Research Output 1973 2019

2019

A Comparative Analysis of Anthropogenic CO2 Emissions at City Level Using OCO-2 Observations: A Global Perspective

Fu, P., Xie, Y., Moore, C. E., Myint, S. W. & Bernacchi, C., Jan 1 2019, (Accepted/In press) In : Earth's Future.

Research output: Contribution to journalArticle

Open Access
global perspective
fossil fuel
seasonality
vegetation
carbon

A comparative analysis of complete plastid genomes from Prangos fedtschenkoi and Prangos lipskyi (Apiaceae)

Mustafina, F. U., Yi, D. K., Choi, K., Shin, C. H., Tojibaev, K. S. & Downie, S. R., Jan 1 2019, In : Ecology and Evolution. 9, 1, p. 364-377 14 p.

Research output: Contribution to journalArticle

Prangos
Apiaceae
plastid
genome
intergenic DNA

Alder distribution and expansion across a tundra hillslope: implications for local N cycling

Salmon, V. G., Breen, A. L., Kumar, J., Lara, M. J., Thornton, P. E., Wullschleger, S. D. & Iversen, C. M., 2019, (Accepted/In press) In : Frontiers in Plant Science.

Research output: Contribution to journalArticle

Open Access
Alnus
tundra
shrublands
savannas
plant communities

Ammonia flux measurements above a corn canopy using relaxed eddy accumulation and a flux gradient system

Nelson, A. J., Lichiheb, N., Koloutsou-Vakakis, S., Rood, M. J., Heuer, M., Myles, L. T., Joo, E., Miller, J. & Bernacchi, C., Jan 15 2019, In : Agricultural and Forest Meteorology. 264, p. 104-113 10 p.

Research output: Contribution to journalArticle

flux measurement
eddy
ammonia
maize
canopy

A physical model-based method for retrieving urban land surface temperatures under cloudy conditions

Fu, P., Xie, Y., Weng, Q., Myint, S., Meacham-Hensold, K. & Bernacchi, C., Sep 1 2019, In : Remote Sensing of Environment. 230, 111191.

Research output: Contribution to journalArticle

physical models
surface temperature
land surface
Mean square error
Temperature

Are we approaching a water ceiling to maize yields in the United States?

Delucia, E. H., Chen, S., Guan, K., Peng, B., Li, Y., Gomez-Casanovas, N., Kantola, I. B., Bernacchi, C., Huang, Y., Long, S. P. & Ort, D. R., Jun 18 2019, In : Ecosphere. 10, 6, e02773.

Research output: Contribution to journalArticle

Open Access
maize
corn
vapor pressure
water
water use efficiency

Assembly of allele-aware, chromosomal-scale autopolyploid genomes based on Hi-C data

Zhang, X., Zhang, S., Zhao, Q., Ming, R. R. & Tang, H., Aug 1 2019, In : Nature Plants. 5, 8, p. 833-845 13 p.

Research output: Contribution to journalArticle

autopolyploidy
alleles
genome
chromosomes
diploidy

A subsidiary cell-localized glucose transporter promotes stomatal conductance and photosynthesis

Wang, H., Yan, S., Xin, H., Huang, W., Zhang, H., Teng, S., Yu, Y. C., Fernie, A. R., Lu, X., Li, P., Li, S., Zhang, C., Ruan, Y. L., Chen, L. & Langa, Z., Jun 1 2019, In : Plant Cell. 31, 6, p. 1328-1343 16 p.

Research output: Contribution to journalArticle

glucose transporters
Facilitative Glucose Transport Proteins
Photosynthesis
stomatal conductance
Clustered Regularly Interspaced Short Palindromic Repeats

Automated detection of thermoerosion in permafrost ecosystems using temporally dense Landsat image stacks

Lara, M. J., Chipman, M. L. & Hu, F. S., Feb 1 2019, In : Remote Sensing of Environment. 221, p. 462-473 12 p.

Research output: Contribution to journalArticle

Permafrost
permafrost
Landsat
Ecosystems
Lakes

Biomass yield in a genetically diverse Miscanthus sinensis germplasm panel evaluated at five locations revealed individuals with exceptional potential

Clark, L. V., Dwiyanti, M. S., Anzoua, K. G., Brummer, J. E., Ghimire, B. K., Głowacka, K., Hall, M., Heo, K., Jin, X., Lipka, A. E., Peng, J., Yamada, T., Yoo, J. H., Yu, C. Y., Zhao, H., Long, S. P. & Sacks, E. J., Oct 1 2019, In : GCB Bioenergy. 11, 10, p. 1125-1145 21 p.

Research output: Contribution to journalArticle

Open Access
Miscanthus giganteus
Miscanthus sinensis
germplasm
Biomass
biomass

Black walnut alley cropping is economically competitive with row crops in the Midwest USA

Wolz, K. J. & Delucia, E. H., Jan 1 2019, In : Ecological Applications. 29, 1, e01829.

Research output: Contribution to journalArticle

alley cropping
plantation forestry
crop
discount rate
profitability

BSD2 is a Rubisco-specific assembly chaperone, forms intermediary hetero-oligomeric complexes, and is nonlimiting to growth in tobacco

Conlan, B., Birch, R., Kelso, C., Holland, S., De Souza, A. P., Long, S. P., Beck, J. L. & Whitney, S. M., Apr 1 2019, In : Plant Cell and Environment. 42, 4, p. 1287-1301 15 p.

Research output: Contribution to journalArticle

Ribulose-Bisphosphate Carboxylase
ribulose-bisphosphate carboxylase
Tobacco
tobacco
Growth

Bundle sheath chloroplast volume can house sufficient Rubisco to avoid limiting C4 photosynthesis during chilling

Pignon, C. P., Lundgren, M. R., Osborne, C. P. & Long, S. P., Jan 1 2019, In : Journal of experimental botany. 70, 1, p. 357-365 9 p.

Research output: Contribution to journalArticle

Ribulose-Bisphosphate Carboxylase
C4 photosynthesis
Photosynthesis
ribulose-bisphosphate carboxylase
Chloroplasts

Comparative Analysis of SUS Gene Family between Saccharum officinarum and Saccharum spontaneum

Shi, Y., Xu, H., Shen, Q., Lin, J., Wang, Y., Hua, X., Yao, W., Yu, Q., Ming, R. R. & Zhang, J., Jan 1 2019, In : Tropical Plant Biology.

Research output: Contribution to journalArticle

Saccharum spontaneum
Saccharum
Saccharum officinarum
sucrose synthase
Genes

Comparative genomics revealed the gene evolution and functional divergence of magnesium transporter families in Saccharum

Wang, Y., Hua, X., Xu, J., Chen, Z., Fan, T., Zeng, Z., Wang, H., Hour, A. L., Yu, Q., Ming, R. R. & Zhang, J., Jan 24 2019, In : BMC genomics. 20, 1, 5437.

Research output: Contribution to journalArticle

Saccharum
Genomics
Magnesium
Genes
Mya

Consequences of climatic thresholds for projecting fire activity and ecological change

Young, A. M., Higuera, P. E., Abatzoglou, J. T., Duffy, P. A. & Hu, F. S., Apr 1 2019, In : Global Ecology and Biogeography. 28, 4, p. 521-532 12 p.

Research output: Contribution to journalArticle

tundra
boreal forests
uncertainty
ecosystems
climate

Deleterious mutation burden and its association with complex traits in sorghum (Sorghum bicolor)

Valluru, R., Gazave, E. E., Fernandes, S. B., Ferguson, J. N., Lozano, R., Hirannaiah, P., Zuo, T., Brown, P. J., Leakey, A., Gore, M. A., Buckler, E. S. & Bandillo, N., Mar 1 2019, In : Genetics. 211, 3, p. 1075-1087 13 p.

Research output: Contribution to journalArticle

Sorghum
Mutation
Biomass
Genome
Starch

Directions for research and training in plant omics: Big Questions and Big Data

Argueso, C. T., Assmann, S. M., Birnbaum, K. D., Chen, S., Dinneny, J. R., Doherty, C. J., Eveland, A. L., Friesner, J., Greenlee, V. R., Law, J. A., Marshall-Colon, A., Mason, G. A., O'Lexy, R., Peck, S. C., Schmitz, R. J., Song, L., Stern, D., Varagona, M. J., Walley, J. W. & Williams, C. M., Apr 1 2019, In : Plant Direct. 3, 4, e00133.

Research output: Contribution to journalArticle

Open Access
training (plants)
Education
plant biology
Research
Arabidopsis

Dissecting the nonlinear response of maize yield to high temperature stress with model-data integration

Zhu, P., Zhuang, Q., Archontoulis, S. V., Bernacchi, C. & Müller, C., Jul 1 2019, In : Global change biology. 25, 7, p. 2470-2484 15 p.

Research output: Contribution to journalArticle

Data integration
maize
Crops
crop
Temperature
Tetrapyrroles
Aminolevulinic Acid
aminolevulinic acid
Labeling
synthesis
crop production
genetic variation

Effects of triclosan and triclocarban on denitrification and N2O emissions in paddy soil

Chen, S., Chee-Sanford, J. C., Yang, W., Sanford, R. A., Chen, J., Yan, X. & Shan, J., Dec 10 2019, In : Science of the Total Environment. 695, 133782.

Research output: Contribution to journalArticle

Triclosan
Denitrification
denitrification
Soils
soil
Open Access
Panicum virgatum
bioenergy
ozone
nutrient content
feedstocks

Evolution and Expression Analysis of Starch Synthase Gene Families in Saccharum spontaneum

Ma, P., Yuan, Y., Shen, Q., Jiang, Q., Hua, X., Zhang, Q., Zhang, M., Ming, R. R. & Zhang, J., Jan 1 2019, In : Tropical Plant Biology.

Research output: Contribution to journalArticle

Starch Synthase
Saccharum spontaneum
Saccharum
starch synthase
Genes

Evolutionary shifts in fruit dispersal syndromes in Apiaceae tribe Scandiceae

Wojewódzka, A., Baczyński, J., Banasiak, Ł., Downie, S. R., Czarnocka-Cieciura, A., Gierek, M., Frankiewicz, K. & Spalik, K., May 1 2019, In : Plant Systematics and Evolution. 305, 5, p. 401-414 14 p.

Research output: Contribution to journalArticle

Open Access
Apiaceae
fruit
fruits
anemochory
spine (bones)

Excessive rainfall leads to maize yield loss of a comparable magnitude to extreme drought in the United States

Li, Y., Guan, K., Schnitkey, G. D., Delucia, E. H. & Peng, B., Jul 1 2019, In : Global change biology. 25, 7, p. 2325-2337 13 p.

Research output: Contribution to journalArticle

Open Access
Drought
Rain
drought
maize
Crops

Exploring the differential mechanisms of carotenoid biosynthesis in the yellow peel and red flesh of papaya

Shen, Y. H., Yang, F. Y., Lu, B. G., Zhao, W. W., Jiang, T., Feng, L., Chen, X. J. & Ming, R. R., Jan 16 2019, In : BMC genomics. 20, 1, 49.

Research output: Contribution to journalArticle

Carica
Carotenoids
Biosynthetic Pathways
Fruit
Lutein

Field-grown tobacco plants maintain robust growth while accumulating large quantities of a bacterial cellulase in chloroplasts

Schmidt, J. A., McGrath, J. M., Hanson, M. R., Long, S. P. & Ahner, B. A., Jul 1 2019, In : Nature Plants. 5, 7, p. 715-721 7 p.

Research output: Contribution to journalArticle

endo-1,4-beta-glucanase
tobacco
chloroplasts
recombinant proteins
proteins

Genome-Wide Analysis of Nitrate Transporter (NRT/NPF) Family in Sugarcane Saccharum spontaneum L.

Wang, J., Li, Y., Zhu, F., Ming, R. R. & Chen, L., Jan 1 2019, In : Tropical Plant Biology.

Research output: Contribution to journalArticle

Saccharum spontaneum
Saccharum
sugarcane
transporters
nitrates

Genome-wide association and genomic prediction for biomass yield in a genetically diverse Miscanthus sinensis germplasm panel phenotyped at five locations in Asia and North America

Clark, L. V., Dwiyanti, M. S., Anzoua, K. G., Brummer, J. E., Ghimire, B. K., Głowacka, K., Hall, M., Heo, K., Jin, X., Lipka, A. E., Peng, J., Yamada, T., Yoo, J. H., Yu, C. Y., Zhao, H., Long, S. P. & Sacks, E. J., Aug 1 2019, In : GCB Bioenergy. 11, 8, p. 988-1007 20 p.

Research output: Contribution to journalArticle

Open Access
Miscanthus sinensis
germplasm
Nucleotides
Polymorphism
single nucleotide polymorphism
Ananas
Crassulacean acid metabolism
Aquaporins
Boron
aquaporins

High-throughput field phenotyping using hyperspectral reflectance and partial least squares regression (PLSR) reveals genetic modifications to photosynthetic capacity

Meacham-Hensold, K., Montes, C. M., Wu, J., Guan, K., Fu, P., Ainsworth, E., Pederson, T., Moore, C. E., Brown, K. L., Raines, C. & Bernacchi, C., Sep 15 2019, In : Remote Sensing of Environment. 231, 111176.

Research output: Contribution to journalArticle

Open Access
genetic engineering
reflectance
least squares
Throughput
phenotype

Historical soil drainage mediates the response of soil greenhouse gas emissions to intense precipitation events

Krichels, A., Delucia, E. H., Sanford, R. A., Chee-Sanford, J. & Yang, W., Feb 15 2019, In : Biogeochemistry. 142, 3, p. 425-442 18 p.

Research output: Contribution to journalArticle

soil drainage
soil gas
Gas emissions
Greenhouse gases
Drainage
Open Access
artificial intelligence
reflectance
least squares
operator regions
leaves

Impact factor impacts on early-career scientist careers

Berenbaum, M. R., Aug 20 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 34, p. 16659-16662 4 p.

Research output: Contribution to journalReview article

Open Access

Implementation of the effect of urease inhibitor on ammonia emissions following urea-based fertilizer application at a Zea mays field in central Illinois: A study with SURFATM-NH 3 model

Lichiheb, N., Myles, L. T., Personne, E., Heuer, M., Buban, M., Nelson, A. J., Koloutsou-Vakakis, S., Rood, M. J., Joo, E., Miller, J. & Bernacchi, C., May 15 2019, In : Agricultural and Forest Meteorology. 269-270, p. 78-87 10 p.

Research output: Contribution to journalArticle

urease inhibitors
fertilizer application
urea
inhibitor
ammonia

Increased temperatures may safeguard the nutritional quality of crops under future elevated CO2 concentrations

Köhler, I. H., Huber, S. C., Bernacchi, C. & Baxter, I. R., Mar 1 2019, In : Plant Journal. 97, 5, p. 872-886 15 p.

Research output: Contribution to journalArticle

Nutritive Value
nutritive value
carbon dioxide
Seeds
Temperature
Computer Simulation
Computing Methodologies
DNA Shuffling
Genome
Technology

Invasive perennial forb effects on gross soil nitrogen cycling and nitrous oxide fluxes depend on phenology

Portier, E., Silver, W. L. & Yang, W., Jul 1 2019, In : Ecology. 100, 7, e02716.

Research output: Contribution to journalArticle

soil nitrogen
nitrous oxide
phenology
Lepidium latifolium
nitrogen

In vivo evidence for a regulatory role of phosphorylation of Arabidopsis Rubisco activase at the Thr78 site

Kim, S. Y., Harvey, C. M., Giese, J., Lassowskat, I., Singh, V., Cavanagh, A. P., Spalding, M. H., Finkemeier, I., Ort, D. R. & Huber, S. C., Sep 10 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 37, p. 18723-18731 9 p.

Research output: Contribution to journalArticle

Open Access
Ribulose-Bisphosphate Carboxylase
Tissue Plasminogen Activator
Threonine
Phosphorylation
Light
oviposition deterrents
Oviposition
Edible Plants
plant fats and oils
Plant Oils

Metabolite and transcript profiling of Guinea grass (Panicum maximum Jacq) response to elevated [CO 2 ] and temperature

Wedow, J. M., Yendrek, C. R., Mello, T. R., Creste, S., Martinez, C. A. & Ainsworth, E., Apr 1 2019, In : Metabolomics. 15, 4, 51.

Research output: Contribution to journalArticle

Open Access
Guinea
Panicum
Carbon Monoxide
Metabolites
Poaceae

Microtopographic differences in soil properties and microbial community composition at the field scale

Suriyavirun, N., Krichels, A. H., Kent, A. D. & Yang, W., Apr 1 2019, In : Soil Biology and Biochemistry. 131, p. 71-80 10 p.

Research output: Contribution to journalArticle

community composition
microbial communities
microbial community
soil properties
soil property

Molecular Basis of the Glucose Transport Mechanism in Plants

Selvam, B., Yu, Y. C., Chen, L. & Shukla, D., Jun 26 2019, In : ACS Central Science. 5, 6, p. 1085-1096 12 p.

Research output: Contribution to journalArticle

Open Access
Facings
Glucose
Sugars
Free energy
Molecular dynamics

Nanodiscs as a New Tool to Examine Lipid–Protein Interactions

Denisov, I. G., Schuler, M. A. & Sligar, S., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 645-671 27 p. (Methods in Molecular Biology; vol. 2003).

Research output: Chapter in Book/Report/Conference proceedingChapter

Lipids
Lipoproteins
Proteins
Membranes
Protein Transport

Nutrient Release From Permafrost Thaw Enhances CH4 Emissions From Arctic Tundra Wetlands

Lara, M. J., Lin, D. H., Andresen, C., Lougheed, V. L. & Tweedie, C. E., Jun 1 2019, In : Journal of Geophysical Research: Biogeosciences. 124, 6, p. 1560-1573 14 p.

Research output: Contribution to journalArticle

tundra
permafrost
wetlands
Permafrost
nutrients

Optimization of PCR primers to detect phylogenetically diverse nrfA genes associated with nitrite ammonification

Cannon, J., Sanford, R. A., Connor, L., Yang, W. & Chee-Sanford, J., May 1 2019, In : Journal of Microbiological Methods. 160, p. 49-59 11 p.

Research output: Contribution to journalArticle

Open Access
Nitrites
Polymerase Chain Reaction
nitrate reductase (cytochrome)
Ammonium Compounds
Nitrates

Out of Order

Berenbaum, M. R., Mar 12 2019, In : American Entomologist. 65, 1, p. 3-5 3 p.

Research output: Contribution to journalArticle

Papaya CpbHLH1/2 regulate carotenoid biosynthesis-related genes during papaya fruit ripening

Zhou, D., Shen, Y., Zhou, P., Fatima, M., Lin, J., Yue, J., Zhang, X., Chen, L. Y. & Ming, R. R., Dec 1 2019, In : Horticulture Research. 6, 1, 80.

Research output: Contribution to journalArticle

Open Access
Carica
Biosynthesis
papayas
Carotenoids
Fruits

Partitioning the effects of deterministic and stochastic processes on species extinction risk

Fung, T., O'Dwyer, J. P. & Chisholm, R. A., Apr 1 2019, In : Ecological Complexity. 38, p. 156-167 12 p.

Research output: Contribution to journalArticle

extinction risk
stochastic processes
stochasticity
extinction
partitioning