Research Output

2015

An autophosphorylation site database for leucine-rich repeat receptor-like kinases in Arabidopsis thaliana

Mitra, S. K., Chen, R., Dhandaydham, M., Wang, X., Blackburn, R. K., Kota, U., Goshe, M. B., Schwartz, D., Huber, S. C. & Clouse, S. D., Jun 1 2015, In : Plant Journal. 82, 6, p. 1042-1060 19 p.

Research output: Contribution to journalArticle

A physiological and biophysical model of coppice willow (Salix spp.) production yields for the contiguous USA in current and future climate scenarios

Wang, D., Jaiswal, D., LeBauer, D. S., Wertin, T. M., Bollero, G. A., Leakey, A. & Long, S. P., Jan 1 2015, In : Plant, Cell and Environment. 38, 9, p. 1850-1865 16 p.

Research output: Contribution to journalArticle

Application of optical topometry to analysis of the plant epidermis

Haus, M. J., Kelsch, R. D. & Jacobs, T. W., Sep 2015, In : Plant physiology. 169, 2, p. 946-959 14 p.

Research output: Contribution to journalArticle

Arctic tundra fires: Natural variability and responses to climate change

Hu, F. S., Higuera, P. E., Duffy, P., Chipman, M. L., Rocha, A. V., Young, A. M., Kelly, R. & Dietze, M. C., Sep 1 2015, In : Frontiers in Ecology and the Environment. 13, 7, p. 369-377 9 p.

Research output: Contribution to journalReview article

A roadmap for research on crassulacean acid metabolism (CAM) to enhance sustainable food and bioenergy production in a hotter, drier world

Yang, X., Cushman, J. C., Borland, A. M., Edwards, E. J., Wullschleger, S. D., Tuskan, G. A., Owen, N. A., Griffiths, H., Smith, J. A. C., De Paoli, H. C., Weston, D. J., Cottingham, R., Hartwell, J., Davis, S. C., Silvera, K., Ming, R., Schlauch, K., Abraham, P., Stewart, J. R., Guo, H. B. & 31 others, Albion, R., Ha, J., Lim, S. D., Wone, B. W. M., Yim, W. C., Garcia, T., Mayer, J. A., Petereit, J., Nair, S. S., Casey, E., Hettich, R. L., Ceusters, J., Ranjan, P., Palla, K. J., Yin, H., Reyes-García, C., Andrade, J. L., Freschi, L., Beltrán, J. D., Dever, L. V., Boxall, S. F., Waller, J., Davies, J., Bupphada, P., Kadu, N., Winter, K., Sage, R. F., Aguilar, C. N., Schmutz, J., Jenkins, J. & Holtum, J. A. M., Aug 1 2015, In : New Phytologist. 207, 3, p. 491-504 14 p.

Research output: Contribution to journalComment/debate

Assembling allopolyploid genomes: No longer formidable

Ming, R. & Man Wai, C., Jan 31 2015, In : Genome biology. 16, 1, 27.

Research output: Contribution to journalArticle

AtNIGT1/HRS1 integrates nitrate and phosphate signals at the Arabidopsis root tip

Medici, A., Marshall-Colon, A., Ronzier, E., Szponarski, W., Wang, R., Gojon, A., Crawford, N. M., Ruffel, S., Coruzzi, G. M. & Krouk, G., Feb 27 2015, In : Nature communications. 6, 6274.

Research output: Contribution to journalArticle

Backbones of evolutionary history test biodiversity theory for microbes

O'Dwyer, J. P., Kembel, S. W., Sharpton, T. J. & Pacala, S. W., Jul 7 2015, In : Proceedings of the National Academy of Sciences of the United States of America. 112, 27, p. 8356-8361 6 p.

Research output: Contribution to journalArticle

Bees in bonnets (and purses)

Berenbaum, M., Jun 1 2015, In : American Entomologist. 61, 2, p. 69-71 3 p.

Research output: Contribution to journalArticle

Bioenergy crop greenhouse gas mitigation potential under a range of management practices

Hudiburg, T. W., Davis, S. C., Parton, W. & Delucia, E. H., Mar 1 2015, In : GCB Bioenergy. 7, 2, p. 366-374 9 p.

Research output: Contribution to journalArticle

Biogeochemical consequences of regional land use change to a biofuel crop in the southeastern United States

Duval, B. D., Hartman, M., Marx, E., Parton, W. J., Long, S. P. & DeLucia, E. H., Dec 1 2015, In : Ecosphere. 6, 12, 265.

Research output: Contribution to journalArticle

Biophysical impacts of climate-smart agriculture in the Midwest United States

Bagley, J. E., Miller, J. & Bernacchi, C. J., Sep 1 2015, In : Plant, Cell and Environment. 38, 9, p. 1913-1930 18 p.

Research output: Contribution to journalReview article

Canopy warming caused photosynthetic acclimation and reduced seed yield in maize grown at ambient and elevated [CO2]

Ruiz-Vera, U. M., Siebers, M. H., Drag, D. W., Ort, D. R. & Bernacchi, C. J., Nov 2015, In : Global change biology. 21, 11, p. 4237-4249 13 p.

Research output: Contribution to journalArticle

Can the exceptional chilling tolerance of C4 photosynthesis found in Miscanthus ;× giganteus be exceeded? Screening of a novel Miscanthus Japanese germplasm collection

Głowacka, K., Jørgensen, U., Kjeldsen, J. B., Kørup, K., Spitz, I., Sacks, E. J. & Long, S. P., May 1 2015, In : Annals of botany. 115, 6, p. 981-990 10 p.

Research output: Contribution to journalArticle

Changing the spatial pattern of TFL1 expression reveals its key role in the shoot meristem in controlling Arabidopsis flowering architecture

Baumann, K., Venail, J., Berbel, A., Domenech, M. J., Money, T., Conti, L., Hanzawa, Y., Madueno, F. & Bradley, D., Aug 1 2015, In : Journal of experimental botany. 66, 15, p. 4769-4780 12 p.

Research output: Contribution to journalArticle

Characterization of quinone outside inhibitor fungicide resistance in Cercospora sojina and development of diagnostic tools for its identification

Zeng, F., Arnao, E., Zhang, G., Olaya, G., Wullschleger, J., Sierotzki, H., Ming, R., Bluhm, B. H., Bond, J. P., Fakhoury, A. M. & Bradley, C. A., 2015, In : Plant disease. 99, 4, p. 544-550 7 p.

Research output: Contribution to journalArticle

Charcoal reflectance reveals early Holocene boreal deciduous forests burned at high intensities

Hudspith, V. A., Belcher, C. M., Kelly, R. & Hu, F. S., Apr 8 2015, In : PloS one. 10, 4, e0120835.

Research output: Contribution to journalArticle

Cheaters must prosper: Reconciling theoretical and empirical perspectives on cheating in mutualism

Jones, E. I., Afkhami, M. E., Akçay, E., Bronstein, J. L., Bshary, R., Frederickson, M. E., Heath, K. D., Hoeksema, J. D., Ness, J. H., Pankey, M. S., Porter, S. S., Sachs, J. L., Scharnagl, K. & Friesen, M. L., Nov 2015, In : Ecology Letters. 18, 11, p. 1270-1284 15 p.

Research output: Contribution to journalReview article

Contribution of clinically derived mutations in ERG11 to azole resistance in Candida albicans

Flowers, S. A., Colón, B., Whaley, S. G., Schuler, M. A. & David Rogers, P., Jan 1 2015, In : Antimicrobial Agents and Chemotherapy. 59, 1, p. 450-460 11 p.

Research output: Contribution to journalArticle

Cost of abating greenhouse gas emissions with cellulosic ethanol

Dwivedi, P., Wang, W., Hudiburg, T., Jaiswal, D., Parton, W., Long, S., Delucia, E. & Khanna, M., Feb 17 2015, In : Environmental Science and Technology. 49, 4, p. 2512-2522 11 p.

Research output: Contribution to journalArticle

De novo transcriptome sequence and identification of major bast-related genes involved in cellulose biosynthesis in jute (Corchorus capsularis L.)

Zhang, L., Ming, R., Zhang, J., Tao, A., Fang, P. & Qi, J., Dec 15 2015, In : BMC genomics. 16, 1, 1062.

Research output: Contribution to journalArticle

Do soil microbes and abrasion by soil particles influence persistence and loss of physical dormancy in seeds of tropical Pioneers?

Zalamea, P. C., Sarmiento, C., Elizabeth Arnold, A., Davis, A. S. & Dalling, J. W., Jan 13 2015, In : Frontiers in Plant Science. 5, JAN, 799.

Research output: Contribution to journalArticle

Edible Non-crustacean Arthropods in Rural Communities of Madagascar

Randrianandrasana, M. & Berenbaum, M. R., Jul 1 2015, In : Journal of Ethnobiology. 35, 2, p. 354-383 30 p.

Research output: Contribution to journalArticle

Effect of Piperonyl Butoxide on the Toxicity of Four Classes of Insecticides to Navel Orangeworm (Amyelois transitella) (Lepidoptera: Pyralidae)

Demkovich, M., Dana, C. E., Siegel, J. P. & Berenbaum, M. R., Dec 1 2015, In : Journal of economic entomology. 108, 6, p. 2753-2760 8 p.

Research output: Contribution to journalArticle

Environment Has Little Effect on Biomass Biochemical Composition of Miscanthus × giganteus Across Soil Types, Nitrogen Fertilization, and Times of Harvest

Arundale, R. A., Bauer, S., Haffner, F. B., Mitchell, V. D., Voigt, T. B. & Long, S. P., Dec 1 2015, In : Bioenergy Research. 8, 4, p. 1636-1646 11 p.

Research output: Contribution to journalArticle

Functional analysis of the BRI1 receptor kinase by Thr-for-Ser substitution in a regulatory autophosphorylation site

Oh, M. H., Bender, K. W., Kim, S. Y., Wu, X., Lee, S., Nou, I. S., Zielinski, R. E., Clouse, S. D. & Huber, S. C., Jul 30 2015, In : Frontiers in Plant Science. 6, JULY, 562.

Research output: Contribution to journalArticle

Genetic diversity and structure of the noxious alien grass Praxelis clematidea in southern China

Wang, Q., Huang, M., Downie, S. R., Chen, Z. & Chen, Y., Apr 1 2015, In : Biochemical Systematics and Ecology. 59, p. 183-189 7 p.

Research output: Contribution to journalArticle

Glutaredoxin AtGRXC2 catalyses inhibitory glutathionylation of arabidopsis BRI1-associated receptor-like kinase 1 (BAK1) in vitro

Bender, K. W., Wang, X., Cheng, G. B., Kim, H. S., Zielinski, R. E. & Huber, S. C., May 1 2015, In : Biochemical Journal. 467, 3, p. 399-413 15 p.

Research output: Contribution to journalArticle

Greenness indices from digital cameras predict the timing and seasonal dynamics of canopy-scale photosynthesis

Toomey, M., Friedl, M. A., Frolking, S., Hufkens, K., Klosterman, S., Sonnentag, O., Baldocchi, D. D., Bernacchi, C. J., Biraud, S. C., Bohrer, G., Brzostek, E., Burns, S. P., Coursolle, C., Hollinger, D. Y., Margolis, H. A., McCaughey, H., Monson, R. K., Munger, J. W., Pallardy, S., Phillips, R. P. & 4 others, Torn, M. S., Wharton, S., Zeri, M. & Richardson, A. D., Jan 1 2015, In : Ecological Applications. 25, 1, p. 99-115 17 p.

Research output: Contribution to journalArticle

Heat waves imposed during early pod development in soybean (Glycine max) cause significant yield loss despite a rapid recovery from oxidative stress

Siebers, M. H., Yendrek, C. R., Drag, D., Locke, A. M., Rios Acosta, L., Leakey, A. D. B., Ainsworth, E. A., Bernacchi, C. J. & Ort, D. R., Aug 1 2015, In : Global change biology. 21, 8, p. 3114-3125 12 p.

Research output: Contribution to journalArticle

High potential for iron reduction in upland soils

Yang, W. H., Liptzin, D. & Yavitt, J. B., Jul 1 2015, In : Ecology. 96, 7, p. 2015-2020 6 p.

Research output: Contribution to journalArticle

Hit-and-Run leaves its mark: Catalyst transcription factors and chromatin modification

Varala, K., Li, Y., Marshall-Colón, A., Para, A. & Coruzzi, G. M., Aug 1 2015, In : BioEssays. 37, 8, p. 851-856 6 p.

Research output: Contribution to journalArticle

Identical substitutions in nagnesium chelatase paralogs result in chlorophyll-deficient soybean mutants

Campbell, B. W., Mani, D., Curtin, S. J., Slattery, R. A., Michno, J. M., Ort, D. R., Schaus, P. J., Palmer, R. G., Orf, J. H. & Stupar, R. M., 2015, In : G3: Genes, Genomes, Genetics. 5, 1, p. 123-131 9 p.

Research output: Contribution to journalArticle

Impacts of elevated atmospheric CO2 on nutrient content of important food crops

Dietterich, L. H., Zanobetti, A., Kloog, I., Huybers, P., Leakey, A. D. B., Bloom, A. J., Carlisle, E., Fernando, N., Fitzgerald, G., Hasegawa, T., Holbrook, N. M., Nelson, R. L., Norton, R., Ottman, M. J., Raboy, V., Sakai, H., Sartor, K. A., Schwartz, J., Seneweera, S., Usui, Y. & 2 others, Yoshinaga, S. & Myers, S. S., Jul 21 2015, In : Scientific Data. 2, 150036.

Research output: Contribution to journalArticle

Is there potential to adapt soybean (Glycine max Merr.) to future [CO2]? An analysis of the yield response of 18 genotypes in free-air CO2 enrichment

Bishop, K. A., Betzelberger, A. M., Long, S. P. & Ainsworth, E., Sep 1 2015, In : Plant, Cell and Environment. 38, 9, p. 1765-1774 10 p.

Research output: Contribution to journalArticle

Late-Holocene climate variability and ecosystem responses in Alaska inferred from high-resolution multiproxy sediment analyses at Grizzly Lake

Tinner, W., Beer, R., Bigler, C., Clegg, B. F., Jones, R. T., Kaltenrieder, P., van Raden, U. J., Gilli, A. & Hu, F. S., Oct 15 2015, In : Quaternary Science Reviews. 126, p. 41-56 16 p.

Research output: Contribution to journalArticle

Long-term nitrogen addition causes the evolution of less-cooperative mutualists

Weese, D. J., Heath, K. D., Dentinger, B. T. M. & Lau, J. A., Mar 1 2015, In : Evolution. 69, 3, p. 631-642 12 p.

Research output: Contribution to journalArticle

Mechanism of resistance acquisition and potential associated fitness costs in Amyelois transitella (Lepidoptera: Pyralidae) exposed to pyrethroid insecticides

Demkovich, M., Siegel, J. P., Higbee, B. S. & Berenbaum, M. R., Jun 1 2015, In : Environmental entomology. 44, 3, p. 855-863 9 p.

Research output: Contribution to journalArticle

Meeting the global food demand of the future by engineering crop photosynthesis and yield potential

Long, S. P., Marshall-Colon, A. & Zhu, X. G., Mar 26 2015, In : Cell. 161, 1, p. 56-66 11 p., 8102.

Research output: Contribution to journalReview article

Microbially mediated nitrogen retention and loss in a salt marsh soil http://www.esajournals.org/doi/pdf/10.1890/ES14-00179.1

Yang, W. H., Traut, B. H. & Silver, W. L., Jan 1 2015, In : Ecosphere. 6, 1, 7.

Research output: Contribution to journalArticle

Molecular phylogeography and ecological niche modelling of a widespread herbaceous climber, Tetrastigma hemsleyanum (Vitaceae): Insights into Plio-Pleistocene range dynamics of evergreen forest in subtropical China

Wang, Y. H., Jiang, W. M., Comes, H. P., Hu, F. S., Qiu, Y. X. & Fu, C. X., Apr 1 2015, In : New Phytologist. 206, 2, p. 852-867 16 p.

Research output: Contribution to journalArticle

Origin and domestication of papaya Yh chromosome

VanBuren, R., Zeng, F., Chen, C., Zhang, J., Wai, C. M., Han, J., Aryal, R., Gschwend, A. R., Wang, J., Na, J. K., Huang, L., Zhang, L., Miao, W., Gou, J., Arro, J., Guyot, R., Moore, R. C., Wang, M. L., Zee, F., Charlesworth, D. & 3 others, Moore, P. H., Yu, Q. & Ming, R., Apr 1 2015, In : Genome Research. 25, 4, p. 524-533 10 p.

Research output: Contribution to journalArticle

P450s in plants, insects, and their fungal pathogens

Schuler, M. A., Jan 1 2015, Cytochrome P450: Structure, Mechanism, and Biochemistry, Fourth Edition. Springer International Publishing, p. 409-449 41 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

PASTA: Ultra-large multiple sequence alignment for nucleotide and amino-acid sequences

Mirarab, S., Nguyen, N., Guo, S., Wang, L. S., Kim, J. & Warnow, T., May 1 2015, In : Journal of Computational Biology. 22, 5, p. 377-386 10 p.

Research output: Contribution to journalArticle

Patterns of Genetic Diversity in the Globally Invasive Species Wild Parsnip (Pastinaca sativa)

Jogesh, T., Peery, R., Downie, S. R. & Berenbaum, M. R., Oct 1 2015, In : Invasive Plant Science and Management. 8, 4, p. 415-429 15 p.

Research output: Contribution to journalArticle

Pharaoh's Dream Revisited: An Integrated US Midwest Field Research Network for Climate Adaptation

Gustafson, D., Hayes, M., Janssen, E., Lobell, D. B., Long, S., Nelson, G. C., Pakrasi, H. B., Raven, P., Robertson, G. P., Robertson, R. & Wuebbles, D., Dec 30 2015, In : BioScience. 66, 1, p. 80-85 6 p.

Research output: Contribution to journalArticle