Research Output

2018

Tundra landform and vegetation productivity trend maps for the arctic coastal plain of Northern Alaska

Lara, M. J., Nitze, I., Grosse, G. & David McGuire, A., Apr 10 2018, In : Scientific Data. 5, 180058.

Research output: Contribution to journalArticle

Open Access

Using phylogenetic analysis to investigate Eukaryotic gene origin

Zhang, D., Kan, X., Huss, S. E., Jiang, L., Chen, L. Q. & Hu, Y., Aug 14 2018, In : Journal of Visualized Experiments. 2018, 138, e56684.

Research output: Contribution to journalArticle

Variable selection in omics data: A practical evaluation of small sample sizes

Kirpich, A., Ainsworth, E. A., Wedow, J. M., Newman, J. R. B., Michailidis, G. & McIntyre, L. M., Jun 2018, In : PloS one. 13, 6, e0197910.

Research output: Contribution to journalArticle

Whence Lotka-Volterra? Conservation laws and integrable systems in ecology

O’Dwyer, J. P., Dec 1 2018, In : Theoretical Ecology. 11, 4, p. 441-452 12 p.

Research output: Contribution to journalArticle

Wood decomposition in aquatic and terrestrial ecosystems in the tropics: Contrasting biotic and abiotic processes

Jones, J. M., Heath, K. D., Ferrer, A., Brown, S. P., Canam, T. & Dalling, J. W., Nov 18 2018, In : FEMS microbiology ecology. 95, 1, fiy223.

Research output: Contribution to journalArticle

2017

A comparative genome analysis of Cercospora sojina with other members of the pathogen genus Mycosphaerella on different plant hosts

Zeng, F., Lian, X., Zhang, G., Yu, X., Bradley, C. A. & Ming, R., Sep 2017, In : Genomics Data. 13, p. 54-63 10 p.

Research output: Contribution to journalArticle

Allosteric Control of a Plant Receptor Kinase through S-Glutathionylation

Moffett, A. S., Bender, K. W., Huber, S. C. & Shukla, D., Dec 5 2017, In : Biophysical journal. 113, 11, p. 2354-2363 10 p.

Research output: Contribution to journalArticle

A morphometric analysis of vegetation patterns in dryland ecosystems

Mander, L., Dekker, S. C., Li, M., Mio, W., Punyasena, S. & Lenton, T. M., Feb 15 2017, In : Royal Society Open Science. 4, 2, 60443.

Research output: Contribution to journalArticle

A realistic meteorological assessment of perennial biofuel crop deployment: a Southern Great Plains perspective

Wagner, M., Wang, M., Miguez-Macho, G., Miller, J., VanLoocke, A., Bagley, J. E., Bernacchi, C. J. & Georgescu, M., Jun 2017, In : GCB Bioenergy. 9, 6, p. 1024-1041 18 p.

Research output: Contribution to journalArticle

A roadmap for improving the representation of photosynthesis in Earth system models

Rogers, A., Medlyn, B. E., Dukes, J. S., Bonan, G., von Caemmerer, S., Dietze, M. C., Kattge, J., Leakey, A. D. B., Mercado, L. M., Niinemets, Ü., Prentice, I. C., Serbin, S. P., Sitch, S., Way, D. A. & Zaehle, S., Jan 1 2017, In : New Phytologist. 213, 1, p. 22-42 21 p.

Research output: Contribution to journalComment/debate

Assessing the potential to decrease the Gulf of Mexico hypoxic zone with Midwest US perennial cellulosic feedstock production

VanLoocke, A., Twine, T. E., Kucharik, C. J. & Bernacchi, C. J., May 1 2017, In : GCB Bioenergy. 9, 5, p. 858-875 18 p.

Research output: Contribution to journalArticle

Autophosphorylation-based calcium (Ca2+) sensitivity priming and Ca2+/calmodulin inhibition of Arabidopsis thaliana Ca2+-dependent protein kinase 28 (CPK28)

Bender, K. W., Blackburn, R. K., Monaghan, J., Derbyshire, P., Menke, F. L. H., Zipfel, C., Goshe, M. B., Zielinski, R. E. & Huber, S. C., Mar 10 2017, In : Journal of Biological Chemistry. 292, 10, p. 3988-4002 15 p.

Research output: Contribution to journalArticle

Behavioral responses of honey bees (Apis mellifera) to natural and synthetic xenobiotics in food

Liao, L. H., Wu, W. Y. & Berenbaum, M. R., Dec 1 2017, In : Scientific reports. 7, 1, 15924.

Research output: Contribution to journalArticle

Bile acid sodium symporter BASS6 can transport glycolate and is involved in photorespiratory metabolism in Arabidopsis thaliana

South, P. F., Walker, B. J., Cavanagh, A. P., Rolland, V., Badger, M. & Ort, D. R., Apr 2017, In : Plant Cell. 29, 4, p. 808-823 16 p.

Research output: Contribution to journalArticle

Brazilian sugarcane ethanol as an expandable green alternative to crude oil use

Jaiswal, D., De Souza, A. P., Larsen, S., Lebauer, D. S., Miguez, F. E., Sparovek, G., Bollero, G., Buckeridge, M. S. & Long, S. P., Nov 1 2017, In : Nature Climate Change. 7, 11, p. 788-792 5 p.

Research output: Contribution to journalArticle

Can editors save peer review from peer reviewers?

D’Andrea, R. & O’Dwyer, J. P., Oct 2017, In : PloS one. 12, 10, e0186111.

Research output: Contribution to journalArticle

Cell wall metabolism and hexose allocation contribute to biomass accumulation in high yielding extreme segregants of a Saccharum interspecific F2 population

Wai, C. M., Zhang, J., Jones, T. C., Nagai, C. & Ming, R., Oct 11 2017, In : BMC genomics. 18, 1, 773.

Research output: Contribution to journalArticle

Charcoal reflectance suggests heating duration and fuel moisture affected burn severity in four Alaskan tundra wildfires

Hudspith, V. A., Belcher, C. M., Barnes, J., Dash, C. B., Kelly, R. & Hu, F. S., Jan 1 2017, In : International Journal of Wildland Fire. 26, 4, p. 306-316 11 p.

Research output: Contribution to journalArticle

Climatic thresholds shape northern high-latitude fire regimes and imply vulnerability to future climate change

Young, A. M., Higuera, P. E., Duffy, P. A. & Hu, F. S., May 2017, In : Ecography. 40, 5, p. 606-617 12 p.

Research output: Contribution to journalArticle

Constraints of cold and shade on the phenology of spring ephemeral herb species

Augspurger, C. K. & Salk, C. F., Jan 1 2017, In : Journal of Ecology. 105, 1, p. 246-254 9 p.

Research output: Contribution to journalArticle

Contribution of above- and belowground bioenergy crop residues to soil carbon

Carvalho, J. L. N., Hudiburg, T. W., Franco, H. C. J. & DeLucia, E. H., Aug 2017, In : GCB Bioenergy. 9, 8, p. 1333-1343 11 p.

Research output: Contribution to journalArticle

Crops in silico: Generating virtual crops using an integrative and multi-scale modeling platform

Marshall-Colon, A., Long, S. P., Allen, D. K., Allen, G. D., Beard, D. A., Benes, B., Von Caemmerer, S., Christensen, A. J., Cox, D. J., Hart, J. C., Hirst, P. M., Kannan, K., Katz, D. S., Lynch, J. P., Millar, A. J., Panneerselvam, B., Price, N. D., Prusinkiewicz, P., Raila, D., Shekar, R. G. & 9 others, Shrivastava, S., Shukla, D., Srinivasan, V., Stitt, M., Turk, M. J., Voit, E. O., Wang, Y., Yin, X. & Zhu, X. G., May 15 2017, In : Frontiers in Plant Science. 8, 786.

Research output: Contribution to journalArticle

Cross-biome assessment of gross soil nitrogen cycling in California ecosystems

Yang, W. H., Ryals, R. A., Cusack, D. F. & Silver, W. L., Apr 1 2017, In : Soil Biology and Biochemistry. 107, p. 144-155 12 p.

Research output: Contribution to journalArticle

Cytochrome P450 diversification and hostplant utilization patterns in specialist and generalist moths: Birth, death and adaptation

Calla, B., Noble, K., Johnson, R. M., Walden, K. K. O., Schuler, M. A., Robertson, H. M. & Berenbaum, M. R., Nov 2017, In : Molecular ecology. 26, 21, p. 6021-6035 15 p.

Research output: Contribution to journalArticle

Decline in herb species diversity over two decades in a temperate deciduous forest in Illinois1

Augspurger, C. K. & Buck, S., Oct 1 2017, In : Journal of the Torrey Botanical Society. 144, 4, p. 392-405 14 p.

Research output: Contribution to journalArticle

Decreasing, not increasing, leaf area will raise crop yields under global atmospheric change

Srinivasan, V., Kumar, P. & Long, S. P., Apr 1 2017, In : Global change biology. 23, 4, p. 1626-1635 10 p.

Research output: Contribution to journalArticle

Development of a Three-Dimensional Ray-Tracing Model of Sugarcane Canopy Photosynthesis and Its Application in Assessing Impacts of Varied Row Spacing

Wang, Y., Song, Q., Jaiswal, D., P. de Souza, A., Long, S. P. & Zhu, X. G., Sep 1 2017, In : Bioenergy Research. 10, 3, p. 626-634 9 p.

Research output: Contribution to journalArticle

Development of male-specific markers and identification of sex reversal mutants in papaya

Liao, Z., Yu, Q. & Ming, R., Feb 1 2017, In : Euphytica. 213, 2, 53.

Research output: Contribution to journalArticle

Diurnal cycling transcription factors of pineapple revealed by genome-wide annotation and global transcriptomic analysis

Sharma, A., Wai, C. M., Ming, R. & Yu, Q., Sep 1 2017, In : Genome biology and evolution. 9, 9, p. 2170-2190 21 p.

Research output: Contribution to journalArticle

Diversity in stomatal function is integral to modelling plant carbon and water fluxes

Wolz, K. J., Wertin, T. M., Abordo, M., Wang, D. & Leakey, A., Sep 1 2017, In : Nature Ecology and Evolution. 1, 9, p. 1292-1298 7 p.

Research output: Contribution to journalArticle

Draft genome sequence of Cercospora sojina isolate S9, a fungus causing frogeye leaf spot (FLS) disease of soybean

Zeng, F., Wang, C., Zhang, G., Wei, J., Bradley, C. A. & Ming, R., Jun 1 2017, In : Genomics Data. 12, p. 79-80 2 p.

Research output: Contribution to journalArticle

Ecology: Contests between species aid biodiversity

O'Dwyer, J. P., Aug 10 2017, In : Nature. 548, 7666, p. 166-167 2 p.

Research output: Contribution to journalShort survey

Elevated CO2 and temperature increase soil C losses from a soybean–maize ecosystem

Black, C. K., Davis, S. C., Hudiburg, T. W., Bernacchi, C. J. & DeLucia, E. H., Jan 1 2017, In : Global change biology. 23, 1, p. 435-445 11 p.

Research output: Contribution to journalArticle

Elevated ozone reduces photosynthetic carbon gain by accelerating leaf senescence of inbred and hybrid maize in a genotype-specific manner

Yendrek, C. R., Erice, G., Montes, C. M., Tomaz, T., Sorgini, C. A., Brown, P. J., McIntyre, L. M., Leakey, A. D. B. & Ainsworth, E. A., Dec 2017, In : Plant Cell and Environment. 40, 12, p. 3088-3100 13 p.

Research output: Contribution to journalArticle

Enhanced evapotranspiration was observed during extreme drought from Miscanthus, opposite of other crops

Joo, E., Zeri, M., Hussain, M. Z., DeLucia, E. H. & Bernacchi, C. J., Aug 2017, In : GCB Bioenergy. 9, 8, p. 1306-1319 14 p.

Research output: Contribution to journalArticle

Enhancing soybean photosynthetic CO2 assimilation using a cyanobacterial membrane protein, ictB

Hay, W. T., Bihmidine, S., Mutlu, N., Hoang, K. L., Awada, T., Weeks, D. P., Clemente, T. E. & Long, S. P., May 1 2017, In : Journal of Plant Physiology. 212, p. 58-68 11 p.

Research output: Contribution to journalArticle

Evaluating the Classical Versus an Emerging Conceptual Model of Peatland Methane Dynamics

Yang, W. H., McNicol, G., Teh, Y. A., Estera-Molina, K., Wood, T. E. & Silver, W. L., Sep 2017, In : Global Biogeochemical Cycles. 31, 9, p. 1435-1453 19 p.

Research output: Contribution to journalArticle

Evaluation of DeNitrification DeComposition model for estimating ammonia fluxes from chemical fertilizer application

Balasubramanian, S., Nelson, A., Koloutsou-Vakakis, S., Lin, J., Rood, M. J., Myles, L. T. & Bernacchi, C., May 1 2017, In : Agricultural and Forest Meteorology. 237-238, p. 123-134 12 p.

Research output: Contribution to journalArticle

Evaluation of the quantity and composition of sugars and lipid in the juice and bagasse of lipid producing sugarcane

Huang, H., Moreau, R. A., Powell, M. J., Wang, Z., Kannan, B., Altpeter, F., Grennan, A. K., Long, S. P. & Singh, V., Apr 1 2017, In : Biocatalysis and Agricultural Biotechnology. 10, p. 148-155 8 p.

Research output: Contribution to journalArticle

Evolution and expression of the fructokinase gene family in Saccharum

Chen, Y., Zhang, Q., Hu, W., Zhang, X., Wang, L., Hua, X., Yu, Q., Ming, R. & Zhang, J., Feb 21 2017, In : BMC genomics. 18, 1, 197.

Research output: Contribution to journalArticle

Explosive issues

Berenbaum, M. R., Mar 1 2017, In : American Entomologist. 63, 1, p. 3-5 3 p.

Research output: Contribution to journalArticle

Expression of cyanobacterial FBP/SBPase in soybean prevents yield depression under future climate conditions

Köhler, I. H., Ruiz-Vera, U. M., VanLoocke, A., Thomey, M. L., Clemente, T., Long, S. P., Ort, D. R. & Bernacchi, C. J., Jan 1 2017, In : Journal of experimental botany. 68, 3, p. 715-726 12 p.

Research output: Contribution to journalArticle

Geographically structured genetic variation in the Medicago lupulina–Ensifer mutualism

Harrison, T. L., Wood, C. W., Heath, K. D. & Stinchcombe, J. R., Jul 2017, In : Evolution. 71, 7, p. 1787-1801 15 p.

Research output: Contribution to journalArticle

High-throughput phenotyping of maize leaf physiological and biochemical traits using hyperspectral reflectance

Yendrek, C. R., Tomaz, T., Montes, C. M., Cao, Y., Morse, A. M., Brown, P. J., McIntyre, L. M., Leakey, A. D. B. & Ainsworth, E. A., Jan 2017, In : Plant physiology. 173, 1, p. 614-626 13 p.

Research output: Contribution to journalArticle

Holocene climatic change in the Alaskan Arctic as inferred from oxygen-isotope and lake-sediment analyses at Wahoo Lake

Vachula, R. S., Chipman, M. L. & Hu, F. S., Nov 1 2017, In : Holocene. 27, 11, p. 1631-1644 14 p.

Research output: Contribution to journalArticle

Holocene tree line changes in the Canadian Cordillera are controlled by climate and topography

Schwörer, C., Gavin, D. G., Walker, I. R. & Hu, F. S., May 2017, In : Journal of Biogeography. 44, 5, p. 1148-1159 12 p.

Research output: Contribution to journalArticle

Identification and Characterization of microRNAs from Saccharum officinarum L by Deep Sequencing

Xue, A., Li, Z., Cai, M., Zhang, Q., Zhang, X., Ming, R. & Zhang, J., Sep 1 2017, In : Tropical Plant Biology. 10, 2-3, p. 134-150 17 p.

Research output: Contribution to journalArticle