Research Output 1975 2019

2013

Ecological Facilitation between Two Epiphytes through Drought Mitigation in a Subtropical Rainforest

Jian, P. Y., Hu, F. S., Wang, C. P., Chiang, J. M. & Lin, T. C., May 31 2013, In : PloS one. 8, 5, e64599.

Research output: Contribution to journalArticle

Drought
Droughts
epiphytes
fronds
rain forests

Effects of topography, soil type and forest age on the frequency and size distribution of canopy gap disturbances in a tropical forest

Lobo, E. & Dalling, J. W., Nov 11 2013, In : Biogeosciences. 10, 11, p. 6769-6781 13 p.

Research output: Contribution to journalArticle

canopy gap
canopy gaps
tropical forests
tropical forest
topography

Energy and carbon accounting to compare bioenergy crops

Borak, B., Ort, D. R. & Burbaum, J. J., Jun 1 2013, In : Current Opinion in Biotechnology. 24, 3, p. 369-375 7 p.

Research output: Contribution to journalReview article

Biofuels
Solar Energy
Crops
Carbon
Solar energy

ENSO signature in botanical proxy time series extends terrestrial El Niño record into the (sub)tropics

Donders, T. H., Punyasena, S. W., De Boer, H. J. & Wagner-Cremer, F., Nov 16 2013, In : Geophysical Research Letters. 40, 21, p. 5776-5781 6 p.

Research output: Contribution to journalArticle

Southern Oscillation
tropical regions
pollen
winter
signatures

e-photosynthesis: A comprehensive dynamic mechanistic model of C3 photosynthesis: From light capture to sucrose synthesis

Zhu, X. G., Wang, Y., Ort, D. R. & Long, S. P., Sep 1 2013, In : Plant, Cell and Environment. 36, 9, p. 1711-1727 17 p.

Research output: Contribution to journalArticle

C3 photosynthesis
mechanistic models
Photosynthesis
dynamic models
Sucrose

Future carbon dioxide concentration decreases canopy evapotranspiration and soil water depletion by field-grown maize

Hussain, M. Z., Vanloocke, A., Siebers, M. H., Ruiz-Vera, U. M., Cody Markelz, R. J., Leakey, A., Ort, D. R. & Bernacchi, C., May 1 2013, In : Global change biology. 19, 5, p. 1572-1584 13 p.

Research output: Contribution to journalArticle

Evapotranspiration
Photosynthesis
Carbon Dioxide
Crops
evapotranspiration

Gap filling strategies and error in estimating annual soil respiration

Gomez-Casanovas, N., Anderson-Teixeira, K., Zeri, M., Bernacchi, C. J. & Delucia, E. H., Jun 1 2013, In : Global change biology. 19, 6, p. 1941-1952 12 p.

Research output: Contribution to journalArticle

soil respiration
Soils
Systematic errors
soil temperature
interpolation

Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.)

Ming, R., VanBuren, R., Liu, Y., Yang, M., Han, Y., Li, L. T., Zhang, Q., Kim, M. J., Schatz, M. C., Campbell, M., Li, J., Bowers, J. E., Tang, H., Lyons, E., Ferguson, A. A., Narzisi, G., Nelson, D. R., Blaby-Haas, C. E., Gschwend, A. R., Jiao, Y. & 51 others, Der, J. P., Zeng, F., Han, J., Min, X. J., Hudson, K. A., Singh, R., Grennan, A. K., Karpowicz, S. J., Watling, J. R., Ito, K., Robinson, S. A., Hudson, M. E., Yu, Q., Mockler, T. C., Carroll, A., Zheng, Y., Sunkar, R., Jia, R., Chen, N., Arro, J., Wai, C. M., Wafula, E., Spence, A., Han, Y., Xu, L., Zhang, J., Peery, R., Haus, M. J., Xiong, W., Walsh, J. A., Wu, J., Wang, M. L., Zhu, Y. J., Paull, R. E., Britt, A. B., Du, C., Downie, S. R., Schuler, M. A., Michael, T. P., Long, S. P., Ort, D. R., William Schopf, J., Gang, D. R., Jiang, N., Yandell, M., dePamphilis, C. W., Merchant, S. S., Paterson, A. H., Buchanan, B. B., Li, S. & Shen-Miller, J., May 10 2013, In : Genome biology. 14, 5, R41.

Research output: Contribution to journalArticle

Nelumbo
Nelumbo nucifera
Lotus
genome
Genome

Genome size variation among sex types in dioecious and trioecious Caricaceae species

Gschwend, A. R., Wai, C. M., Zee, F., Arumuganathan, A. K. & Ming, R., Jan 1 2013, In : Euphytica. 189, 3, p. 461-469 9 p.

Research output: Contribution to journalArticle

Caricaceae
Genome Size
Carica
Sex Chromosomes
genome

Genome-Wide Analysis of MicroRNAs in Sacred Lotus, Nelumbo nucifera (Gaertn)

Zheng, Y., Jagadeeswaran, G., Gowdu, K., Wang, N., Li, S., Ming, R. & Sunkar, R., Sep 1 2013, In : Tropical Plant Biology. 6, 2-3, p. 117-130 14 p.

Research output: Contribution to journalArticle

Nelumbo
Nelumbo nucifera
Lotus
MicroRNAs
microRNA
Nelumbo
Embryophyta
Nelumbo nucifera
vpr Genes
Disease Resistance

Global warming can negate the expected CO2 stimulation in photosynthesis and productivity for soybean grown in the midwestern United States

Ruiz-Vera, U. M., Siebers, M., Gray, S. B., Drag, D. W., Rosenthal, D. M., Kimball, B. A., Ort, D. R. & Bernacchi, C. J., May 1 2013, In : Plant physiology. 162, 1, p. 410-423 14 p.

Research output: Contribution to journalArticle

Midwestern United States
Global Warming
Photosynthesis
Soybeans
global warming

Gravity persistent signal 1 (GPS1) reveals novel cytochrome P450s involved in Gravitropism

Withers, J. C., Shipp, M. J., Rupasinghe, S. G., Sukumar, P., Schuler, M. A., Muday, G. K. & Wyatt, S. E., Jan 1 2013, In : American journal of botany. 100, 1, p. 183-193 11 p.

Research output: Contribution to journalArticle

Gravitropism
gravitropism
Gravitation
Cytochromes
cytochromes

Habitat filtering across tree life stages in tropical forest communities

Baldeck, C. A., Harms, K. E., Yavitt, J. B., John, R., Turner, B. L., Valencia, R., Navarrete, H., Bunyavejchewin, S., Kiratiprayoon, S., Yaacob, A., Supardi, M. N. N., Davies, S. J., Hubbell, S. P., Chuyong, G. B., Kenfack, D., Thomas, D. W. & Dalling, J. W., Aug 7 2013, In : Proceedings of the Royal Society B: Biological Sciences. 280, 1766, 20130548.

Research output: Contribution to journalArticle

forest communities
tropical forests
tropical forest
Ecosystem
habitat

Haplotype analysis of sucrose synthase gene family in three Saccharum species

Zhang, J., Arro, J., Chen, Y. & Ming, R. R., May 10 2013, In : BMC genomics. 14, 1, 314.

Research output: Contribution to journalArticle

Saccharum
Haplotypes
Single Nucleotide Polymorphism
Genes
Uridine Diphosphate Glucose

Herbivore induction of jasmonic acid and chemical defences reduce photosynthesis in Nicotiana attenuata

Nabity, P. D., Zavala, J. A. & Delucia, E. H., Jan 1 2013, In : Journal of experimental botany. 64, 2, p. 685-694 10 p.

Research output: Contribution to journalArticle

Herbivory
Photosynthesis
jasmonic acid
Tobacco
herbivores
Honey
Bees
Immunity
Up-Regulation
Pollen

Identification and functional analysis of tomato BRI1 and BAK1 receptor kinase phosphorylation sites

Bajwa, V. S., Wang, X., Kevin Blackburn, R., Goshe, M. B., Mitra, S. K., Williams, E. L., Bishop, G. J., Krasnyanski, S., Allen, G., Huber, S. C. & Clouse, S. D., Sep 1 2013, In : Plant physiology. 163, 1, p. 30-42 13 p.

Research output: Contribution to journalArticle

Brassinosteroids
brassinosteroids
Lycopersicon esculentum
phosphorylation
phosphotransferases (kinases)

Identification and genes expression analysis of ATP-dependent phosphofructokinase family members among three Saccharum species

Zhu, L., Zhang, J., Chen, Y., Pan, H. & Ming, R. R., Apr 29 2013, In : Functional Plant Biology. 40, 4, p. 369-378 10 p.

Research output: Contribution to journalArticle

phosphofructokinases
Saccharum
sugarcane
gene expression
sucrose

Impact of Ca 2+ on structure of soybean CDPKβ and accessibility of the Tyr-24 autophosphorylation site

Oh, M. H., Wu, X. & Huber, S. C., Jan 1 2013, In : Plant Signaling and Behavior. 8, 12, e27671.

Research output: Contribution to journalArticle

dephosphorylation
protein phosphorylation
dual-specificity kinase
soybeans
protein-tyrosine-phosphatase

Impact of elevated CO2 and increased temperature on Japanese beetle herbivory

Niziolek, O. K., Berenbaum, M. R. & Delucia, E. H., Aug 1 2013, In : Insect Science. 20, 4, p. 513-523 11 p.

Research output: Contribution to journalArticle

Popillia japonica
Herbivory
Beetles
herbivory
beetle

Impacts of elevated CO2 concentration on the productivity and surface energy budget of the soybean and maize agroecosystem in the Midwest USA

Twine, T. E., Bryant, J. J., T. Richter, K., Bernacchi, C., Mcconnaughay, K. D., Morris, S. J. & Leakey, A., Sep 1 2013, In : Global change biology. 19, 9, p. 2838-2852 15 p.

Research output: Contribution to journalArticle

agricultural ecosystem
surface energy
energy budget
Interfacial energy
soybean

Impacts of herbaceous bioenergy crops on atmospheric volatile organic composition and potential consequences for global climate change

Miresmailli, S., Zeri, M., Zangerl, A. R., Bernacchi, C., Berenbaum, M. R. & Delucia, E. H., Jul 2013, In : GCB Bioenergy. 5, 4, p. 375-383 9 p.

Research output: Contribution to journalArticle

volatile organic compounds
energy crops
bioenergy
Volatile organic compounds
Climate change

Influence of terrestrial vegetation on leaf wax δD of Holocene lake sediments

Nelson, D. M., Henderson, A. K., Huang, Y. & Hu, F. S., Mar 1 2013, In : Organic Geochemistry. 56, p. 106-110 5 p.

Research output: Contribution to journalArticle

wax
Lakes
lacustrine deposit
Sediments
Carboxylic acids

Insects as cat toys

Berenbaum, M. R., Jun 1 2013, In : American Entomologist. 59, 2, p. 68-69 2 p.

Research output: Contribution to journalArticle

toys
insect
cats
insects

Leaf-galling phylloxera on grapes reprograms host metabolism and morphology

Nabity, P. D., Haus, M. J., Berenbaum, M. R. & DeLucia, E. H., Oct 8 2013, In : Proceedings of the National Academy of Sciences of the United States of America. 110, 41, p. 16663-16668 6 p.

Research output: Contribution to journalArticle

Vitis
Insects
Phenotype
Gene Expression
Parasites

Minirhizotron imaging reveals that nodulation of field-grown soybean is enhanced by free-air CO2 enrichment only when combined with drought stress

Gray, S. B., Strellner, R. S., Puthuval, K. K., Ng, C., Shulman, R. E., Siebers, M. H., Rogers, A. & Leakey, A., Feb 20 2013, In : Functional Plant Biology. 40, 2, p. 137-147 11 p.

Research output: Contribution to journalArticle

nodulation
water stress
carbon dioxide
image analysis
soybeans

Modelling C3 photosynthesis from the chloroplast to the ecosystem

Bernacchi, C. J., Bagley, J. E., Serbin, S. P., Ruiz-Vera, U. M., Rosenthal, D. M. & Vanloocke, A., Sep 1 2013, In : Plant, Cell and Environment. 36, 9, p. 1641-1657 17 p.

Research output: Contribution to journalArticle

C3 photosynthesis
Photosynthesis
Chloroplasts
Ecosystem
chloroplasts

Moth diversity in three biofuel crops and native prairie in Illinois

Harrison, T. & Berenbaum, M. R., Jun 1 2013, In : Insect Science. 20, 3, p. 407-419 13 p.

Research output: Contribution to journalArticle

Biofuels
Moths
energy crops
biofuel
prairies

New insights into the phylogeny of angelica and its allies (apiaceae) with emphasis on east Asian species, inferred from nrDNA, cpDNA, and morphological evidence

Liao, C., Downie, S. R., Li, Q., Yu, Y., He, X. & Zhou, B., Feb 1 2013, In : Systematic Botany. 38, 1, p. 266-281 16 p.

Research output: Contribution to journalArticle

Angelica
Apiaceae
Phylogeny
chloroplast DNA
phylogeny

Northwestern North America

Gavin, D. G. & Hu, F. S., Jan 1 2013, Encyclopedia of Quaternary Science: Second Edition. Elsevier Inc., p. 124-132 9 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

vegetation
Cordilleran Ice Sheet
Holocene
climate
history

Not your Father's patronym

Berenbaum, M. R., Jun 1 2013, In : American Entomologist. 60, 2, p. 68-70 3 p.

Research output: Contribution to journalArticle

fathers
Volume rendering
Charcoal
confocal laser scanning microscopy
rendering
charcoal

Nucleotide Composition of the Nelumbo nucifera Genome

Singh, R., Ming, R. R. & Yu, Q., Sep 1 2013, In : Tropical Plant Biology. 6, 2-3, p. 85-97 13 p.

Research output: Contribution to journalArticle

Nelumbo
Nelumbo nucifera
Lotus
Nucleotides
nucleotides

One hundred years of solitude: Integrating single-strain inoculations with community perspectives in the legume-rhizobium symbiosis

Friesen, M. L. & Heath, K. D., Apr 1 2013, In : New Phytologist. 198, 1, p. 7-9 3 p.

Research output: Contribution to journalLetter

Biological Evolution
Genetic Fitness
Rhizobium
Symbiosis
mutualism

Organelle DNA accumulation in the recently evolved papaya sex chromosomes

Vanburen, R. & Ming, R., Jun 1 2013, In : Molecular Genetics and Genomics. 288, 5-6, p. 277-284 8 p.

Research output: Contribution to journalArticle

Carica
Sex Chromosomes
Organelles
Genetic Recombination
Chloroplast DNA

Predicting Greenhouse Gas Emissions and Soil Carbon from Changing Pasture to an Energy Crop

Duval, B. D., Anderson-Teixeira, K. J., Davis, S. C., Keogh, C., Long, S. P., Parton, W. J. & DeLucia, E. H., Aug 21 2013, In : PloS one. 8, 8, e72019.

Research output: Contribution to journalArticle

Canes
energy crops
greenhouse gas emissions
canes
Gas emissions

Predicting invasion in grassland ecosystems: Is exotic dominance the real embarrassment of richness?

Seabloom, E. W., Borer, E. T., Buckley, Y., Cleland, E. E., Davies, K., Firn, J., Harpole, W. S., Hautier, Y., Lind, E., Macdougall, A., Orrock, J. L., Prober, S. M., Adler, P., Alberti, J., Michael Anderson, T., Bakker, J. D., Biederman, L. A., Blumenthal, D., Brown, C. S., Brudvig, L. A. & 53 others, Caldeira, M., Chu, C., Crawley, M. J., Daleo, P., Damschen, E. I., D'Antonio, C. M., Decrappeo, N. M., Dickman, C. R., Du, G., Fay, P. A., Frater, P., Gruner, D. S., Hagenah, N., Hector, A., Helm, A., Hillebrand, H., Hofmockel, K. S., Humphries, H. C., Iribarne, O., Jin, V. L., Kay, A., Kirkman, K. P., Klein, J. A., Knops, J. M. H., La Pierre, K. J., Ladwig, L. M., Lambrinos, J. G., Leakey, A. D. B., Li, Q., Li, W., Mcculley, R., Melbourne, B., Mitchell, C. E., Moore, J. L., Morgan, J., Mortensen, B., O'Halloran, L. R., Pärtel, M., Pascual, J., Pyke, D. A., Risch, A. C., Salguero-Gómez, R., Sankaran, M., Schuetz, M., Simonsen, A., Smith, M., Stevens, C., Sullivan, L., Wardle, G. M., Wolkovich, E. M., Wragg, P. D., Wright, J. & Yang, L., Dec 1 2013, In : Global change biology. 19, 12, p. 3677-3687 11 p.

Research output: Contribution to journalArticle

Land use
Ecosystems
Nutrients
grass
nutrient limitation

Recent burning of boreal forests exceeds fire regime limits of the past 10,000 years

Kelly, R., Chipman, M. L., Higuera, P. E., Stefanova, I., Brubaker, L. B. & Hu, F. S., Aug 6 2013, In : Proceedings of the National Academy of Sciences of the United States of America. 110, 32, p. 13055-13060 6 p.

Research output: Contribution to journalArticle

Charcoal
Climate
Taiga
Biomass
Ecosystem

Reconstructing patterns of temperature, phenology, and frost damage over 124 years: Spring damage risk is increasing

Augspurger, C. K., Jan 1 2013, In : Ecology. 94, 1, p. 41-50 10 p.

Research output: Contribution to journalArticle

frost injury
frost
phenology
damage
temperature

Reduced nitrogen losses after conversion of row crop agriculture to perennial biofuel crops

Smith, C. M., David, M. B., Mitchell, C. A., Masters, M. D., Anderson-Teixeira, K. J., Bernacchi, C. J. & DeLucia, E. H., Jan 1 2013, In : Journal of Environmental Quality. 42, 1, p. 219-228 10 p.

Research output: Contribution to journalArticle

Biofuels
biofuel
Agriculture
Crops
maize

Rice P450 reductases differentially affect P450-mediated metabolism in bacterial expression systems

Park, S., Kim, Y. S., Rupasinghe, S. G., Schuler, M. A. & Back, K., Mar 1 2013, In : Bioprocess and Biosystems Engineering. 36, 3, p. 325-331 7 p.

Research output: Contribution to journalArticle

Trans-Cinnamate 4-Monooxygenase
Metabolism
Oxidoreductases
Cloning
Escherichia coli

Role of arthropod communities in bioenergy crop litter decomposition†

Zangerl, A. R., Miresmailli, S., Nabity, P., Lawrance, A., Yanahan, A., Mitchell, C. A., Anderson-Teixeira, K. J., David, M. B., Berenbaum, M. R. & Delucia, E. H., Oct 1 2013, In : Insect Science. 20, 5, p. 671-678 8 p.

Research output: Contribution to journalArticle

arthropod communities
Arthropods
energy crops
bioenergy
arthropod

Salicylic acid-mediated reductions in yield in Nicotiana attenuata challenged by aphid herbivory

Donovan, M. P., Nabity, P. D. & Delucia, E. H., Feb 1 2013, In : Arthropod-Plant Interactions. 7, 1, p. 45-52 8 p.

Research output: Contribution to journalArticle

salicylic acid
aphid
herbivory
Aphidoidea
herbivores

Secretome Prediction and Analysis in Sacred Lotus (Nelumbo nucifera Gaertn.)

Lum, G., VanBuren, R., Ming, R. R. & Min, X. J., Sep 1 2013, In : Tropical Plant Biology. 6, 2-3, p. 131-137 7 p.

Research output: Contribution to journalArticle

Nelumbo
Nelumbo nucifera
Lotus
prediction
Proteins

Semi-automated segmentation of pollen grains in microscopic images: A tool for three imaging modes

Johnsrud, S., Yang, H., Nayak, A. & Punyasena, S. W., Jun 4 2013, In : Grana. 52, 3, p. 181-191 11 p.

Research output: Contribution to journalArticle

segmentation
pollen
image analysis
fluorescence
wavelengths

Siculosciadium, a new monotypic genus of Apiaceae from Sicily

Brullo, C., Brullo, S., Downie, S. R., Danderson, C. A. & Del Galdo, G. G., Jul 1 2013, In : Annals of the Missouri Botanical Garden. 99, 1, p. 1-18 18 p.

Research output: Contribution to journalArticle

Apiaceae
Sicily
new genus
Peucedanum
phylogenetics

Soil resources and topography shape local tree community structure in tropical forests

Baldeck, C. A., Harms, K. E., Yavitt, J. B., John, R., Turner, B. L., Valencia, R., Navarrete, H., Davies, S. J., Chuyong, G. B., Kenfack, D., Thomas, D. W., Madawala, S., Gunatilleke, N., Gunatilleke, S., Bunyavejchewin, S., Kiratiprayoon, S., Yaacob, A., Nur Supardi, M. N. & Dalling, J. W., Feb 2013, In : Proceedings of the Royal Society B: Biological Sciences. 280, 1753, 20122532.

Research output: Contribution to journalArticle

soil resources
Topography
tropical forests
tropical forest
topography

Soybean leaf hydraulic conductance does not acclimate to growth at elevated [CO2] or temperature in growth chambers or in the field

Locke, A. M., Sack, L., Bernacchi, C. J. & Ort, D. R., Sep 1 2013, In : Annals of botany. 112, 5, p. 911-918 8 p.

Research output: Contribution to journalArticle

growth chambers
fluid mechanics
carbon dioxide
soybeans
gas exchange

Special issue on plant computational biology

Long, S. P. & Stitt, M., Sep 1 2013, In : Plant, Cell and Environment. 36, 9, p. 1573-1574 2 p.

Research output: Contribution to journalArticle

plant biology
Computational Biology
bioinformatics
Biological Sciences