Research Output 1975 2020

2019

Field-grown tobacco plants maintain robust growth while accumulating large quantities of a bacterial cellulase in chloroplasts

Schmidt, J. A., McGrath, J. M., Hanson, M. R., Long, S. P. & Ahner, B. A., Jul 1 2019, In : Nature Plants. 5, 7, p. 715-721 7 p.

Research output: Contribution to journalArticle

endo-1,4-beta-glucanase
tobacco
chloroplasts
recombinant proteins
proteins

Floral Organogenesis in Three Members of the Tribe Delphinieae (Ranunculaceae)

Chang, H., Downie, S. R., Peng, H. & Sun, F., Nov 11 2019, In : Plants. 8, 11, 493.

Research output: Contribution to journalArticle

Open Access
Consolida ajacis
Ranunculaceae
organogenesis
calyx
flower

Genetic strategies for improving crop yields

Bailey-Serres, J., Parker, J. E., Ainsworth, E. A., Oldroyd, G. E. D. & Schroeder, J. I., Nov 7 2019, In : Nature. 575, 7781, p. 109-118 10 p.

Research output: Contribution to journalReview article

Open Access
Infrared Rays
Weather
Agriculture
Climate
Population

Genome-Wide Analysis of Nitrate Transporter (NRT/NPF) Family in Sugarcane Saccharum spontaneum L.

Wang, J., Li, Y., Zhu, F., Ming, R. R. & Chen, L., Sep 1 2019, In : Tropical Plant Biology. 12, 3, p. 133-149 17 p.

Research output: Contribution to journalArticle

Saccharum spontaneum
Saccharum
sugarcane
transporters
nitrates

Genome-wide association and genomic prediction for biomass yield in a genetically diverse Miscanthus sinensis germplasm panel phenotyped at five locations in Asia and North America

Clark, L. V., Dwiyanti, M. S., Anzoua, K. G., Brummer, J. E., Ghimire, B. K., Głowacka, K., Hall, M., Heo, K., Jin, X., Lipka, A. E., Peng, J., Yamada, T., Yoo, J. H., Yu, C. Y., Zhao, H., Long, S. P. & Sacks, E. J., Aug 2019, In : GCB Bioenergy. 11, 8, p. 988-1007 20 p.

Research output: Contribution to journalArticle

Open Access
Miscanthus sinensis
germplasm
Nucleotides
Polymorphism
single nucleotide polymorphism

Genomic and Allelic Analyses of Laccase Genes in Sugarcane (Saccharum spontaneum L.)

Zhang, W., Lin, J., Dong, F., Ma, Q., Wu, S., Ma, X., Fatima, M., Jia, H. & Ming, R., Sep 1 2019, In : Tropical Plant Biology. 12, 3, p. 219-229 11 p.

Research output: Contribution to journalArticle

Saccharum spontaneum
Laccase
Saccharum
laccase
sugarcane
Ananas
Crassulacean acid metabolism
Aquaporins
Boron
aquaporins

Harnessing emerging technologies to reduce Gulf hypoxia

Khanna, M., Gramig, B. M., DeLucia, E. H., Cai, X. & Kumar, P., Oct 1 2019, In : Nature Sustainability. 2, 10, p. 889-891 3 p.

Research output: Contribution to journalComment/debate

hypoxia
Technology
gulf
Hypoxia

High-throughput field phenotyping using hyperspectral reflectance and partial least squares regression (PLSR) reveals genetic modifications to photosynthetic capacity

Meacham-Hensold, K., Montes, C. M., Wu, J., Guan, K., Fu, P., Ainsworth, E. A., Pederson, T., Moore, C. E., Brown, K. L., Raines, C. & Bernacchi, C. J., Sep 15 2019, In : Remote Sensing of Environment. 231, 111176.

Research output: Contribution to journalArticle

Open Access
genetic engineering
reflectance
least squares
Throughput
phenotype

Historical soil drainage mediates the response of soil greenhouse gas emissions to intense precipitation events

Krichels, A., Delucia, E. H., Sanford, R. A., Chee-Sanford, J. & Yang, W., Feb 15 2019, In : Biogeochemistry. 142, 3, p. 425-442 18 p.

Research output: Contribution to journalArticle

soil drainage
soil gas
Gas emissions
Greenhouse gases
Drainage

Honey Bees and Environmental Stress: Toxicologic Pathology of a Superorganism

Berenbaum, M. R. & Liao, L. H., Dec 1 2019, In : Toxicologic Pathology. 47, 8, p. 1076-1081 6 p.

Research output: Contribution to journalArticle

Honey
Bees
Pathology
Pesticides
Nurses
Open Access
artificial intelligence
reflectance
least squares
operator regions
leaves

Identification and Expression Analysis of TCP Genes in Saccharum spontaneum L

Lin, J., Zhu, M., Cai, M., Zhang, W., Fatima, M., Jia, H., Li, F. & Ming, R., Sep 1 2019, In : Tropical Plant Biology. 12, 3, p. 206-218 13 p.

Research output: Contribution to journalArticle

Saccharum spontaneum
Saccharum
sugarcane
Sorghum (Poaceae)
Genes

Impact factor impacts on early-career scientist careers

Berenbaum, M. R., Aug 20 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 34, p. 16659-16662 4 p.

Research output: Contribution to journalReview article

Open Access

Implementation of the effect of urease inhibitor on ammonia emissions following urea-based fertilizer application at a Zea mays field in central Illinois: A study with SURFATM-NH 3 model

Lichiheb, N., Myles, L. T., Personne, E., Heuer, M., Buban, M., Nelson, A. J., Koloutsou-Vakakis, S., Rood, M. J., Joo, E., Miller, J. & Bernacchi, C., May 15 2019, In : Agricultural and Forest Meteorology. 269-270, p. 78-87 10 p.

Research output: Contribution to journalArticle

urease inhibitors
fertilizer application
urea
inhibitor
ammonia

Increased temperatures may safeguard the nutritional quality of crops under future elevated CO2 concentrations

Köhler, I. H., Huber, S. C., Bernacchi, C. J. & Baxter, I. R., Mar 2019, In : Plant Journal. 97, 5, p. 872-886 15 p.

Research output: Contribution to journalArticle

Nutritive Value
nutritive value
carbon dioxide
Seeds
Temperature
Computer Simulation
Computing Methodologies
DNA Shuffling
Genome
Technology

Intra- and interspecific variation in trophic ecology of ‘predatory’ ants in the subfamily Ponerinae

Hanisch, P. E., Drager, K., Yang, W. H., Tubaro, P. L. & Suarez, A. V., Jan 1 2019, (Accepted/In press) In : Ecological Entomology.

Research output: Contribution to journalArticle

interspecific variation
intraspecific variation
ant
Formicidae
ecology

Invasive perennial forb effects on gross soil nitrogen cycling and nitrous oxide fluxes depend on phenology

Portier, E., Silver, W. L. & Yang, W. H., Jul 2019, In : Ecology. 100, 7, e02716.

Research output: Contribution to journalArticle

soil nitrogen
nitrous oxide
phenology
Lepidium latifolium
nitrogen

In vivo evidence for a regulatory role of phosphorylation of Arabidopsis Rubisco activase at the Thr78 site

Kim, S. Y., Harvey, C. M., Giese, J., Lassowskat, I., Singh, V., Cavanagh, A. P., Spalding, M. H., Finkemeier, I., Ort, D. R. & Huber, S. C., Sep 10 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 37, p. 18723-18731 9 p.

Research output: Contribution to journalArticle

Open Access
Ribulose-Bisphosphate Carboxylase
Tissue Plasminogen Activator
Threonine
Phosphorylation
Light

Iron Redox Reactions Can Drive Microtopographic Variation in Upland Soil Carbon Dioxide and Nitrous Oxide Emissions

Krichels, A. H., Sipic, E. & Yang, W. H., Aug 29 2019, In : Soil Systems. 3, 3, 60.

Research output: Contribution to journalArticle

Open Access
nitrous oxide
soil carbon
carbon dioxide
iron
soil

Karyotype variations among date palm (Phoenix dactylifera L.) cultivars of Sindh, Pakistan

Jatt, T., Markhand, G. S., Rayburn, L., Ming, R., Jatoi, M. A. & Mirbahar, A. A., Jan 1 2019, In : Sarhad Journal of Agriculture. 35, 3, p. 708-718 11 p.

Research output: Contribution to journalArticle

Open Access
Phoenix dactylifera
Pakistan
Karyotype
karyotyping
Chromosomes
oviposition deterrents
Oviposition
Edible Plants
plant fats and oils
Plant Oils

Large loss of CO2 in winter observed across the northern permafrost region

Natali, S. M., Watts, J. D., Rogers, B. M., Potter, S., Ludwig, S. M., Selbmann, A. K., Sullivan, P. F., Abbott, B. W., Arndt, K. A., Birch, L., Björkman, M. P., Bloom, A. A., Celis, G., Christensen, T. R., Christiansen, C. T., Commane, R., Cooper, E. J., Crill, P., Czimczik, C., Davydov, S. & 55 others, Du, J., Egan, J. E., Elberling, B., Euskirchen, E. S., Friborg, T., Genet, H., Göckede, M., Goodrich, J. P., Grogan, P., Helbig, M., Jafarov, E. E., Jastrow, J. D., Kalhori, A. A. M., Kim, Y., Kimball, J. S., Kutzbach, L., Lara, M. J., Larsen, K. S., Lee, B. Y., Liu, Z., Loranty, M. M., Lund, M., Lupascu, M., Madani, N., Malhotra, A., Matamala, R., McFarland, J., McGuire, A. D., Michelsen, A., Minions, C., Oechel, W. C., Olefeldt, D., Parmentier, F. J. W., Pirk, N., Poulter, B., Quinton, W., Rezanezhad, F., Risk, D., Sachs, T., Schaefer, K., Schmidt, N. M., Schuur, E. A. G., Semenchuk, P. R., Shaver, G., Sonnentag, O., Starr, G., Treat, C. C., Waldrop, M. P., Wang, Y., Welker, J., Wille, C., Xu, X., Zhang, Z., Zhuang, Q. & Zona, D., Nov 1 2019, In : Nature Climate Change. 9, 11, p. 852-857 6 p.

Research output: Contribution to journalLetter

permafrost
Arctic
winter
carbon
growing season

Laserocarpum, a new genus of Apiaceae endemic to Greece

Spalik, K., Wojewódzka, A., Constantinidis, T., Downie, S. R., Gierek, M. & Banasiak, Ł., Jan 1 2019, In : Acta Societatis Botanicorum Poloniae. 88, 3, 3635.

Research output: Contribution to journalArticle

Open Access
Portenschlagiella
Laserpitium
Apiaceae
Greece
new genus
Herbivory
chemical defense
Photosynthesis
Arabidopsis
herbivory

Metabolite and transcript profiling of Guinea grass (Panicum maximum Jacq) response to elevated [CO 2 ] and temperature

Wedow, J. M., Yendrek, C. R., Mello, T. R., Creste, S., Martinez, C. A. & Ainsworth, E. A., Apr 1 2019, In : Metabolomics. 15, 4, 51.

Research output: Contribution to journalArticle

Open Access
Guinea
Panicum
Carbon Monoxide
Metabolites
Poaceae

Microtopographic differences in soil properties and microbial community composition at the field scale

Suriyavirun, N., Krichels, A. H., Kent, A. D. & Yang, W. H., Apr 2019, In : Soil Biology and Biochemistry. 131, p. 71-80 10 p.

Research output: Contribution to journalArticle

community composition
microbial communities
microbial community
soil properties
soil property

Mitochondrial genome in Hypsizygus marmoreus and its evolution in Dikarya

Wang, G., Lin, J., Shi, Y., Chang, X., Wang, Y., Guo, L., Wang, W., Dou, M., Deng, Y., Ming, R. & Zhang, J., Oct 22 2019, In : BMC genomics. 20, 1, 765.

Research output: Contribution to journalArticle

Open Access
Mitochondrial Genome
Gene Order
Agaricales
Mitochondria
Tricholoma

Molecular Basis of the Glucose Transport Mechanism in Plants

Selvam, B., Yu, Y. C., Chen, L. Q. & Shukla, D., Jun 26 2019, In : ACS Central Science. 5, 6, p. 1085-1096 12 p.

Research output: Contribution to journalArticle

Open Access
Facings
Glucose
Sugars
Free energy
Molecular dynamics

Nanodiscs as a New Tool to Examine Lipid–Protein Interactions

Denisov, I. G., Schuler, M. A. & Sligar, S., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 645-671 27 p. (Methods in Molecular Biology; vol. 2003).

Research output: Chapter in Book/Report/Conference proceedingChapter

Lipids
Lipoproteins
Proteins
Membranes
Protein Transport

Nutrient Release From Permafrost Thaw Enhances CH4 Emissions From Arctic Tundra Wetlands

Lara, M. J., Lin, D. H., Andresen, C., Lougheed, V. L. & Tweedie, C. E., Jun 2019, In : Journal of Geophysical Research: Biogeosciences. 124, 6, p. 1560-1573 14 p.

Research output: Contribution to journalArticle

tundra
permafrost
wetlands
Permafrost
nutrients

Optimization of PCR primers to detect phylogenetically diverse nrfA genes associated with nitrite ammonification

Cannon, J., Sanford, R. A., Connor, L., Yang, W. & Chee-Sanford, J., May 2019, In : Journal of Microbiological Methods. 160, p. 49-59 11 p.

Research output: Contribution to journalArticle

Open Access
Nitrites
Polymerase Chain Reaction
nitrate reductase (cytochrome)
Ammonium Compounds
Nitrates

Out of Order

Berenbaum, M. R., Mar 12 2019, In : American Entomologist. 65, 1, p. 3-5 3 p.

Research output: Contribution to journalArticle

Papaya CpbHLH1/2 regulate carotenoid biosynthesis-related genes during papaya fruit ripening

Zhou, D., Shen, Y., Zhou, P., Fatima, M., Lin, J., Yue, J., Zhang, X., Chen, L. Y. & Ming, R., Dec 1 2019, In : Horticulture Research. 6, 1, 80.

Research output: Contribution to journalArticle

Open Access
Carica
Biosynthesis
papayas
Carotenoids
Fruits

Papaya sex chromosome evolution and domestication

Zerpa-Catanho, D. P. & Ming, R., Jan 1 2019, In : Acta Horticulturae. 1250, p. 129-137 9 p.

Research output: Contribution to journalArticle

sex chromosomes
papayas
domestication
Y chromosome
X chromosome

Partitioning the effects of deterministic and stochastic processes on species extinction risk

Fung, T., O'Dwyer, J. P. & Chisholm, R. A., Apr 2019, In : Ecological Complexity. 38, p. 156-167 12 p.

Research output: Contribution to journalArticle

extinction risk
stochastic processes
stochasticity
extinction
partitioning

Pathology in Ecological Research With Implications for One Health: Session Summary

Haschek, W. M., Berenbaum, M., Hinton, D. E., Cora, M., Chernoff, N., Travlos, G., Liu, C. W., Lu, K. & Law, M., Dec 1 2019, In : Toxicologic Pathology. 47, 8, p. 1072-1075 4 p.

Research output: Contribution to journalArticle

Pathology
Health
Bees
Research
Fishes

Performance of laser-based electronic devices for structural analysis of Amazonian terra-firme forests

Pereira, I. S., do Nascimento, H. E. M., Vicari, M. B., Disney, M., DeLucia, E. H., Domingues, T., Kruijt, B., Lapola, D., Meir, P., Norby, R. J., Ometto, J. P. H. B., Quesada, C. A., Rammig, A. & Hofhansl, F., Mar 1 2019, In : Remote Sensing. 11, 5, 510.

Research output: Contribution to journalArticle

Open Access
structural analysis
laser
aboveground biomass
biomass
vegetation

Perspective: Understanding the Intersection of Climate/Environmental Change, Health, Agriculture, and Improved Nutrition - A Case Study: Type 2 Diabetes

Finley, J., Jaacks, L. M., Peters, C. J., Ort, D. R., Aimone, A. M., Conrad, Z. & Raiten, D. J., Sep 1 2019, In : Advances in Nutrition. 10, 5, p. 731-738 8 p.

Research output: Contribution to journalReview article

Open Access
Environmental Health
Climate Change
Agriculture
noninsulin-dependent diabetes mellitus
Type 2 Diabetes Mellitus

Phenotyping photosynthesis on the limit - a critical examination of RACiR

Taylor, S. H. & Long, S. P., Jan 1 2019, In : The New phytologist. 221, 2, p. 621-624 4 p.

Research output: Contribution to journalLetter

Open Access
Ribulose-Bisphosphate Carboxylase
Photosynthesis
ribulose-bisphosphate carboxylase
global change
photosynthesis

Photosynthesis across African cassava germplasm is limited by Rubisco and mesophyll conductance at steady state, but by stomatal conductance in fluctuating light

De Souza, A. P., Wang, Y., Orr, D. J., Carmo-Silva, E. & Long, S. P., Jan 1 2019, (Accepted/In press) In : New Phytologist.

Research output: Contribution to journalArticle

Open Access
Ribulose-Bisphosphate Carboxylase
Manihot
Photosynthesis
ribulose-bisphosphate carboxylase
cassava

Plant Networks as Traits and Hypotheses: Moving Beyond Description

Marshall-Colon, A. & Kliebenstein, D. J., Sep 2019, In : Trends in Plant Science. 24, 9, p. 840-852 13 p.

Research output: Contribution to journalReview article

Biological Sciences
organisms
phenotype
gene interaction
linkage (genetics)

Population structure of Miscanthus sacchariflorus reveals two major polyploidization events, tetraploid-mediated unidirectional introgression from diploid M. sinensis, and diversity centred around the Yellow Sea

Clark, L. V., Jin, X., Petersen, K. K., Anzoua, K. G., Bagmet, L., Chebukin, P., Deuter, M., Dzyubenko, E., Dzyubenko, N., Heo, K., Johnson, D. A., Jørgensen, U., Kjeldsen, J. B., Nagano, H., Peng, J., Sabitov, A., Yamada, T., Yoo, J. H., Yu, C. Y., Long, S. P. & 1 others, Sacks, E. J., Oct 29 2019, In : Annals of botany. 124, 4, p. 731-748 18 p.

Research output: Contribution to journalArticle

Open Access
Miscanthus sacchariflorus
Miscanthus sinensis
Yellow Sea
introgression
tetraploidy

Predicting light-induced stomatal movements based on the redox state of plastoquinone: theory and validation

Kromdijk, J., Głowacka, K. & Long, S. P., Jul 1 2019, In : Photosynthesis research. 141, 1, p. 83-97 15 p.

Research output: Contribution to journalArticle

Plastoquinone
stomatal movement
Oxidation-Reduction
Light
stomatal conductance

Recent polyploidization events in three Saccharum founding species

Zhang, J., Zhang, Q., Li, L., Tang, H., Zhang, Q., Chen, Y., Arrow, J., Zhang, X., Wang, A., Miao, C. & Ming, R., Jan 2019, In : Plant Biotechnology Journal. 17, 1, p. 264-274 11 p.

Research output: Contribution to journalArticle

Saccharum
Genome
genome
Sorghum
linkage groups

Recent warming has resulted in smaller gains in net carbon uptake in northern high latitudes

Zhu, P., Zhuang, Q., Welp, L., Ciais, P., Heimann, M., Peng, B., Li, W., Bernacchi, C., Roedenbeck, C. & Keenan, T. F., Sep 1 2019, In : Journal of Climate. 32, 18, p. 5849-5863 15 p.

Research output: Contribution to journalArticle

warming
carbon
drawdown
carbon balance
temperature

Reply to: Brazilian ethanol expansion subject to limitations

Jaiswal, D., De Souza, A. P., Larsen, S., LeBauer, D. S., Miguez, F. E., Sparovek, G., Bollero, G. A., Buckeridge, M. S. & Long, S. P., Mar 1 2019, In : Nature Climate Change. 9, 3, p. 211-212 2 p.

Research output: Contribution to journalLetter

ethanol

Resilience of lake biogeochemistry to boreal-forest wildfires during the late Holocene

Chipman, M. L. & Hu, F. S., Aug 1 2019, In : Biology Letters. 15, 8, 20190390.

Research output: Contribution to journalArticle

biogeochemistry
Lakes
wildfires
boreal forests
lakes