Research Output

2017

Soilborne fungi have host affinity and host-specific effects on seed germination and survival in a lowland tropical forest

Sarmiento, C., Zalamea, P. C., Dalling, J. W., Davis, A. S., Simon, S. M., U'Ren, J. M. & Arnold, A. E., Oct 24 2017, In : Proceedings of the National Academy of Sciences of the United States of America. 114, 43, p. 11458-11463 6 p.

Research output: Contribution to journalArticle

Soil environmental factors drive seed density across vegetation types on the Tibetan Plateau

Ma, M., Dalling, J. W., Ma, Z. & Zhou, X., Oct 1 2017, In : Plant and Soil. 419, 1-2, p. 349-361 13 p.

Research output: Contribution to journalArticle

Soil particulate organic matter increases under perennial bioenergy crop agriculture

Kantola, I. B., Masters, M. D. & DeLucia, E. H., Oct 2017, In : Soil Biology and Biochemistry. 113, p. 184-191 8 p.

Research output: Contribution to journalArticle

Soils and rainfall drive landscape-scale changes in the diversity and functional composition of tree communities in premontane tropical forest

Prada, C. M., Morris, A., Andersen, K. M., Turner, B. L., Caballero, P. & Dalling, J. W., Jul 2017, In : Journal of Vegetation Science. 28, 4, p. 859-870 12 p.

Research output: Contribution to journalArticle

Spatiotemporal variability in the δ18O-salinity relationship of seawater across the tropical Pacific Ocean

Conroy, J. L., Thompson, D. M., Cobb, K. M., Noone, D., Rea, S. & Legrande, A. N., May 1 2017, In : Paleoceanography. 32, 5, p. 484-497 14 p.

Research output: Contribution to journalArticle

Species-abundance distributions under colored environmental noise

Fung, T., O’Dwyer, J. P. & Chisholm, R. A., Jan 1 2017, In : Journal of Mathematical Biology. 74, 1-2, p. 289-311 23 p.

Research output: Contribution to journalArticle

Species identity influences secondary removal of seeds of Neotropical pioneer tree species

Ruzi, S. A., Roche, D. P., Zalamea, P. C., Robison, A. C. & Dalling, J. W., Aug 1 2017, In : Plant Ecology. 218, 8, p. 983-995 13 p.

Research output: Contribution to journalArticle

TAL effector driven induction of a SWEET gene confers susceptibility to bacterial blight of cotton

Cox, K. L., Meng, F., Wilkins, K. E., Li, F., Wang, P., Booher, N. J., Carpenter, S. C. D., Chen, L. Q., Zheng, H., Gao, X., Zheng, Y., Fei, Z., Yu, J. Z., Isakeit, T., Wheeler, T., Frommer, W. B., He, P., Bogdanove, A. J. & Shan, L., May 24 2017, In : Nature communications. 8, 15588.

Research output: Contribution to journalArticle

Temporal and spatial transcriptomic and microRNA dynamics of CAM photosynthesis in pineapple

Wai, C. M., VanBuren, R., Zhang, J., Huang, L., Miao, W., Edger, P. P., Yim, W. C., Priest, H. D., Meyers, B. C., Mockler, T., Smith, J. A. C., Cushman, J. C. & Ming, R., Oct 2017, In : Plant Journal. 92, 1, p. 19-30 12 p.

Research output: Contribution to journalArticle

The effects of seasonal and long-term climatic variability on Neotropical flowering phenology: An ecoinformatic analysis of aerial pollen data

Haselhorst, D. S., Tcheng, D. K., Moreno, J. E. & Punyasena, S. W., Sep 2017, In : Ecological Informatics. 41, p. 54-63 10 p.

Research output: Contribution to journalArticle

The impact of species-neutral stage structure on macroecological patterns

D’Andrea, R. & O’Dwyer, J. P., Dec 1 2017, In : Theoretical Ecology. 10, 4, p. 433-442 10 p.

Research output: Contribution to journalArticle

The impact of water management practices on subtropical pasture methane emissions and ecosystem service payments

Chamberlain, S. D., Groffman, P. M., Boughton, E. H., Gomez-Casanovas, N., DeLucia, E. H., Bernacchi, C. J. & Sparks, J. P., Jun 2017, In : Ecological Applications. 27, 4, p. 1199-1209 11 p.

Research output: Contribution to journalArticle

The importance of ENSO nonlinearities in tropical pacific response to external forcing

Karamperidou, C., Jin, F. F. & Conroy, J. L., Oct 1 2017, In : Climate Dynamics. 49, 7-8, p. 2695-2704 10 p.

Research output: Contribution to journalArticle

The Kalanchoë genome provides insights into convergent evolution and building blocks of crassulacean acid metabolism

Yang, X., Hu, R., Yin, H., Jenkins, J., Shu, S., Tang, H., Liu, D., Weighill, D. A., Cheol Yim, W., Ha, J., Heyduk, K., Goodstein, D. M., Guo, H. B., Moseley, R. C., Fitzek, E., Jawdy, S., Zhang, Z., Xie, M., Hartwell, J., Grimwood, J. & 29 others, Abraham, P. E., Mewalal, R., Beltrán, J. D., Boxall, S. F., Dever, L. V., Palla, K. J., Albion, R., Garcia, T., Mayer, J. A., Don Lim, S., Man Wai, C., Peluso, P., Van Buren, R., De Paoli, H. C., Borland, A. M., Guo, H., Chen, J. G., Muchero, W., Yin, Y., Jacobson, D. A., Tschaplinski, T. J., Hettich, R. L., Ming, R., Winter, K., Leebens-Mack, J. H., Smith, J. A. C., Cushman, J. C., Schmutz, J. & Tuskan, G. A., Dec 1 2017, In : Nature communications. 8, 1, 1899.

Research output: Contribution to journalArticle

The pomegranate (Punica granatum L.) genome and the genomics of punicalagin biosynthesis

Qin, G., Xu, C., Ming, R., Tang, H., Guyot, R., Kramer, E. M., Hu, Y., Yi, X., Qi, Y., Xu, X., Gao, Z., Pan, H., Jian, J., Tian, Y., Yue, Z. & Xu, Y., Sep 2017, In : Plant Journal. 91, 6, p. 1108-1128 21 p.

Research output: Contribution to journalArticle

The primacy of multidecadal to centennial variability over late-Holocene forced change of the Asian Monsoon on the southern Tibetan Plateau

Conroy, J. L., Hudson, A. M., Overpeck, J. T., Liu, K. B., Wang, L. & Cole, J. E., Jan 15 2017, In : Earth and Planetary Science Letters. 458, p. 337-348 12 p.

Research output: Contribution to journalArticle

The social inefficiency of regulating indirect land use change due to biofuels

Khanna, M., Wang, W., Hudiburg, T. W. & Delucia, E. H., Jun 26 2017, In : Nature communications. 8, 15513.

Research output: Contribution to journalArticle

Time dependent genetic analysis links field and controlled environment phenotypes in the model C4grass Setaria

Feldman, M. J., Paul, R. E., Banan, D., Barrett, J. F., Sebastian, J., Yee, M. C., Jiang, H., Lipka, A. E., Brutnell, T. P., Dinneny, J. R., Leakey, A. D. B. & Baxter, I., 2017, In : PLoS genetics. 13, 6, e1006841.

Research output: Contribution to journalArticle

Transcriptome dynamics of Camellia sinensis in response to continuous salinity and drought stress

Zhang, Q., Cai, M., Yu, X., Wang, L., Guo, C., Ming, R. & Zhang, J., Aug 1 2017, In : Tree Genetics and Genomes. 13, 4, 78.

Research output: Contribution to journalArticle

Trees harness the power of microbes to survive climate change

Lau, J. A., Lennon, J. T. & Heath, K. D., Oct 17 2017, In : Proceedings of the National Academy of Sciences of the United States of America. 114, 42, p. 11009-11011 3 p.

Research output: Contribution to journalComment/debate

Tropical Pacific climate variability over the last 6000 years as recorded in Bainbridge Crater Lake, Galápagos

Thompson, D. M., Conroy, J. L., Collins, A., Hlohowskyj, S. R., Overpeck, J. T., Riedinger-Whitmore, M., Cole, J. E., Bush, M. B., Whitney, H., Corley, T. L. & Kannan, M. S., Aug 2017, In : Paleoceanography. 32, 8, p. 903-922 20 p.

Research output: Contribution to journalArticle

Tyrosine-610 in the receptor kinase BAK1 does not play a major role in brassinosteroid signaling or innate immunity

Singh, V., Perraki, A., Kim, S. Y., Shrivastava, S., Lee, J. H., Zhao, Y., Schwessinger, B., Oh, M. H., Marshall-Colon, A., Zipfel, C. & Huber, S. C., Aug 2 2017, In : Frontiers in Plant Science. 8, 1273.

Research output: Contribution to journalArticle

Uncertainty in measurements of the photorespiratory CO2 compensation point and its impact on models of leaf photosynthesis

Walker, B. J., Orr, D. J., Carmo-Silva, E., Parry, M. A. J., Bernacchi, C. J. & Ort, D. R., Jun 1 2017, In : Photosynthesis research. 132, 3, p. 245-255 11 p.

Research output: Contribution to journalArticle

Understanding and improving global crop response to ozone pollution

Ainsworth, E. A., Jun 2017, In : Plant Journal. 90, 5, p. 886-897 12 p.

Research output: Contribution to journalArticle

Wind dispersal is predicted by tree, not diaspore, traits in comparisons of Neotropical species

Augspurger, C. K., Franson, S. E. & Cushman, K. C., Apr 1 2017, In : Functional Ecology. 31, 4, p. 808-820 13 p.

Research output: Contribution to journalArticle

Yakety Yak

Berenbaum, M. R., Dec 1 2017, In : American Entomologist. 63, 4, p. 205-207 3 p.

Research output: Contribution to journalComment/debate

2018

Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L.

Zhang, J., Zhang, X., Tang, H., Zhang, Q., Hua, X., Ma, X., Zhu, F., Jones, T., Zhu, X., Bowers, J., Wai, C. M., Zheng, C., Shi, Y., Chen, S., Xu, X., Yue, J., Nelson, D. R., Huang, L., Li, Z., Xu, H. & 88 others, Zhou, D., Wang, Y., Hu, W., Lin, J., Deng, Y., Pandey, N., Mancini, M., Zerpa, D., Nguyen, J. K., Wang, L., Yu, L., Xin, Y., Ge, L., Arro, J., Han, J. O., Chakrabarty, S., Pushko, M., Zhang, W., Ma, Y., Ma, P., Lv, M., Chen, F., Zheng, G., Xu, J., Yang, Z., Deng, F., Chen, X., Liao, Z., Zhang, X., Lin, Z., Lin, H., Yan, H., Kuang, Z., Zhong, W., Liang, P., Wang, G., Yuan, Y., Shi, J., Hou, J., Lin, J., Jin, J., Cao, P., Shen, Q., Jiang, Q., Zhou, P., Ma, Y., Zhang, X., Xu, R., Liu, J., Zhou, Y., Jia, H., Ma, Q., Qi, R., Zhang, Z., Fang, J., Fang, H., Song, J., Wang, M., Dong, G., Wang, G., Chen, Z., Ma, T., Liu, H., Dhungana, S. R., Huss, S. E., Yang, X., Sharma, A., Trujillo, J. H., Martinez, M. C., Hudson, M., Riascos, J. J., Schuler, M., Chen, L. Q., Braun, D. M., Li, L., Yu, Q., Wang, J., Wang, K., Schatz, M. C., Heckerman, D., Van Sluys, M. A., Souza, G. M., Moore, P. H., Sankoff, D., VanBuren, R., Paterson, A. H., Nagai, C. & Ming, R., Nov 1 2018, In : Nature Genetics. 50, 11, p. 1565-1573 9 p.

Research output: Contribution to journalArticle

Alley cropping: Global patterns of species composition and function

Wolz, K. J. & DeLucia, E. H., Jan 15 2018, In : Agriculture, Ecosystems and Environment. 252, p. 61-68 8 p.

Research output: Contribution to journalReview article

Approaches and challenges to the study of loess - Introduction to the LoessFest Special Issue

Schaetzl, R. J., Bettis, E. A., Crouvi, O., Fitzsimmons, K. E., Grimley, D. A., Hambach, U., Lehmkuhl, F., Marković, S. B., Mason, J. A., Owczarek, P., Roberts, H. M., Rousseau, D. D., Stevens, T., Vandenberghe, J., Zárate, M., Veres, D., Yang, S., Zech, M., Conroy, J. L., Dave, A. K. & 8 others, Faust, D., Hao, Q., Obreht, I., Prud'Homme, C., Smalley, I., Tripaldi, A., Zeeden, C. & Zech, R., May 1 2018, In : Quaternary Research (United States). 89, 3, p. 563-618 56 p.

Research output: Contribution to journalReview article

BETYdb: a yield, trait, and ecosystem service database applied to second-generation bioenergy feedstock production

LeBauer, D., Kooper, R., Mulrooney, P., Rohde, S., Wang, D., Long, S. P. & Dietze, M. C., Jan 2018, In : GCB Bioenergy. 10, 1, p. 61-71 11 p.

Research output: Contribution to journalArticle

Big data in agriculture and their analyses

Shrivastava, S. & Marshall-Colon, A., Jan 1 2018, Encyclopedia of Food Security and Sustainability. Elsevier, p. 233-237 5 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Biorefinery for combined production of jet fuel and ethanol from lipid-producing sugarcane: a techno-economic evaluation

Kumar, D., Long, S. P. & Singh, V., Feb 1 2018, In : GCB Bioenergy. 10, 2, p. 92-107 16 p.

Research output: Contribution to journalArticle

Biphasic concentration-dependent interaction between imidacloprid and dietary phytochemicals in honey bees (Apis mellifera)

Wong, M. J., Liao, L. H. & Berenbaum, M. R., Nov 2018, In : PloS one. 13, 11, e0206625.

Research output: Contribution to journalArticle

Born to run? Quantifying the balance of prior bias and new information in prey escape decisions

Sutton, N. M. & O’dwyer, J. P., Sep 1 2018, In : American Naturalist. 192, 3, p. 321-331 11 p.

Research output: Contribution to journalArticle

Canopy warming accelerates development in soybean and maize, offsetting the delay in soybean reproductive development by elevated CO2 concentrations

Ruiz-Vera, U. M., Siebers, M. H., Jaiswal, D., Ort, D. R. & Bernacchi, C. J., Dec 2018, In : Plant Cell and Environment. 41, 12, p. 2806-2820 15 p.

Research output: Contribution to journalArticle

Chlorophyll can be reduced in crop canopies with little penalty to photosynthesis

Walker, B. J., Drewry, D. T., Slattery, R. A., VanLoocke, A., Cho, Y. B. & Ort, D. R., Feb 2018, In : Plant physiology. 176, 2, p. 1215-1232 18 p.

Research output: Contribution to journalArticle

Chromosome Nomenclature and Cytological Characterization of Sacred Lotus

Meng, Z., Hu, X., Zhang, Z., Li, Z., Lin, Q., Yang, M., Yang, P., Ming, R., Yu, Q. & Wang, K., Mar 1 2018, In : Cytogenetic and Genome Research. 153, 4, p. 223-231 9 p.

Research output: Contribution to journalArticle

Cinema-tick experience

Berenbaum, M., Jun 13 2018, In : American Entomologist. 64, 2, p. 67-70 4 p.

Research output: Contribution to journalArticle

Comparative analysis of homologous sequences of saccharum officinarum and saccharum spontaneum reveals independent polyploidization events

Sharma, A., Song, J., Lin, Q., Singh, R., Ramos, N., Wang, K., Zhang, J., Ming, R. & Yu, Q., Sep 25 2018, In : Frontiers in Plant Science. 9, 1414.

Research output: Contribution to journalArticle

Comparative CYP‐omic analysis between the DDT‐susceptible and ‐resistant Drosophila melanogaster strains 91‐C and 91‐R

Seong, K. M., Coates, B. S., Berenbaum, M. R., Clark, J. M. & Pittendrigh, B. R., Nov 2018, In : Pest Management Science. 74, 11, p. 2530-2543 14 p.

Research output: Contribution to journalArticle

Comparison of the mitochondrial genome sequences of six Annulohypoxylon stygium isolates suggests short fragment insertions as a potential factor leading to larger genomic size

Deng, Y., Hsiang, T., Li, S., Lin, L., Wang, Q., Chen, Q., Xie, B. & Ming, R., Sep 10 2018, In : Frontiers in Microbiology. 9, SEP, 2079.

Research output: Contribution to journalArticle

Consensus, uncertainties and challenges for perennial bioenergy crops and land use

Whitaker, J., Field, J. L., Bernacchi, C. J., Cerri, C. E. P., Ceulemans, R., Davies, C. A., DeLucia, E. H., Donnison, I. S., McCalmont, J. P., Paustian, K., Rowe, R. L., Smith, P., Thornley, P. & McNamara, N. P., Mar 2018, In : GCB Bioenergy. 10, 3, p. 150-164 15 p.

Research output: Contribution to journalReview article

Context-dependent and variable effects of endohyphal bacteria on interactions between fungi and seeds

Shaffer, J. P., Zalamea, P. C., Sarmiento, C., Gallery, R. E., Dalling, J. W., Davis, A. S., Baltrus, D. A. & Arnold, A. E., Dec 2018, In : Fungal Ecology. 36, p. 117-127 11 p.

Research output: Contribution to journalArticle

Conversion of grazed pastures to energy cane as a biofuel feedstock alters the emission of GHGs from soils in Southeastern United States

Gomez-Casanovas, N., DeLucia, N. J., Hudiburg, T. W., Bernacchi, C. J. & DeLucia, E. H., Jan 2018, In : Biomass and Bioenergy. 108, p. 312-322 11 p.

Research output: Contribution to journalArticle