Research Output

2014

Features of transcriptome in trioecious papaya revealed by a large-scale sequencing of ESTs and comparative analysis in higher plants

Zeng, F., Yu, Q., Hou, S., Moore, P. H., Alam, M. & Ming, R. R., Jan 1 2014, In : Plant OMICS. 7, 6, p. 450-460 11 p.

Research output: Contribution to journalArticle

Genetics and genomics of papaya

Ming, R. & Moore, P. H., Jan 1 2014, Springer New York. 438 p.

Research output: Book/Report/Conference proceedingBook

Genomic analyses of the CAM plant pineapple

Zhang, J., Liu, J. & Ming, R., Jul 2014, In : Journal of experimental botany. 65, 13, p. 3395-3404 10 p.

Research output: Contribution to journalReview article

Genomics of papaya sex chromosomes

VanBuren, R. & Ming, R., Jan 1 2014, Genetics and Genomics of Papaya. Springer New York, p. 309-326 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Genomics of sex determination

Zhang, J., Boualem, A., Bendahmane, A. & Ming, R., Apr 2014, In : Current opinion in plant biology. 18, 1, p. 110-116 7 p.

Research output: Contribution to journalReview article

Happy Anniversary, Journal of Chemical Ecology!

Berenbaum, M. R., Apr 1 2014, In : Journal of Chemical Ecology. 40, 4, 1 p.

Research output: Contribution to journalComment/debate

Herbivores and nutrients control grassland plant diversity via light limitation

Borer, E. T., Seabloom, E. W., Gruner, D. S., Harpole, W. S., Hillebrand, H., Lind, E. M., Adler, P. B., Alberti, J., Anderson, T. M., Bakker, J. D., Biederman, L., Blumenthal, D., Brown, C. S., Brudvig, L. A., Buckley, Y. M., Cadotte, M., Chu, C., Cleland, E. E., Crawley, M. J., Daleo, P. & 35 others, Damschen, E. I., Davies, K. F., Decrappeo, N. M., Du, G., Firn, J., Hautier, Y., Heckman, R. W., Hector, A., Hillerislambers, J., Iribarne, O., Klein, J. A., Knops, J. M. H., La Pierre, K. J., Leakey, A. D. B., Li, W., MacDougall, A. S., McCulley, R. L., Melbourne, B. A., Mitchell, C. E., Moore, J. L., Mortensen, B., O'Halloran, L. R., Orrock, J. L., Pascual, J., Prober, S. M., Pyke, D. A., Risch, A. C., Schuetz, M., Smith, M. D., Stevens, C. J., Sullivan, L. L., Williams, R. J., Wragg, P. D., Wright, J. P. & Yang, L. H., 2014, In : Nature. 508, 7497, p. 517-520 4 p.

Research output: Contribution to journalArticle

Hit-and-run transcriptional control by bZIP1 mediates rapid nutrient signaling in Arabidopsis

Para, A., Li, Y., Marshall-Coloń, A., Varala, K., Francoeur, N. J., Moran, T. M., Edwards, M. B., Hackley, C., Bargmann, B. O. R., Birnbaum, K. D., Richard McCombie, W., Krouk, G. & Coruzzi, G. M., Jul 15 2014, In : Proceedings of the National Academy of Sciences of the United States of America. 111, 28, p. 10371-10376 6 p.

Research output: Contribution to journalArticle

Host plant records of Antherina Suraka (Boisduval, 1833) (Saturniidae) in Madagascar

Randrianandrasana, M., Razafindraleva, H. A. & Berenbaum, M. R., Jun 2 2014, In : Journal of the Lepidopterists' Society. 68, 2, p. 130-140 11 p.

Research output: Contribution to journalArticle

Identification of species in the angiosperm family Apiaceae using DNA barcodes

Liu, J., Shi, L., Han, J., Li, G., Lu, H., Hou, J., Zhou, X., Meng, F. & Downie, S. R., Nov 1 2014, In : Molecular ecology resources. 14, 6, p. 1231-1238 8 p.

Research output: Contribution to journalArticle

Identifying the pollen of an extinct spruce species in the Late Quaternary sediments of the Tunica Hills region, south-eastern United States

Mander, L., Rodriguez, J., Mueller, P. G., Jackson, S. T. & Punyasena, S. W., Oct 1 2014, In : Journal of Quaternary Science. 29, 7, p. 711-721 11 p.

Research output: Contribution to journalArticle

Impact of reassociation with a coevolved herbivore on oviposition deterrence in a hostplant

Jogesh, T., Wong, J. C. H., Stanley, M. C. & Berenbaum, M. R., Sep 2014, In : Oecologia. 176, 1, p. 117-127 11 p.

Research output: Contribution to journalArticle

Impacts of rising tropospheric ozone on photosynthesis and metabolite levels on field grown soybean

Sun, J., Feng, Z. & Ort, D. R., Sep 2014, In : Plant Science. 226, p. 147-161 15 p.

Research output: Contribution to journalArticle

Increasing CO2 threatens human nutrition

Myers, S. S., Zanobetti, A., Kloog, I., Huybers, P., Leakey, A. D. B., Bloom, A. J., Carlisle, E., Dietterich, L. H., Fitzgerald, G., Hasegawa, T., Holbrook, N. M., Nelson, R. L., Ottman, M. J., Raboy, V., Sakai, H., Sartor, K. A., Schwartz, J., Seneweera, S., Tausz, M. & Usui, Y., Jan 1 2014, In : Nature. 510, 7503, p. 139-142 4 p.

Research output: Contribution to journalArticle

Insights into the Common Ancestor of Eudicots

Li, J., Tang, H., Bowers, J. E., Ming, R. & Paterson, A. H., 2014, Advances in Botanical Research. Academic Press Inc., p. 137-174 38 p. (Advances in Botanical Research; vol. 69).

Research output: Chapter in Book/Report/Conference proceedingChapter

Investment in seed physical defence is associated with species' light requirement for regeneration and seed persistence: Evidence from Macaranga species in Borneo

Tiansawat, P., Davis, A. S., Berhow, M. A., Zalamea, P. C. & Dalling, J. W., Jun 13 2014, In : PloS one. 9, 6, e99691.

Research output: Contribution to journalArticle

Late-Quaternary Environmental and Ecological History of the Arctic Foothills, Northern Alaska

Wyatt Oswald, W., Brubaker, L. B., Hu, F. S. & Kling, G. W., Mar 27 2014, Alaska's Changing Arctic: Ecological Consequences for Tundra, Streams, and Lakes. Oxford University Press

Research output: Chapter in Book/Report/Conference proceedingChapter

Life: The Science of Biology

Sadava, D. E., Hillis, D., Heller, H. C. & Berenbaum, M. R., 2014, 10 ed. Sunderland, MA: Macmillan.

Research output: Book/Report/Conference proceedingBook

Light to liquid fuel: Theoretical and realized energy conversion efficiency of plants using Crassulacean Acid Metabolism (CAM) in arid conditions

Davis, S. C., LeBauer, D. S. & Long, S. P., Jul 2014, In : Journal of experimental botany. 65, 13, p. 3471-3478 8 p.

Research output: Contribution to journalArticle

Limitson yields in the corn belt

Ort, D. R. & Long, S. P., Jan 1 2014, In : Science. 344, 6183, p. 484-485 2 p.

Research output: Contribution to journalShort survey

Looking forward through the past: Identification of 50 priority research questions in palaeoecology

Seddon, A. W. R., Mackay, A. W., Baker, A. G., Birks, H. J. B., Breman, E., Buck, C. E., Ellis, E. C., Froyd, C. A., Gill, J. L., Gillson, L., Johnson, E. A., Jones, V. J., Juggins, S., Macias-Fauria, M., Mills, K., Morris, J. L., Nogués-Bravo, D., Punyasena, S. W., Roland, T. P., Tanentzap, A. J. & 49 others, Willis, K. J., Aberhan, M., van Asperen, E. N., Austin, W. E. N., Battarbee, R. W., Bhagwat, S., Belanger, C. L., Bennett, K. D., Birks, H. H., Bronk Ramsey, C., Brooks, S. J., de Bruyn, M., Butler, P. G., Chambers, F. M., Clarke, S. J., Davies, A. L., Dearing, J. A., Ezard, T. H. G., Feurdean, A., Flower, R. J., Gell, P., Hausmann, S., Hogan, E. J., Hopkins, M. J., Jeffers, E. S., Korhola, A. A., Marchant, R., Kiefer, T., Lamentowicz, M., Larocque-Tobler, I., López-Merino, L., Liow, L. H., Mcgowan, S., Miller, J. H., Montoya, E., Morton, O., Nogué, S., Onoufriou, C., Boush, L. P., Rodriguez-Sanchez, F., Rose, N. L., Sayer, C. D., Shaw, H. E., Payne, R., Simpson, G., Sohar, K., Whitehouse, N. J., Williams, J. W. & Witkowski, A., Jan 2014, In : Journal of Ecology. 102, 1, p. 256-267 12 p.

Research output: Contribution to journalArticle

Molecular genetic mapping of papaya

Han, J. & Ming, R., Jan 1 2014, Genetics and Genomics of Papaya. Springer New York, p. 143-155 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Molecular phylogenetics of Pimpinella and allied genera (Apiaceae), with emphasis on Chinese native species, inferred from nrDNA ITS and cpDNA intron sequence data

Wang, Z. X., Downie, S. R., Tan, J. B., Liao, C. Y., Yu, Y. & He, X. J., Oct 1 2014, In : Nordic Journal of Botany. 32, 5, p. 642-657 16 p.

Research output: Contribution to journalArticle

Nitrogen Fertilization Does Significantly Increase Yields of Stands of Miscanthus × giganteus and Panicum virgatum in Multiyear Trials in Illinois

Arundale, R. A., Dohleman, F. G., Voigt, T. B. & Long, S. P., Mar 2014, In : Bioenergy Research. 7, 1, p. 408-416 9 p.

Research output: Contribution to journalArticle

Oligomerization, membrane association, and in vivo phosphorylation of sugarcane UDP-glucose pyrophosphorylase

Soares, J. S. M., Gentile, A., Scorsato, V., Lima, A. D. C., Kiyota, E., Dos Santos, M. L., Piattoni, C. V., Huber, S. C., Aparicio, R. & Menossi, M., Nov 28 2014, In : Journal of Biological Chemistry. 289, 48, p. 33364-33377 14 p.

Research output: Contribution to journalArticle

On theory in ecology

Marquet, P. A., Allen, A. P., Brown, J. H., Dunne, J. A., Enquist, B. J., Gillooly, J. F., Gowaty, P. A., Green, J. L., Harte, J., Hubbell, S. P., O'Dwyer, J., Okie, J. G., Ostling, A., Ritchie, M., Storch, D. & West, G. B., Aug 2014, In : BioScience. 64, 8, p. 701-710 10 p.

Research output: Contribution to journalReview article

On the taxonomic resolution of pollen and spore records of earth’s vegetation

Mander, L. & Punyasena, S. W., Oct 1 2014, In : International Journal of Plant Sciences. 175, 8, p. 931-945 15 p.

Research output: Contribution to journalArticle

Optimization of linkage mapping strategy and construction of a high-density American lotus linkage map

Zhang, Q., Li, L., VanBuren, R., Liu, Y., Yang, M., Xu, L., Bowers, J. E., Zhong, C., Han, Y., Li, S. & Ming, R., May 15 2014, In : BMC genomics. 15, 1, 372.

Research output: Contribution to journalArticle

Photosynthesis: The final frontier

Long, S. & Zhu, X. G., Nov 1 2014, Resource: Engineering and Technology for Sustainable World, 21, 6 1 p.

Research output: Contribution to specialist publicationArticle

Photosynthesis and the environment

Cousins, A. B., Johnson, M. & Leakey, A. D. B., Feb 1 2014, In : Photosynthesis research. 119, 1-2, p. 1-2 2 p.

Research output: Contribution to journalEditorial

Photosystem II-inhibitors play a limited role in sweet corn response to 4-hydroxyphenyl pyruvate dioxygenase-inhibiting herbicides

Choe, E., Williams, M. M., Boydston, R. A., Huber, J. L., Huber, S. C. & Pataky, J. K., 2014, In : Agronomy Journal. 106, 4, p. 1317-1323 7 p.

Research output: Contribution to journalArticle

Phylogenetic analysis reveals multiple cases of morphological parallelism and taxonomic polyphyly in lomatium (Apiaceae)

George, E. E., Mansfield, D. H., Smith, J. F., Hartman, R. L., Downie, S. R. & Hinchliff, C. E., May 2014, In : Systematic Botany. 39, 2, p. 662-675 14 p.

Research output: Contribution to journalArticle

Physical mapping of papaya sex chromosomes

Wang, J., Na, J. K. & Ming, R., Jan 1 2014, Genetics and Genomics of Papaya. Springer New York, p. 329-340 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Plants in changing environmental conditions of the anthropocene

Leakey, A. D. B., Jan 1 2014, Ecology and the Environment. Springer New York, p. 533-572 40 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Preface

Ming, R. & Moore, P. H., Jan 1 2014, Genetics and Genomics of Papaya. Springer New York, p. vii-viii

Research output: Chapter in Book/Report/Conference proceedingForeword/postscript

Presidential buzz

Berenbaum, M., Dec 1 2014, In : American Entomologist. 60, 4, p. 196-200 5 p.

Research output: Contribution to journalArticle

Productivity and carbon dioxide exchange of leguminous crops: Estimates from flux tower measurements

Gilmanov, T. G., Baker, J. M., Bernacchi, C. J., Billesbach, D. P., Burba, G. G., Castro, S., Chen, J., Eugster, W., Fischer, M. L., Gamon, J. A., Gebremedhin, M. T., Glenn, A. J., Griffis, T. J., Hatfield, J. L., Prueger, J. H., Heuer, M. W., Howard, D. M., Leclerc, M. Y., Loescher, H. W., Marloie, O. & 7 others, Meyers, T. P., Olioso, A., Phillips, R. L., Skinner, R. H., Suyker, A. E., Tenuta, M. & Wylie, B. K., Jan 1 2014, In : Agronomy Journal. 106, 2, p. 545-559 15 p.

Research output: Contribution to journalArticle

Reconstructing disturbances and their biogeochemical consequences over multiple timescales

McLauchlan, K. K., Higuera, P. E., Gavin, D. G., Perakis, S. S., Mack, M. C., Alexander, H., Battles, J., Biondi, F., Buma, B., Colombaroli, D., Enders, S. K., Engstrom, D. R., Hu, F. S., Marlon, J. R., Marshall, J., McGlone, M., Morris, J. L., Nave, L. E., Shuman, B., Smithwick, E. A. H. & 4 others, Urrego, D. H., Wardle, D. A., Williams, C. J. & Williams, J. J., 2014, In : BioScience. 64, 2, p. 105-116 12 p.

Research output: Contribution to journalReview article

Recurrent short-distance dispersal explains wide distributions of hydrophytic umbellifers (Apiaceae tribe Oenantheae)

Spalik, K., Banasiak, L., Feist, M. A. E. & Downie, S. R., Aug 2014, In : Journal of Biogeography. 41, 8, p. 1559-1571 13 p.

Research output: Contribution to journalArticle

Seedling performance trade-Offs influencing habitat filtering along a soil nutrient gradient in a tropical forest

Anderse, K. M., Turner, B. L. & Dalling, J. W., Dec 1 2014, In : Ecology. 95, 12, p. 3399-3413 15 p.

Research output: Contribution to journalArticle

Sequencing and assembly of the transgenic papaya genome

VanBuren, R. & Ming, R., Jan 1 2014, Genetics and Genomics of Papaya. Springer New York, p. 187-203 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Sex Determination: Why So Many Ways of Doing It?

Bachtrog, D., Mank, J. E., Peichel, C. L., Kirkpatrick, M., Otto, S. P., Ashman, T. L., Hahn, M. W., Kitano, J., Mayrose, I., Ming, R., Perrin, N., Ross, L., Valenzuela, N., Vamosi, J. C., Mank, J. E., Peichel, C. L., Ashman, T. L., Blackmon, H., Goldberg, E. E., Hahn, M. W. & 8 others, Kirkpatrick, M., Kitano, J., Mayrose, I., Ming, R., Pennell, M. W., Perrin, N., Valenzuela, N. & Vamosi, J. C., Jan 1 2014, In : PLoS biology. 12, 7, p. 1-13 13 p., e1001899.

Research output: Contribution to journalArticle

Sex determination in flowering plants: Papaya as a model system

Aryal, R. & Ming, R., Mar 1 2014, In : Plant Science. 217-218, p. 56-62 7 p.

Research output: Contribution to journalReview article

Sex specific expression and distribution of small RNAs in papaya

Aryal, R., Jagadeeswaran, G., Zheng, Y., Yu, Q., Sunkar, R. & Ming, R., Jan 13 2014, In : BMC genomics. 15, 1, 20.

Research output: Contribution to journalArticle

Simultaneous improvement in productivity, water use, and albedo through crop structural modification

Drewry, D. T., Kumar, P. & Long, S. P., Jun 2014, In : Global change biology. 20, 6, p. 1955-1967 13 p.

Research output: Contribution to journalArticle