Research Output 1971 2019

2019

Increased temperatures may safeguard the nutritional quality of crops under future elevated CO2 concentrations

Köhler, I. H., Huber, S. C., Bernacchi, C. & Baxter, I. R., Mar 2019, In : Plant Journal. 97, 5, p. 872-886 15 p.

Research output: Contribution to journalArticle

Nutritive Value
nutritive value
carbon dioxide
Seeds
Temperature
Computer Simulation
Computing Methodologies
DNA Shuffling
Genome
Technology

Invasive perennial forb effects on gross soil nitrogen cycling and nitrous oxide fluxes depend on phenology

Portier, E., Silver, W. L. & Yang, W., Jul 2019, In : Ecology. 100, 7, e02716.

Research output: Contribution to journalArticle

soil nitrogen
nitrous oxide
phenology
Lepidium latifolium
nitrogen

In vivo evidence for a regulatory role of phosphorylation of Arabidopsis Rubisco activase at the Thr78 site

Kim, S. Y., Harvey, C. M., Giese, J., Lassowskat, I., Singh, V., Cavanagh, A. P., Spalding, M. H., Finkemeier, I., Ort, D. R. & Huber, S. C., Sep 10 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 37, p. 18723-18731 9 p.

Research output: Contribution to journalArticle

Open Access
Ribulose-Bisphosphate Carboxylase
Tissue Plasminogen Activator
Threonine
Phosphorylation
Light

Iron Redox Reactions Can Drive Microtopographic Variation in Upland Soil Carbon Dioxide and Nitrous Oxide Emissions

Krichels, A. H., Sipic, E. & Yang, W. H., Aug 29 2019, In : Soil Systems. 3, 3, 60.

Research output: Contribution to journalArticle

Open Access
nitrous oxide
soil carbon
carbon dioxide
iron
soil

Karyotype variations among date palm (Phoenix dactylifera L.) cultivars of Sindh, Pakistan

Jatt, T., Markhand, G. S., Rayburn, L., Ming, R., Jatoi, M. A. & Mirbahar, A. A., Jan 1 2019, In : Sarhad Journal of Agriculture. 35, 3, p. 708-718 11 p.

Research output: Contribution to journalArticle

Open Access
Phoenix dactylifera
Pakistan
Karyotype
karyotyping
Chromosomes
oviposition deterrents
Oviposition
Edible Plants
plant fats and oils
Plant Oils

Laserocarpum, a new genus of Apiaceae endemic to Greece

Spalik, K., Wojewódzka, A., Constantinidis, T., Downie, S. R., Gierek, M. & Banasiak, Ł., Jan 1 2019, In : Acta Societatis Botanicorum Poloniae. 88, 3, 3635.

Research output: Contribution to journalArticle

Open Access
Portenschlagiella
Laserpitium
Apiaceae
Greece
new genus
Herbivory
chemical defense
Photosynthesis
Arabidopsis
herbivory

Metabolite and transcript profiling of Guinea grass (Panicum maximum Jacq) response to elevated [CO 2 ] and temperature

Wedow, J. M., Yendrek, C. R., Mello, T. R., Creste, S., Martinez, C. A. & Ainsworth, E. A., Apr 1 2019, In : Metabolomics. 15, 4, 51.

Research output: Contribution to journalArticle

Open Access
Guinea
Panicum
Carbon Monoxide
Metabolites
Poaceae

Microtopographic differences in soil properties and microbial community composition at the field scale

Suriyavirun, N., Krichels, A. H., Kent, A. D. & Yang, W. H., Apr 2019, In : Soil Biology and Biochemistry. 131, p. 71-80 10 p.

Research output: Contribution to journalArticle

community composition
microbial communities
microbial community
soil properties
soil property

Mitochondrial genome in Hypsizygus marmoreus and its evolution in Dikarya

Wang, G., Lin, J., Shi, Y., Chang, X., Wang, Y., Guo, L., Wang, W., Dou, M., Deng, Y., Ming, R. & Zhang, J., Oct 22 2019, In : BMC genomics. 20, 1, 1 p.

Research output: Contribution to journalArticle

Open Access
Mitochondrial Genome
Gene Order
Agaricales
Mitochondria
Tricholoma

Molecular Basis of the Glucose Transport Mechanism in Plants

Selvam, B., Yu, Y. C., Chen, L. & Shukla, D., Jun 26 2019, In : ACS Central Science. 5, 6, p. 1085-1096 12 p.

Research output: Contribution to journalArticle

Open Access
Facings
Glucose
Sugars
Free energy
Molecular dynamics

Nanodiscs as a New Tool to Examine Lipid–Protein Interactions

Denisov, I. G., Schuler, M. A. & Sligar, S., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 645-671 27 p. (Methods in Molecular Biology; vol. 2003).

Research output: Chapter in Book/Report/Conference proceedingChapter

Lipids
Lipoproteins
Proteins
Membranes
Protein Transport

Nutrient Release From Permafrost Thaw Enhances CH4 Emissions From Arctic Tundra Wetlands

Lara, M. J., Lin, D. H., Andresen, C., Lougheed, V. L. & Tweedie, C. E., Jun 2019, In : Journal of Geophysical Research: Biogeosciences. 124, 6, p. 1560-1573 14 p.

Research output: Contribution to journalArticle

tundra
permafrost
wetlands
Permafrost
nutrients

Optimization of PCR primers to detect phylogenetically diverse nrfA genes associated with nitrite ammonification

Cannon, J., Sanford, R. A., Connor, L., Yang, W. & Chee-Sanford, J., May 2019, In : Journal of Microbiological Methods. 160, p. 49-59 11 p.

Research output: Contribution to journalArticle

Open Access
Nitrites
Polymerase Chain Reaction
nitrate reductase (cytochrome)
Ammonium Compounds
Nitrates

Out of Order

Berenbaum, M. R., Mar 12 2019, In : American Entomologist. 65, 1, p. 3-5 3 p.

Research output: Contribution to journalArticle

Papaya CpbHLH1/2 regulate carotenoid biosynthesis-related genes during papaya fruit ripening

Zhou, D., Shen, Y., Zhou, P., Fatima, M., Lin, J., Yue, J., Zhang, X., Chen, L. Y. & Ming, R. R., Dec 1 2019, In : Horticulture Research. 6, 1, 80.

Research output: Contribution to journalArticle

Open Access
Carica
Biosynthesis
papayas
Carotenoids
Fruits

Papaya sex chromosome evolution and domestication

Zerpa-Catanho, D. P. & Ming, R., Jan 1 2019, In : Acta Horticulturae. 1250, p. 129-137 9 p.

Research output: Contribution to journalArticle

sex chromosomes
papayas
domestication
Y chromosome
X chromosome

Partitioning the effects of deterministic and stochastic processes on species extinction risk

Fung, T., O'Dwyer, J. P. & Chisholm, R. A., Apr 2019, In : Ecological Complexity. 38, p. 156-167 12 p.

Research output: Contribution to journalArticle

extinction risk
stochastic processes
stochasticity
extinction
partitioning

Performance of laser-based electronic devices for structural analysis of Amazonian terra-firme forests

Pereira, I. S., do Nascimento, H. E. M., Vicari, M. B., Disney, M., DeLucia, E. H., Domingues, T., Kruijt, B., Lapola, D., Meir, P., Norby, R. J., Ometto, J. P. H. B., Quesada, C. A., Rammig, A. & Hofhansl, F., Mar 1 2019, In : Remote Sensing. 11, 5, 510.

Research output: Contribution to journalArticle

Open Access
structural analysis
laser
aboveground biomass
biomass
vegetation

Perspective: Understanding the Intersection of Climate/Environmental Change, Health, Agriculture, and Improved Nutrition - A Case Study: Type 2 Diabetes

Finley, J., Jaacks, L. M., Peters, C. J., Ort, D. R., Aimone, A. M., Conrad, Z. & Raiten, D. J., Sep 1 2019, In : Advances in Nutrition. 10, 5, p. 731-738 8 p.

Research output: Contribution to journalReview article

Open Access
Environmental Health
Climate Change
Agriculture
noninsulin-dependent diabetes mellitus
Type 2 Diabetes Mellitus

Phenotyping photosynthesis on the limit - a critical examination of RACiR

Taylor, S. H. & Long, S. P., Jan 1 2019, In : The New phytologist. 221, 2, p. 621-624 4 p.

Research output: Contribution to journalLetter

Open Access
Ribulose-Bisphosphate Carboxylase
Photosynthesis
ribulose-bisphosphate carboxylase
global change
photosynthesis

Photosynthesis across African cassava germplasm is limited by Rubisco and mesophyll conductance at steady state, but by stomatal conductance in fluctuating light

De Souza, A. P., Wang, Y., Orr, D. J., Carmo-Silva, E. & Long, S. P., Jan 1 2019, (Accepted/In press) In : New Phytologist.

Research output: Contribution to journalArticle

Open Access
Ribulose-Bisphosphate Carboxylase
Manihot
Photosynthesis
ribulose-bisphosphate carboxylase
cassava

Plant Networks as Traits and Hypotheses: Moving Beyond Description

Marshall-Colon, A. & Kliebenstein, D. J., Sep 2019, In : Trends in Plant Science. 24, 9, p. 840-852 13 p.

Research output: Contribution to journalReview article

Biological Sciences
organisms
phenotype
gene interaction
linkage (genetics)

Population structure of Miscanthus sacchariflorus reveals two major polyploidization events, tetraploid-mediated unidirectional introgression from diploid M. sinensis, and diversity centred around the Yellow Sea

Clark, L. V., Jin, X., Petersen, K. K., Anzoua, K. G., Bagmet, L., Chebukin, P., Deuter, M., Dzyubenko, E., Dzyubenko, N., Heo, K., Johnson, D. A., Jørgensen, U., Kjeldsen, J. B., Nagano, H., Peng, J., Sabitov, A., Yamada, T., Yoo, J. H., Yu, C. Y., Long, S. P. & 1 others, Sacks, E. J., Oct 29 2019, In : Annals of botany. 124, 4, p. 731-748 18 p.

Research output: Contribution to journalArticle

Open Access
Miscanthus sacchariflorus
Miscanthus sinensis
Yellow Sea
introgression
tetraploidy

Predicting light-induced stomatal movements based on the redox state of plastoquinone: theory and validation

Kromdijk, J., Głowacka, K. & Long, S. P., Jul 1 2019, In : Photosynthesis research. 141, 1, p. 83-97 15 p.

Research output: Contribution to journalArticle

Plastoquinone
stomatal movement
Oxidation-Reduction
Light
stomatal conductance

Recent polyploidization events in three Saccharum founding species

Zhang, J., Zhang, Q., Li, L., Tang, H., Zhang, Q., Chen, Y., Arrow, J., Zhang, X., Wang, A., Miao, C. & Ming, R. R., Jan 2019, In : Plant Biotechnology Journal. 17, 1, p. 264-274 11 p.

Research output: Contribution to journalArticle

Saccharum
Genome
genome
Sorghum
linkage groups

Reply to: Brazilian ethanol expansion subject to limitations

Jaiswal, D., De Souza, A. P., Larsen, S., LeBauer, D. S., Miguez, F. E., Sparovek, G., Bollero, G. A., Buckeridge, M. S. & Long, S. P., Mar 1 2019, In : Nature Climate Change. 9, 3, p. 211-212 2 p.

Research output: Contribution to journalLetter

ethanol

Resilience of lake biogeochemistry to boreal-forest wildfires during the late Holocene

Chipman, M. L. & Hu, F. S., Aug 1 2019, In : Biology Letters. 15, 8, 20190390.

Research output: Contribution to journalArticle

biogeochemistry
Lakes
wildfires
boreal forests
lakes

Rethinking long-term vegetation dynamics: multiple glacial refugia and local expansion of a species complex

Napier, J. D., de Lafontaine, G., Heath, K. D. & Hu, F. S., May 2019, In : Ecography. 42, 5, p. 1056-1067 12 p.

Research output: Contribution to journalArticle

Alnus
vegetation dynamics
species complex
refugium
refuge habitats
Open Access
nitrate reduction
sequence alignment
ammonification
nitrites
amino acids

Siberian Miscanthus sacchariflorus accessions surpass the exceptional chilling tolerance of the most widely cultivated clone of Miscanthus x giganteus

Pignon, C. P., Spitz, I., Sacks, E. J., Jørgensen, U., Kørup, K. & Long, S. P., Jul 2019, In : GCB Bioenergy. 11, 7, p. 883-894 12 p.

Research output: Contribution to journalArticle

Open Access
Miscanthus sacchariflorus
Miscanthus giganteus
Chilling
cold tolerance
clone

Soil and species effects on bark nutrient storage in a premontane tropical forest

Jones, J. M., Heineman, K. D. & Dalling, J. W., Jan 1 2019, In : Plant and Soil.

Research output: Contribution to journalArticle

tropical forests
bark
tropical forest
nutrient
nutrients

Spatial scale affects novel and disappeared climate change projections in Alaska

Morrison, B. D., Heath, K. & Greenberg, J. A., Jan 1 2019, (Accepted/In press) In : Ecology and Evolution.

Research output: Contribution to journalArticle

Open Access
climate change
climate
Last Glacial Maximum
downscaling
ecological impact

Speaking of gender bias

Berenbaum, M. R., Apr 23 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 17, p. 8086-8088 3 p.

Research output: Contribution to journalReview article

Open Access

Species-specific effects of phosphorus addition on tropical tree seedling response to elevated CO2

Thompson, J. B., Slot, M., Dalling, J. W., Winter, K., Turner, B. L. & Zalamea, P. C., Oct 1 2019, In : Functional Ecology. 33, 10, p. 1871-1881 11 p.

Research output: Contribution to journalArticle

transpiration
seedling
phosphorus
seedlings
tropical forests
Depressaria pastinacella
Pastinaca
psoralens
substrate specificity
Substrate Specificity
Last Glacial Maximum
surface wind
wind direction
ice
ice sheet

Synthetic glycolate metabolism pathways stimulate crop growth and productivity in the field

South, P. F., Cavanagh, A. P., Liu, H. W. & Ort, D. R., Jan 4 2019, In : Science. 363, 6422, eaat9077.

Research output: Contribution to journalArticle

glycolic acid
Chloroplasts
Growth
Metabolic Networks and Pathways
Oxygenases

Target enrichment sequencing of 307 germplasm accessions identified ancestry of ancient and modern hybrids and signatures of adaptation and selection in sugarcane (Saccharum spp.), a ‘sweet’ crop with ‘bitter’ genomes

Yang, X., Song, J., Todd, J., Peng, Z., Paudel, D., Luo, Z., Ma, X., You, Q., Hanson, E., Zhao, Z., Zhao, Y., Zhang, J., Ming, R. R. & Wang, J., Feb 1 2019, In : Plant Biotechnology Journal. 17, 2, p. 488-498 11 p.

Research output: Contribution to journalArticle

Saccharum
sugarcane
germplasm
ancestry
Genome

The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication

Zhuang, W., Chen, H., Yang, M., Wang, J., Pandey, M. K., Zhang, C., Chang, W. C., Zhang, L., Zhang, X., Tang, R., Garg, V., Wang, X., Tang, H., Chow, C. N., Wang, J., Deng, Y., Wang, D., Khan, A. W., Yang, Q., Cai, T. & 58 others, Bajaj, P., Wu, K., Guo, B., Zhang, X., Li, J., Liang, F., Hu, J., Liao, B., Liu, S., Chitikineni, A., Yan, H., Zheng, Y., Shan, S., Liu, Q., Xie, D., Wang, Z., Khan, S. A., Ali, N., Zhao, C., Li, X., Luo, Z., Zhang, S., Zhuang, R., Peng, Z., Wang, S., Mamadou, G., Zhuang, Y., Zhao, Z., Yu, W., Xiong, F., Quan, W., Yuan, M., Li, Y., Zou, H., Xia, H., Zha, L., Fan, J., Yu, J., Xie, W., Yuan, J., Chen, K., Zhao, S., Chu, W., Chen, Y., Sun, P., Meng, F., Zhuo, T., Zhao, Y., Li, C., He, G., Zhao, Y., Wang, C., Kavikishor, P. B., Pan, R. L., Paterson, A. H., Wang, X., Ming, R. & Varshney, R. K., May 1 2019, In : Nature Genetics. 51, 5, p. 865-876 12 p.

Research output: Contribution to journalArticle

Open Access
Polyploidy
Karyotype
Fabaceae
Genome
Seeds

The hydrological response of surface water to recent climate variability: A remote sensing case study from the central tropical Pacific

Higley, M. C. & Conroy, J., Jul 30 2019, In : Hydrological Processes. 33, 16, p. 2227-2239 13 p.

Research output: Contribution to journalArticle

hydrological response
remote sensing
surface water
climate
sea level change

The influence of rising tropospheric carbon dioxide and ozone on plant productivity

Ainsworth, E. A., Lemonnier, P. & Wedow, J. M., Jan 1 2019, In : Plant Biology.

Research output: Contribution to journalReview article

Open Access
ozone
carbon dioxide
pollutants
productivity
terrestrial ecosystem

The papaya genome project: Fruitful insights, a decade later

Nguyen, J. K. & Ming, R., Jan 1 2019, In : Acta Horticulturae. 1250, p. 111-121 11 p.

Research output: Contribution to journalArticle

papayas
Y chromosome
genome
domestication
chromosomes

The Role of Management on Methane Emissions From Subtropical Wetlands Embedded in Agricultural Ecosystems

DeLucia, N. J., Gomez-Casanovas, N., Boughton, E. H. & Bernacchi, C., Sep 1 2019, In : Journal of Geophysical Research: Biogeosciences. 124, 9, p. 2694-2708 15 p.

Research output: Contribution to journalArticle

wetlands
Methane
ecosystems
Wetlands
agricultural ecosystem

Uncovering hidden genetic variation in photosynthesis of field-grown maize under ozone pollution

Choquette, N. E., Ogut, F., Wertin, T. M., Montes, C. M., Sorgini, C. A., Morse, A. M., Brown, P. J., Leakey, A. D. B., Mcintyre, L. M. & Ainsworth, E. A., Oct 1 2019, In : Global change biology. 25, 12, p. 4327-4338

Research output: Contribution to journalArticle

Open Access
Photosynthesis
Ozone
genetic variation
photosynthesis
Pollution

Water Use Efficiency as a Constraint and Target for Improving the Resilience and Productivity of C 3 and C 4 Crops

Leakey, A., Ferguson, J. N., Pignon, C. P., Wu, A., Jin, Z., Hammer, G. L. & Lobell, D. B., Apr 2019, In : Annual Review of Plant Biology. 70, p. 781-808 28 p.

Research output: Contribution to journalReview article

water use efficiency
Water
crops
Photosynthesis
photosynthesis

Winter hardiness of Miscanthus (III): Genome-wide association and genomic prediction for overwintering ability in Miscanthus sinensis

Dong, H., Clark, L. V., Lipka, A. E., Brummer, J. E., Głowacka, K., Hall, M. C., Heo, K., Jin, X., Peng, J., Yamada, T., Ghimire, B. K., Yoo, J. H., Yu, C. Y., Zhao, H., Long, S. P. & Sacks, E. J., Aug 2019, In : GCB Bioenergy. 11, 8, p. 930-955 26 p.

Research output: Contribution to journalArticle

Open Access
Miscanthus sinensis
winter hardiness
Miscanthus
overwintering
genomics