contribution to journalArticle

biorefining
Jet fuel
economic analysis
Lipids
sugarcane

Biphasic concentration-dependent interaction between imidacloprid and dietary phytochemicals in honey bees (Apis mellifera)

Wong, M. J., Liao, L. H. & Berenbaum, M. R., Nov 2018, In : PloS one. 13, 11, e0206625.

Research output: Contribution to journalArticle

Honey
Bees
imidacloprid
Phytochemicals
Apis mellifera

Born to run? Quantifying the balance of prior bias and new information in prey escape decisions

Sutton, N. M. & O'Dwyer, J. P., Sep 1 2018, In : American Naturalist. 192, 3, p. 321-331 11 p.

Research output: Contribution to journalArticle

deer
Odocoileus virginianus
predator
escape behavior
predators

Canopy warming accelerates development in soybean and maize, offsetting the delay in soybean reproductive development by elevated CO2 concentrations

Ruiz-Vera, U. M., Siebers, M. H., Jaiswal, D., Ort, D. R. & Bernacchi, C. J., Dec 2018, In : Plant Cell and Environment. 41, 12, p. 2806-2820 15 p.

Research output: Contribution to journalArticle

Soybeans
Zea mays
carbon dioxide
canopy
soybeans

Chlorophyll can be reduced in crop canopies with little penalty to photosynthesis

Walker, B. J., Drewry, D. T., Slattery, R. A., VanLoocke, A., Cho, Y. B. & Ort, D. R., Feb 2018, In : Plant physiology. 176, 2, p. 1215-1232 18 p.

Research output: Contribution to journalArticle

Photosynthesis
Chlorophyll
photosynthesis
canopy
chlorophyll

Chromosome Nomenclature and Cytological Characterization of Sacred Lotus

Meng, Z., Hu, X., Zhang, Z., Li, Z., Lin, Q., Yang, M., Yang, P., Ming, R., Yu, Q. & Wang, K., Mar 1 2018, In : Cytogenetic and Genome Research. 153, 4, p. 223-231 9 p.

Research output: Contribution to journalArticle

Nelumbo
Terminology
China
Chromosomes
Cytogenetics

Cinema-tick experience

Berenbaum, M. R., Jun 13 2018, In : American Entomologist. 64, 2, p. 67-70 4 p.

Research output: Contribution to journalArticle

tick
ticks

Comparative analysis of homologous sequences of saccharum officinarum and saccharum spontaneum reveals independent polyploidization events

Sharma, A., Song, J., Lin, Q., Singh, R., Ramos, N., Wang, K., Zhang, J., Ming, R. & Yu, Q., Sep 25 2018, In : Frontiers in Plant Science. 9, 1414.

Research output: Contribution to journalArticle

Saccharum spontaneum
Saccharum officinarum
sequence homology
Saccharum
bacterial artificial chromosomes

Comparative CYP‐omic analysis between the DDT‐susceptible and ‐resistant Drosophila melanogaster strains 91‐C and 91‐R

Seong, K. M., Coates, B. S., Berenbaum, M. R., Clark, J. M. & Pittendrigh, B. R., Nov 2018, In : Pest Management Science. 74, 11, p. 2530-2543 14 p.

Research output: Contribution to journalArticle

DDT (pesticide)
Drosophila melanogaster
genes
amino acids
stop codon
pollen
Pollen
Lighting
Microscopy
Microscopic examination