Research Output

2017

The pomegranate (Punica granatum L.) genome and the genomics of punicalagin biosynthesis

Qin, G., Xu, C., Ming, R., Tang, H., Guyot, R., Kramer, E. M., Hu, Y., Yi, X., Qi, Y., Xu, X., Gao, Z., Pan, H., Jian, J., Tian, Y., Yue, Z. & Xu, Y., Sep 2017, In : Plant Journal. 91, 6, p. 1108-1128 21 p.

Research output: Contribution to journalArticle

The primacy of multidecadal to centennial variability over late-Holocene forced change of the Asian Monsoon on the southern Tibetan Plateau

Conroy, J. L., Hudson, A. M., Overpeck, J. T., Liu, K. B., Wang, L. & Cole, J. E., Jan 15 2017, In : Earth and Planetary Science Letters. 458, p. 337-348 12 p.

Research output: Contribution to journalArticle

The social inefficiency of regulating indirect land use change due to biofuels

Khanna, M., Wang, W., Hudiburg, T. W. & Delucia, E. H., Jun 26 2017, In : Nature communications. 8, 15513.

Research output: Contribution to journalArticle

Time dependent genetic analysis links field and controlled environment phenotypes in the model C4grass Setaria

Feldman, M. J., Paul, R. E., Banan, D., Barrett, J. F., Sebastian, J., Yee, M. C., Jiang, H., Lipka, A. E., Brutnell, T. P., Dinneny, J. R., Leakey, A. D. B. & Baxter, I., Jan 1 2017, In : PLoS genetics. 13, 6, e1006841.

Research output: Contribution to journalArticle

Transcriptome dynamics of Camellia sinensis in response to continuous salinity and drought stress

Zhang, Q., Cai, M., Yu, X., Wang, L., Guo, C., Ming, R. & Zhang, J., Aug 1 2017, In : Tree Genetics and Genomes. 13, 4, 78.

Research output: Contribution to journalArticle

Trees harness the power of microbes to survive climate change

Lau, J. A., Lennon, J. T. & Heath, K. D., Oct 17 2017, In : Proceedings of the National Academy of Sciences of the United States of America. 114, 42, p. 11009-11011 3 p.

Research output: Contribution to journalComment/debate

Tropical Pacific climate variability over the last 6000 years as recorded in Bainbridge Crater Lake, Galápagos

Thompson, D. M., Conroy, J. L., Collins, A., Hlohowskyj, S. R., Overpeck, J. T., Riedinger-Whitmore, M., Cole, J. E., Bush, M. B., Whitney, H., Corley, T. L. & Kannan, M. S., Aug 2017, In : Paleoceanography. 32, 8, p. 903-922 20 p.

Research output: Contribution to journalArticle

Tyrosine-610 in the receptor kinase BAK1 does not play a major role in brassinosteroid signaling or innate immunity

Singh, V., Perraki, A., Kim, S. Y., Shrivastava, S., Lee, J. H., Zhao, Y., Schwessinger, B., Oh, M. H., Marshall-Colon, A., Zipfel, C. & Huber, S. C., Aug 2 2017, In : Frontiers in Plant Science. 8, 1273.

Research output: Contribution to journalArticle

Uncertainty in measurements of the photorespiratory CO2 compensation point and its impact on models of leaf photosynthesis

Walker, B. J., Orr, D. J., Carmo-Silva, E., Parry, M. A. J., Bernacchi, C. J. & Ort, D. R., Jun 1 2017, In : Photosynthesis research. 132, 3, p. 245-255 11 p.

Research output: Contribution to journalArticle

Understanding and improving global crop response to ozone pollution

Ainsworth, E. A., Jun 2017, In : Plant Journal. 90, 5, p. 886-897 12 p.

Research output: Contribution to journalArticle

Wind dispersal is predicted by tree, not diaspore, traits in comparisons of Neotropical species

Augspurger, C. K., Franson, S. E. & Cushman, K. C., Apr 1 2017, In : Functional Ecology. 31, 4, p. 808-820 13 p.

Research output: Contribution to journalArticle

Yakety Yak

Berenbaum, M. R., Dec 1 2017, In : American Entomologist. 63, 4, p. 205-207 3 p.

Research output: Contribution to journalComment/debate

2016

A consuming passion for entomophagy

Berenbaum, M. R., Jan 1 2016, In : American Entomologist. 62, 3, p. 140-142 3 p.

Research output: Contribution to journalComment/debate

Alteration of forest succession and carbon cycling under elevated CO2

Miller, A. D., Dietze, M. C., Delucia, E. H. & Anderson-Teixeira, K. J., Jan 1 2016, In : Global change biology. 22, 1, p. 351-363 13 p.

Research output: Contribution to journalArticle

Analysis of Alternative Splicing Landscape in Pineapple (Ananas comosus)

Wai, C. M., Powell, B., Ming, R. & Min, X. J., Sep 1 2016, In : Tropical Plant Biology. 9, 3, p. 150-160 11 p.

Research output: Contribution to journalArticle

Analysis of the mitochondrial genome in Hypomyces aurantius reveals a novel twintron complex in fungi

Deng, Y., Zhang, Q., Ming, R., Lin, L., Lin, X., Lin, Y., Li, X., Xie, B. & Wen, Z., Jul 2016, In : International journal of molecular sciences. 17, 7, 1049.

Research output: Contribution to journalArticle

An ectomycorrhizal nitrogen economy facilitates monodominance in a neotropical forest

Corrales, A., Mangan, S. A., Turner, B. L. & Dalling, J. W., Apr 1 2016, In : Ecology Letters. 19, 4, p. 383-392 10 p.

Research output: Contribution to journalLetter

An evaluation of new and established methods to determine T-DNA copy number and homozygosity in transgenic plants

Głowacka, K., Kromdijk, J., Leonelli, L., Niyogi, K. K., Clemente, T. E. & Long, S. P., Apr 1 2016, In : Plant Cell and Environment. 39, 4, p. 908-917 10 p.

Research output: Contribution to journalArticle

An improved approach for measuring the impact of multiple CO2 conductances on the apparent photorespiratory CO2 compensation point through slope-intercept regression

Walker, B. J., Skabelund, D. C., Busch, F. A. & Ort, D. R., Jun 1 2016, In : Plant Cell and Environment. 39, 6, p. 1198-1203 6 p.

Research output: Contribution to journalArticle

A taxonomic study of the genus Hellenocarum H. Wolff (Umbelliferae-apioideae) based on morphology, fruit anatomy, and molecular data

Zakharova, E. A., Kljuykov, E. V., Degtjareva, G. V., Samigullin, T. H., Ukrainskaya, U. A. & Downie, S. R., Jan 1 2016, In : Turkish Journal of Botany. 40, 2, p. 176-193 18 p.

Research output: Contribution to journalArticle

Balancing selection contributed to domestication of autopolyploid sugarcane (Saccharum officinarum L.)

Arro, J., Park, J. W., Wai, C. M., VanBuren, R., Pan, Y. B., Nagai, C., da Silva, J. & Ming, R. R., May 1 2016, In : Euphytica. 209, 2, p. 477-493 17 p.

Research output: Contribution to journalArticle

Biomass feedstock preprocessing and long-distance transportation logistics

Lin, T., Rodríguez, L. F., Davis, S., Khanna, M., Shastri, Y., Grift, T., Long, S. & Ting, K. C., Jan 1 2016, In : GCB Bioenergy. 8, 1, p. 160-170 11 p.

Research output: Contribution to journalArticle

Biomass offsets little or none of permafrost carbon release from soils, streams, and wildfire: An expert assessment

Abbott, B. W., Jones, J. B., Schuur, E. A. G., Chapin, F. S., Bowden, W. B., Bret-Harte, M. S., Epstein, H. E., Flannigan, M. D., Harms, T. K., Hollingsworth, T. N., Mack, M. C., McGuire, A. D., Natali, S. M., Rocha, A. V., Tank, S. E., Turetsky, M. R., Vonk, J. E., Wickland, K. P., Aiken, G. R., Alexander, H. D. & 80 others, Amon, R. M. W., Benscoter, B. W., Bergeron, Y., Bishop, K., Blarquez, O., Bond-Lamberty, B., Breen, A. L., Buffam, I., Cai, Y., Carcaillet, C., Carey, S. K., Chen, J. M., Chen, H. Y. H., Christensen, T. R., Cooper, L. W., Cornelissen, J. H. C., De Groot, W. J., Deluca, T. H., Dorrepaal, E., Fetcher, N., Finlay, J. C., Forbes, B. C., French, N. H. F., Gauthier, S., Girardin, M. P., Goetz, S. J., Goldammer, J. G., Gough, L., Grogan, P., Guo, L., Higuera, P. E., Hinzman, L., Hu, F. S., Hugelius, G., Jafarov, E. E., Jandt, R., Johnstone, J. F., Karlsson, J., Kasischke, E. S., Kattner, G., Kelly, R., Keuper, F., Kling, G. W., Kortelainen, P., Kouki, J., Kuhry, P., Laudon, H., Laurion, I., MacDonald, R. W., Mann, P. J., Martikainen, P. J., McClelland, J. W., Molau, U., Oberbauer, S. F., Olefeldt, D., Paré, D., Parisien, M. A., Payette, S., Peng, C., Pokrovsky, O. S., Rastetter, E. B., Raymond, P. A., Raynolds, M. K., Rein, G., Reynolds, J. F., Robards, M., Rogers, B. M., Schdel, C., Schaefer, K., Schmidt, I. K., Shvidenko, A., Sky, J., Spencer, R. G. M., Starr, G., Striegl, R. G., Teisserenc, R., Tranvik, L. J., Virtanen, T., Welker, J. M. & Zimov, S., Mar 7 2016, In : Environmental Research Letters. 11, 3, 034014.

Research output: Contribution to journalArticle

Can chilling tolerance of C4 photosynthesis in Miscanthus be transferred to sugarcane?

Glowacka, K., Ahmed, A., Sharma, S., Abbott, T., Comstock, J. C., Long, S. P. & Sacks, E. J., Mar 1 2016, In : GCB Bioenergy. 8, 2, p. 407-418 12 p.

Research output: Contribution to journalArticle

Candidate perennial bioenergy grasses have a higher albedo than annual row crops

Miller, J. N., VanLoocke, A., Gomez-Casanovas, N. & Bernacchi, C. J., Jul 1 2016, In : GCB Bioenergy. 8, 4, p. 818-825 8 p.

Research output: Contribution to journalArticle

Canopy position has a profound effect on soybean seed composition

Huber, S. C., Li, K., Nelson, R., Ulanov, A., DeMuro, C. M. & Baxter, I., Jan 1 2016, In : PeerJ. 2016, 9, e2452.

Research output: Contribution to journalArticle

Carbon Flux and Carbohydrate Gene Families in Pineapple

Paull, R. E., Chen, N. J., Ming, R. R., Wai, C. M., Shirley, N., Schwerdt, J. & Bulone, V., Sep 1 2016, In : Tropical Plant Biology. 9, 3, p. 200-213 14 p.

Research output: Contribution to journalArticle

Carbon isotope analyses reveal relatively high abundance of C4 grasses during early-middle Miocene in southwestern Europe

Urban, M. A., Nelson, D. M., Jiménez-Moreno, G. & Hu, F. S., Feb 1 2016, In : Palaeogeography, Palaeoclimatology, Palaeoecology. 443, p. 10-17 8 p.

Research output: Contribution to journalArticle

Chance the wrapper

Berenbaum, M. R., Dec 1 2016, In : American Entomologist. 62, 4, p. 203-205 3 p.

Research output: Contribution to journalComment/debate

Climate modifies response of non-native and native species richness to nutrient enrichment

Flores-Moreno, H., Reich, P. B., Lind, E. M., Sullivan, L. L., Seabloom, E. W., Yahdjian, L., MacDougall, A. S., Reichmann, L. G., Alberti, J., Báez, S., Bakker, J. D., Cadotte, M. W., Caldeira, M. C., Chaneton, E. J., D’Antonio, C. M., Fay, P. A., Firn, J., Hagenah, N., Harpole, W. S., Iribarne, O. & 9 others, Kirkman, K. P., Knops, J. M. H., La Pierre, K. J., Laungani, R., Leakey, A. D. B., McCulley, R. L., Moore, J. L., Pascual, J. & Borer, E. T., May 19 2016, In : Philosophical Transactions of the Royal Society B: Biological Sciences. 371, 1694, 20150273.

Research output: Contribution to journalArticle

Colin A. Wraight, 1945–2014

Govindjee, Prince, R. C. & Ort, D. R., Feb 1 2016, In : Photosynthesis research. 127, 2

Research output: Contribution to journalArticle

Comparative Analysis of GC Content Variations in Plant Genomes

Singh, R., Ming, R. & Yu, Q., Sep 1 2016, In : Tropical Plant Biology. 9, 3, p. 136-149 14 p.

Research output: Contribution to journalArticle

Comparative structural analysis of Bru1 region homeologs in Saccharum spontaneum and S. officinarum

Zhang, J., Sharma, A., Yu, Q., Wang, J., Li, L., Zhu, L., Zhang, X., Chen, Y. & Ming, R., Jun 10 2016, In : BMC genomics. 17, 1, 446.

Research output: Contribution to journalArticle

Comparing predicted yield and yield stability of willow and Miscanthus across Denmark

Larsen, S., Jaiswal, D., Bentsen, N. S., Wang, D. & Long, S. P., Nov 1 2016, In : GCB Bioenergy. 8, 6, p. 1061-1070 10 p.

Research output: Contribution to journalArticle

Comparing process-based and constraint-based approaches for modeling macroecological patterns

Xiao, X., O'Dwyer, J. P. & White, E. P., May 1 2016, In : Ecology. 97, 5, p. 1228-1238 11 p.

Research output: Contribution to journalArticle

Decoupled genomic elements and the evolution of partner quality in nitrogen-fixing rhizobia

Gordon, B. R., Klinger, C. R., Weese, D. J., Lau, J. A., Burke, P. V., Dentinger, B. T. M. & Heath, K. D., Mar 1 2016, In : Ecology and Evolution. 6, 5, p. 1317-1327 11 p.

Research output: Contribution to journalArticle

Depressaria depressana (fabricius) (depressariidae), new to the Midwestern USA

Harrison, T., Dean, C. A. E., Parks, K. & Berenbaum, M. R., Jun 1 2016, In : Journal of the Lepidopterists' Society. 70, 2, p. 169-173 5 p.

Research output: Contribution to journalArticle

Dioecy does not consistently accelerate or slow lineage diversification across multiple genera of angiosperms

Sabath, N., Goldberg, E. E., Glick, L., Einhorn, M., Ashman, T. L., Ming, R., Otto, S. P., Vamosi, J. C. & Mayrose, I., Feb 1 2016, In : New Phytologist. 209, 3, p. 1290-1300 11 p.

Research output: Contribution to journalArticle

Ecological genomics of mutualism decline in nitrogen-fixing bacteria

Klinger, C. R., Lau, J. A. & Heath, K. D., Mar 9 2016, In : Proceedings of the Royal Society B: Biological Sciences. 283, 1826, 20152563.

Research output: Contribution to journalArticle

Evidence for arrested succession in a liana-infested Amazonian forest

Tymen, B., Réjou-Méchain, M., Dalling, J. W., Fauset, S., Feldpausch, T. R., Norden, N., Phillips, O. L., Turner, B. L., Viers, J. & Chave, J., Jan 1 2016, In : Journal of Ecology. 104, 1, p. 149-159 11 p.

Research output: Contribution to journalArticle

Extremely low nucleotide diversity in the X-linked region of papaya caused by a strong selective sweep

VanBuren, R., Wai, C. M., Zhang, J., Han, J., Arro, J., Lin, Z., Liao, Z., Yu, Q., Wang, M. L., Zee, F., Moore, R. C., Charlesworth, D. & Ming, R., Nov 28 2016, In : Genome biology. 17, 1, 230.

Research output: Contribution to journalArticle

Factors underlying genotypic differences in the induction of photosynthesis in soybean [Glycine max (L.) Merr.]

Soleh, M. A., Tanaka, Y., Nomoto, Y., Iwahashi, Y., Nakashima, K., Fukuda, Y., Long, S. P. & Shiraiwa, T., Mar 1 2016, In : Plant Cell and Environment. 39, 3, p. 685-693 9 p.

Research output: Contribution to journalArticle

Focus on ecophysiology

Ainsworth, E. A., Bernacchi, C. J. & Dohleman, F. G., Oct 2016, In : Plant physiology. 172, 2, p. 619-621 3 p.

Research output: Contribution to journalEditorial

GCB-Bioenergy reaches a new high in impact factor and goes open access

Kressman, R. & Long, S., Jan 1 2016, In : GCB Bioenergy. 8, 1, 1 p.

Research output: Contribution to journalEditorial