Research Output

2016

Pineapple Genome: A Reference for Monocots and CAM Photosynthesis

Ming, R., Wai, C. M. & Guyot, R., Nov 1 2016, In : Trends in Genetics. 32, 11, p. 690-696 7 p.

Research output: Contribution to journalShort survey

Plants in silico: Why, why now and what?-an integrative platform for plant systems biology research

Zhu, X. G., Lynch, J. P., Lebauer, D. S., Millar, A. J., Stitt, M. & Long, S. P., May 1 2016, In : Plant Cell and Environment. 39, 5, p. 1049-1057 9 p.

Research output: Contribution to journalReview article

Productivity of North American grasslands is increased under future climate scenarios despite rising aridity

Hufkens, K., Keenan, T. F., Flanagan, L. B., Scott, R. L., Bernacchi, C. J., Joo, E., Brunsell, N. A., Verfaillie, J. & Richardson, A. D., Jul 1 2016, In : Nature Climate Change. 6, 7, p. 710-714 5 p.

Research output: Contribution to journalArticle

Reproducing static and dynamic biodiversity patterns in tropical forests: The critical role of environmental variance

Fung, T., O'Dwyer, J. P., Rahman, K. A. B. D., Fletcher, C. D. & Chisholm, R. A., May 1 2016, In : Ecology. 97, 5, p. 1207-1217 11 p.

Research output: Contribution to journalArticle

Rhizobia: tractable models for bacterial evolutionary ecology

Heath, K. D. & Grillo, M. A., Dec 1 2016, In : Environmental Microbiology. 18, 12, p. 4307-4311 5 p.

Research output: Contribution to journalArticle

Seedling growth responses to phosphorus reflect adult distribution patterns of tropical trees

Zalamea, P. C., Turner, B. L., Winter, K., Jones, F. A., Sarmiento, C. & Dalling, J. W., Oct 1 2016, In : The New phytologist. 212, 2, p. 400-408 9 p.

Research output: Contribution to journalArticle

Soil nutrient removal by four potential bioenergy crops: Zea mays, Panicum virgatum, Miscanthus×giganteus, and prairie

Masters, M. D., Black, C. K., Kantola, I. B., Woli, K. P., Voigt, T., David, M. B. & DeLucia, E. H., Jan 15 2016, In : Agriculture, Ecosystems and Environment. 216, p. 51-60 10 p.

Research output: Contribution to journalArticle

Spatially Aware Dictionary Learning and Coding for Fossil Pollen Identification

Kong, S., Punyasena, S. & Fowlkes, C., Dec 16 2016, Proceedings - 29th IEEE Conference on Computer Vision and Pattern Recognition Workshops, CVPRW 2016. IEEE Computer Society, p. 1305-1314 10 p. 7789655. (IEEE Computer Society Conference on Computer Vision and Pattern Recognition Workshops).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Speaking of insects⋯

Berenbaum, M. R., Sep 23 2016, In : Science. 353, 6306, 1 p.

Research output: Contribution to journalEditorial

Structure, phylogeny, allelic haplotypes and expression of sucrose transporter gene families in Saccharum

Zhang, Q., Hu, W., Zhu, F., Wang, L., Yu, Q., Ming, R. & Zhang, J., Feb 1 2016, In : BMC genomics. 17, 1, 88.

Research output: Contribution to journalArticle

Techno-economic analysis of biodiesel and ethanol co-production from lipid-producing sugarcane

Huang, H., Long, S. & Singh, V., May 1 2016, In : Biofuels, Bioproducts and Biorefining. 10, 3, p. 299-315 17 p.

Research output: Contribution to journalArticle

Technoeconomic Analysis of Biodiesel and Ethanol Production from Lipid-Producing Sugarcane and Sweet Sorghum

Huang, H., Long, S. P., Clemente, T. E. & Singh, V., Dec 2016, In : Industrial Biotechnology. 12, 6, p. 357-365 9 p.

Research output: Contribution to journalArticle

The Costs of Photorespiration to Food Production Now and in the Future

Walker, B. J., Vanloocke, A., Bernacchi, C. J. & Ort, D. R., Apr 29 2016, In : Annual Review of Plant Biology. 67, p. 107-129 23 p.

Research output: Contribution to journalReview article

The influence of drought and heat stress on long-term carbon fluxes of bioenergy crops grown in the Midwestern USA

Joo, E., Hussain, M. Z., Zeri, M., Masters, M. D., Miller, J. N., Gomez-Casanovas, N., DeLucia, E. H. & Bernacchi, C. J., Sep 1 2016, In : Plant Cell and Environment. 39, 9, p. 1928-1940 13 p.

Research output: Contribution to journalArticle

The plastid casein kinase 2 phosphorylates rubisco activase at the Thr-78 site but is not essential for regulation of rubisco activation state

Kim, S. Y., Bender, K. W., Walker, B. J., Zielinski, R. E., Spalding, M. H., Ort, D. R. & Huber, S. C., Mar 31 2016, In : Frontiers in Plant Science. 7, MAR2016, 404.

Research output: Contribution to journalArticle

The role of the Southern Hemisphere in the evolutionary history of Apiaceae, a mostly north temperate plant family

Calviño, C. I., Teruel, F. E. & Downie, S. R., Feb 1 2016, In : Journal of Biogeography. 43, 2, p. 398-409 12 p.

Research output: Contribution to journalArticle

Transcriptome profiling revealed stress-induced and disease resistance genes up-regulated in PRSV resistant transgenic papaya

Fang, J., Lin, A., Qiu, W., Cai, H., Umar, M., Chen, R. & Ming, R., Jun 16 2016, In : Frontiers in Plant Science. 7, JUNE2016, 855.

Research output: Contribution to journalArticle

Two tropical conifers show strong growth and water-use efficiency responses to altered CO2 concentration

Dalling, J. W., Cernusak, L. A., Winter, K., Aranda, J., Garcia, M., Virgo, A., Cheesman, A. W., Baresch, A., Jaramillo, C. & Turner, B. L., Nov 1 2016, In : Annals of botany. 118, 6, p. 1113-1125 13 p.

Research output: Contribution to journalArticle

Urbana house ants 2.0: Revisiting M. R. Smith's 1926 survey of house-infesting ants in central Illinois after 87 years

Belcher, A. K., Berenbaum, M. R. & Suarez, A. V., Jan 1 2016, In : American Entomologist. 62, 3, p. 182-193 12 p.

Research output: Contribution to journalArticle

Variation in ectomycorrhizal fungal communities associated with Oreomunnea mexicana (Juglandaceae) in a Neotropical montane forest

Corrales, A., Arnold, A. E., Ferrer, A., Turner, B. L. & Dalling, J. W., Jan 1 2016, In : Mycorrhiza. 26, 1, p. 1-17 17 p.

Research output: Contribution to journalArticle

Variation in wood nutrients along a tropical soil fertility gradient

Heineman, K. D., Turner, B. L. & Dalling, J. W., Jul 1 2016, In : The New phytologist. 211, 2, p. 440-454 15 p.

Research output: Contribution to journalArticle

Visual recognition software for binary classification and its application to spruce pollen identification

Tcheng, D. K., Nayak, A. K., Fowlkes, C. C. & Punyasena, S. W., Feb 2016, In : PloS one. 11, 2, e0148879.

Research output: Contribution to journalArticle

2017

A comparative genome analysis of Cercospora sojina with other members of the pathogen genus Mycosphaerella on different plant hosts

Zeng, F., Lian, X., Zhang, G., Yu, X., Bradley, C. A. & Ming, R., Sep 2017, In : Genomics Data. 13, p. 54-63 10 p.

Research output: Contribution to journalArticle

Allosteric Control of a Plant Receptor Kinase through S-Glutathionylation

Moffett, A. S., Bender, K. W., Huber, S. C. & Shukla, D., Dec 5 2017, In : Biophysical journal. 113, 11, p. 2354-2363 10 p.

Research output: Contribution to journalArticle

A morphometric analysis of vegetation patterns in dryland ecosystems

Mander, L., Dekker, S. C., Li, M., Mio, W., Punyasena, S. & Lenton, T. M., Feb 15 2017, In : Royal Society Open Science. 4, 2, 60443.

Research output: Contribution to journalArticle

A realistic meteorological assessment of perennial biofuel crop deployment: a Southern Great Plains perspective

Wagner, M., Wang, M., Miguez-Macho, G., Miller, J., VanLoocke, A., Bagley, J. E., Bernacchi, C. J. & Georgescu, M., Jun 2017, In : GCB Bioenergy. 9, 6, p. 1024-1041 18 p.

Research output: Contribution to journalArticle

A roadmap for improving the representation of photosynthesis in Earth system models

Rogers, A., Medlyn, B. E., Dukes, J. S., Bonan, G., von Caemmerer, S., Dietze, M. C., Kattge, J., Leakey, A. D. B., Mercado, L. M., Niinemets, Ü., Prentice, I. C., Serbin, S. P., Sitch, S., Way, D. A. & Zaehle, S., Jan 1 2017, In : New Phytologist. 213, 1, p. 22-42 21 p.

Research output: Contribution to journalComment/debate

Assessing the potential to decrease the Gulf of Mexico hypoxic zone with Midwest US perennial cellulosic feedstock production

VanLoocke, A., Twine, T. E., Kucharik, C. J. & Bernacchi, C. J., May 1 2017, In : GCB Bioenergy. 9, 5, p. 858-875 18 p.

Research output: Contribution to journalArticle

Autophosphorylation-based calcium (Ca2+) sensitivity priming and Ca2+/calmodulin inhibition of Arabidopsis thaliana Ca2+-dependent protein kinase 28 (CPK28)

Bender, K. W., Blackburn, R. K., Monaghan, J., Derbyshire, P., Menke, F. L. H., Zipfel, C., Goshe, M. B., Zielinski, R. E. & Huber, S. C., Mar 10 2017, In : Journal of Biological Chemistry. 292, 10, p. 3988-4002 15 p.

Research output: Contribution to journalArticle

Behavioral responses of honey bees (Apis mellifera) to natural and synthetic xenobiotics in food

Liao, L. H., Wu, W. Y. & Berenbaum, M. R., Dec 1 2017, In : Scientific reports. 7, 1, 15924.

Research output: Contribution to journalArticle

Bile acid sodium symporter BASS6 can transport glycolate and is involved in photorespiratory metabolism in Arabidopsis thaliana

South, P. F., Walker, B. J., Cavanagh, A. P., Rolland, V., Badger, M. & Ort, D. R., Apr 2017, In : Plant Cell. 29, 4, p. 808-823 16 p.

Research output: Contribution to journalArticle

Brazilian sugarcane ethanol as an expandable green alternative to crude oil use

Jaiswal, D., De Souza, A. P., Larsen, S., Lebauer, D. S., Miguez, F. E., Sparovek, G., Bollero, G., Buckeridge, M. S. & Long, S. P., Nov 1 2017, In : Nature Climate Change. 7, 11, p. 788-792 5 p.

Research output: Contribution to journalArticle

Can editors save peer review from peer reviewers?

D’Andrea, R. & O’Dwyer, J. P., Oct 2017, In : PloS one. 12, 10, e0186111.

Research output: Contribution to journalArticle

Cell wall metabolism and hexose allocation contribute to biomass accumulation in high yielding extreme segregants of a Saccharum interspecific F2 population

Wai, C. M., Zhang, J., Jones, T. C., Nagai, C. & Ming, R., Oct 11 2017, In : BMC genomics. 18, 1, 773.

Research output: Contribution to journalArticle

Charcoal reflectance suggests heating duration and fuel moisture affected burn severity in four Alaskan tundra wildfires

Hudspith, V. A., Belcher, C. M., Barnes, J., Dash, C. B., Kelly, R. & Hu, F. S., Jan 1 2017, In : International Journal of Wildland Fire. 26, 4, p. 306-316 11 p.

Research output: Contribution to journalArticle

Climatic thresholds shape northern high-latitude fire regimes and imply vulnerability to future climate change

Young, A. M., Higuera, P. E., Duffy, P. A. & Hu, F. S., May 2017, In : Ecography. 40, 5, p. 606-617 12 p.

Research output: Contribution to journalArticle

Constraints of cold and shade on the phenology of spring ephemeral herb species

Augspurger, C. K. & Salk, C. F., Jan 1 2017, In : Journal of Ecology. 105, 1, p. 246-254 9 p.

Research output: Contribution to journalArticle

Contribution of above- and belowground bioenergy crop residues to soil carbon

Carvalho, J. L. N., Hudiburg, T. W., Franco, H. C. J. & DeLucia, E. H., Aug 2017, In : GCB Bioenergy. 9, 8, p. 1333-1343 11 p.

Research output: Contribution to journalArticle

Crops in silico: Generating virtual crops using an integrative and multi-scale modeling platform

Marshall-Colon, A., Long, S. P., Allen, D. K., Allen, G. D., Beard, D. A., Benes, B., Von Caemmerer, S., Christensen, A. J., Cox, D. J., Hart, J. C., Hirst, P. M., Kannan, K., Katz, D. S., Lynch, J. P., Millar, A. J., Panneerselvam, B., Price, N. D., Prusinkiewicz, P., Raila, D., Shekar, R. G. & 9 others, Shrivastava, S., Shukla, D., Srinivasan, V., Stitt, M., Turk, M. J., Voit, E. O., Wang, Y., Yin, X. & Zhu, X. G., May 15 2017, In : Frontiers in Plant Science. 8, 786.

Research output: Contribution to journalArticle

Cross-biome assessment of gross soil nitrogen cycling in California ecosystems

Yang, W. H., Ryals, R. A., Cusack, D. F. & Silver, W. L., Apr 1 2017, In : Soil Biology and Biochemistry. 107, p. 144-155 12 p.

Research output: Contribution to journalArticle

Cytochrome P450 diversification and hostplant utilization patterns in specialist and generalist moths: Birth, death and adaptation

Calla, B., Noble, K., Johnson, R. M., Walden, K. K. O., Schuler, M. A., Robertson, H. M. & Berenbaum, M. R., Nov 2017, In : Molecular ecology. 26, 21, p. 6021-6035 15 p.

Research output: Contribution to journalArticle

Decline in herb species diversity over two decades in a temperate deciduous forest in Illinois1

Augspurger, C. K. & Buck, S., Oct 1 2017, In : Journal of the Torrey Botanical Society. 144, 4, p. 392-405 14 p.

Research output: Contribution to journalArticle

Decreasing, not increasing, leaf area will raise crop yields under global atmospheric change

Srinivasan, V., Kumar, P. & Long, S. P., Apr 1 2017, In : Global change biology. 23, 4, p. 1626-1635 10 p.

Research output: Contribution to journalArticle

Development of a Three-Dimensional Ray-Tracing Model of Sugarcane Canopy Photosynthesis and Its Application in Assessing Impacts of Varied Row Spacing

Wang, Y., Song, Q., Jaiswal, D., P. de Souza, A., Long, S. P. & Zhu, X. G., Sep 1 2017, In : Bioenergy Research. 10, 3, p. 626-634 9 p.

Research output: Contribution to journalArticle

Development of male-specific markers and identification of sex reversal mutants in papaya

Liao, Z., Yu, Q. & Ming, R., Feb 1 2017, In : Euphytica. 213, 2, 53.

Research output: Contribution to journalArticle

Diurnal cycling transcription factors of pineapple revealed by genome-wide annotation and global transcriptomic analysis

Sharma, A., Wai, C. M., Ming, R. & Yu, Q., Sep 1 2017, In : Genome biology and evolution. 9, 9, p. 2170-2190 21 p.

Research output: Contribution to journalArticle

Diversity in stomatal function is integral to modelling plant carbon and water fluxes

Wolz, K. J., Wertin, T. M., Abordo, M., Wang, D. & Leakey, A., Sep 1 2017, In : Nature Ecology and Evolution. 1, 9, p. 1292-1298 7 p.

Research output: Contribution to journalArticle