Research Output 1968 2020

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Review article
2016

Enhancing reproducibility for computational methods

Stodden, V., McNutt, M., Bailey, D. H., Deelman, E., Gil, Y., Hanson, B., Heroux, M. A., Ioannidis, J. P. A. & Taufer, M., Dec 9 2016, In : Science. 354, 6317, p. 1240-1241 2 p.

Research output: Contribution to journalReview article

Evidence for bisphenol A-induced female infertility: a review (2007–2016)

Ziv-Gal, A. & Flaws, J. A., Sep 15 2016, In : Fertility and Sterility. 106, 4, p. 827-856 30 p.

Research output: Contribution to journalReview article

Female Infertility
Oviducts
Periodicity
Hypothalamus
Uterus

Exercise and gut immune function: Evidence of alterations in colon immune cell homeostasis and microbiome characteristics with exercise training

Cook, M. D., Allen, J. M., Pence, B. D., Wallig, M. A., Gaskins, H. R., White, B. A. & Woods, J. A., Feb 1 2016, In : Immunology and Cell Biology. 94, 2, p. 158-163 6 p.

Research output: Contribution to journalReview article

Microbiota
Colon
Homeostasis
Dysbiosis
Exercise

Experimental and Computational Mechanistic Studies Guiding the Rational Design of Molecular Electrocatalysts for Production and Oxidation of Hydrogen

Raugei, S., Helm, M. L., Hammes-Schiffer, S., Appel, A. M., O'Hagan, M., Wiedner, E. S. & Bullock, R. M., Jan 19 2016, In : Inorganic Chemistry. 55, 2, p. 445-460 16 p.

Research output: Contribution to journalReview article

electrocatalysts
Electrocatalysts
Protons
Hydrogen
Oxidation

Fluorescent nanoprobes for sensing and imaging of metal ions: Recent advances and future perspectives

Zhang, J. J., Cheng, F. F., Li, J. J., Zhu, J. J. & Lu, Y., Jun 1 2016, In : Nano Today. 11, 3, p. 309-329 21 p.

Research output: Contribution to journalReview article

Nanoprobes
Nanostructures
Nanostructured materials
Metal ions
Quantum Dots

Fossil Megaloptera (Insecta: Neuropterida) from the Lower Cretaceous Crato Formation of Brazil

Jepson, J. E. & Heads, S. W., Apr 5 2016, In : Zootaxa. 4098, 1, p. 134-144 11 p.

Research output: Contribution to journalReview article

Megaloptera
Insecta
fossils
fossil
Cretaceous

Freshwater biota and rising pCO2?

Hasler, C. T., Butman, D., Jeffrey, J. D. & Suski, C. D., Jan 1 2016, In : Ecology Letters. 19, 1, p. 98-108 11 p.

Research output: Contribution to journalReview article

biota
carbon dioxide
organisms
plankton
climate change

Genome engineering using Adeno-associated virus: Basic and clinical research applications

Gaj, T., Epstein, B. E. & Schaffer, D. V., Mar 1 2016, In : Molecular Therapy. 24, 3, p. 458-464 7 p.

Research output: Contribution to journalReview article

Dependovirus
Genome
Research
Gene Targeting
Homologous Recombination

Has photosynthetic capacity increased with 80years of soybean breeding? An examination of historical soybean cultivars

Koester, R. P., Nohl, B. M., Diers, B. W. & Ainsworth, E., May 1 2016, In : Plant Cell and Environment. 39, 5, p. 1058-1067 10 p.

Research output: Contribution to journalReview article

Soybeans
Breeding
Biomass
soybeans
breeding

High-resolution, hybrid optical trapping methods, and their application to nucleic acid processing proteins

Chemla, Y. R., Oct 1 2016, In : Biopolymers. p. 704-714 11 p.

Research output: Contribution to journalReview article

Optical Tweezers
Nucleic acids
Nucleic Acids
Proteins
Processing

Hydrogenase Enzymes and Their Synthetic Models: The Role of Metal Hydrides

Schilter, D., Camara, J. M., Huynh, M. T., Hammes-Schiffer, S. & Rauchfuss, T. B., Aug 10 2016, In : Chemical reviews. 116, 15, p. 8693-8749 57 p.

Research output: Contribution to journalReview article

Hydrogenase
Hydrides
Metals
Enzymes
Bearings (structural)

Image science at JOSA A: Editorial

Carney, P. S., Oct 2016, In : Journal of the Optical Society of America A: Optics and Image Science, and Vision. 33, 10, p. ED8

Research output: Contribution to journalReview article

Impact of early gut microbiota on immune and metabolic development and function

Wang, M., Siegel, M. H. & Donovan, S. M., Dec 1 2016, In : Seminars in Fetal and Neonatal Medicine. 21, 6, p. 380-387 8 p.

Research output: Contribution to journalReview article

Prebiotics
Microbiota
Metabolic Diseases
Immune System Diseases
Probiotics

Implementing design sprints in the education of industrial designers

Thomas, J. & Shin, S. S., Jan 1 2016, In : Design Principles and Practices. 10, 1, p. 59-73 15 p.

Research output: Contribution to journalReview article

Industrial Designer
Education
Prototype
Industrial Design
Fidelity

Influence of exercise and aging on extracellular matrix composition in the skeletal muscle stem cell niche

Garg, K. & Boppart, M. D., Nov 2016, In : Journal of Applied Physiology. 121, 5, p. 1053-1058 6 p.

Research output: Contribution to journalReview article

Stem Cell Niche
Muscle Cells
Extracellular Matrix
Skeletal Muscle
Stem Cells

Innovations in canine and feline nutrition: Technologies for food and nutrition assessment

Cattai de Godoy, M. R., Hervera, M., Swanson, K. S. & Fahey, G. C., Feb 15 2016, In : Annual Review of Animal Biosciences. 4, p. 311-333 23 p.

Research output: Contribution to journalReview article

Biomedical Technology Assessment
Nutrition Assessment
nutrition assessment
Pets
Felidae

Insect phylogenetics in the digital age

Dietrich, C. H. & Dmitriev, D. A., Dec 1 2016, In : Current Opinion in Insect Science. 18, p. 48-52 5 p.

Research output: Contribution to journalReview article

insect
phylogenetics
insects
phylogeny
data management

Intratumoral Heterogeneity of the Epigenome

Mazor, T., Pankov, A., Song, J. S. & Costello, J. F., Apr 11 2016, In : Cancer Cell. 29, 4, p. 440-451 12 p.

Research output: Contribution to journalReview article

Epigenomics
Genetic Heterogeneity
Drug Resistance
Neoplasms

Magnetomotive Optical Coherence Elastography for Magnetic Hyperthermia Dosimetry Based on Dynamic Tissue Biomechanics

Huang, P. C., Pande, P., Ahmad, A., Marjanovic, M., Spillman, D. R., Odintsov, B. & Boppart, S. A., Jul 2016, In : IEEE Journal of Selected Topics in Quantum Electronics. 22, 4, 7355327.

Research output: Contribution to journalReview article

biodynamics
Biomechanics
hyperthermia
Dosimetry
dosimeters

Manipulating photorespiration to increase plant productivity: Recent advances and perspectives for crop improvement

Betti, M., Bauwe, H., Busch, F. A., Fernie, A. R., Keech, O., Levey, M., Ort, D. R., Parry, M. A. J., Sage, R., Timm, S., Walker, B. & Weber, A. P. M., May 1 2016, In : Journal of experimental botany. 67, 10, p. 2977-2988 12 p.

Research output: Contribution to journalReview article

photorespiration
engineering
Ribulose-Bisphosphate Carboxylase
Oxygenases
Genetic Engineering

Medical diagnostics with mobile devices: Comparison of intrinsic and extrinsic sensing

Kwon, L., Long, K. D., Wan, Y., Yu, H. & Cunningham, B. T., May 1 2016, In : Biotechnology Advances. 34, 3, p. 291-304 14 p.

Research output: Contribution to journalReview article

Point-of-Care Systems
Handheld Computers
Precision Medicine
Mobile devices
Equipment and Supplies

Methods of conducting effective outreach to private well owners - A literature review and model approach

Morris, L., Wilson, S. & Kelly, W., Apr 2016, In : Journal of Water and Health. 14, 2, p. 167-182 16 p.

Research output: Contribution to journalReview article

Risk-Taking
literature review
Practice Guidelines
Communication
well

Microsporidia – Emergent Pathogens in the Global Food Chain

Stentiford, G. D., Becnel, J. J., Weiss, L. M., Keeling, P. J., Didier, E. S., Williams, B. A. P., Bjornson, S., Kent, M. L., Freeman, M. A., Brown, M. J. F., Troemel, E. R., Roesel, K., Sokolova, Y., Snowden, K. F. & Solter, L. F., Apr 1 2016, In : Trends in Parasitology. 32, 4, p. 336-348 13 p.

Research output: Contribution to journalReview article

Microsporidia
Food Chain
Microsporidiosis
Parasites
Edible Plants

Mitigating health risks associated with alcoholic beverages through metabolic engineering

Jayakody, L. N., Lane, S., Kim, H. & Jin, Y-S., Feb 1 2016, In : Current Opinion in Biotechnology. 37, p. 173-181 9 p.

Research output: Contribution to journalReview article

Metabolic engineering
Metabolic Engineering
Alcoholic Beverages
Health risks
Yeast

Modelling of bone fracture and strength at different length scales: A review

Sabet, F. A., Najafi, A. R., Hamed, E. & Jasiuk, I., Feb 6 2016, In : Interface Focus. 6, 1, 20150055.

Research output: Contribution to journalReview article

Bone Fractures
Bone
Bone and Bones
Bone Diseases
Osteoporosis

Models of the Ni-L and Ni-SIa States of the [NiFe]-Hydrogenase Active Site

Chambers, G. M., Huynh, M. T., Li, Y., Hammes-Schiffer, S., Rauchfuss, T. B., Reijerse, E. & Lubitz, W., Jan 19 2016, In : Inorganic Chemistry. 55, 2, p. 419-431 13 p.

Research output: Contribution to journalReview article

Carbon Monoxide
enzymes
isomers
Isomers
density functional theory

Molecular basis for resistance against phosphonate antibiotics and herbicides

Chekan, J. R., Cogan, D. P. & Nair, S. K., Jan 1 2016, In : MedChemComm. 7, 1, p. 28-36 9 p.

Research output: Contribution to journalReview article

glyphosate
Fosfomycin
Organophosphonates
Herbicides
Bioactivity

Molluscan models: Crepidula fornicata

Henry, J. Q. & Lyons, D. C., Aug 1 2016, In : Current Opinion in Genetics and Development. 39, p. 138-148 11 p.

Research output: Contribution to journalReview article

Snails
Clustered Regularly Interspaced Short Palindromic Repeats
Introduced Species
Gastrulation
Gastropoda

NanoEHS - Defining fundamental science needs: No easy feat when the simple itself is complex

Grassian, V. H., Haes, A. J., Mudunkotuwa, I. A., Demokritou, P., Kane, A. B., Murphy, C. J., Hutchison, J. E., Isaacs, J. A., Jun, Y. S., Karn, B., Khondaker, S. I., Larsen, S. C., Lau, B. L. T., Pettibone, J. M., Sadik, O. A., Saleh, N. B. & Teague, C., Feb 1 2016, In : Environmental Science: Nano. 3, 1, p. 15-27 13 p.

Research output: Contribution to journalReview article

nanotechnology
Nanostructured materials
Nanotechnology
catalysis
information technology

Naturally derived biomaterials for addressing inflammation in tissue regeneration

Hortensius, R. A. & Harley, B. A., Jan 1 2016, In : Experimental Biology and Medicine. 241, 10, p. 1015-1024 10 p.

Research output: Contribution to journalReview article

Tissue regeneration
Biocompatible Materials
Regeneration
Inflammation
Extracellular Matrix

Nest Predators of North American Birds: Continental Patterns and Implications

DeGregorio, B. A., Chiavacci, S. J., Benson, T. J., Sperry, J. H. & Weatherhead, P. J., Aug 1 2016, In : BioScience. 66, 8, p. 655-665 11 p.

Research output: Contribution to journalReview article

Birds
Ecosystem
nests
predators
birds

Neural networks of tinnitus in humans: Elucidating severity and habituation

Husain, F. T., Apr 1 2016, In : Hearing Research. 334, p. 37-48 12 p.

Research output: Contribution to journalReview article

Tinnitus
Magnetic Resonance Imaging
Emotions
Hearing Disorders
Parahippocampal Gyrus

New Insights into the Biosynthetic Logic of Ribosomally Synthesized and Post-translationally Modified Peptide Natural Products

Ortega, M. A. & van der Donk, W. A., Jan 21 2016, In : Cell chemical biology. 23, 1, p. 31-44 14 p.

Research output: Contribution to journalReview article

Biosynthesis
Biological Products
Synthetic Biology
Peptides
Biosynthetic Pathways

Nuclear and extranuclear-initiated estrogen receptor signaling crosstalk and endocrine resistance in breast cancer

Kulkoyluoglu, E. & Madak-Erdogan, Z., Jan 1 2016, In : Steroids. 114, p. 41-47 7 p.

Research output: Contribution to journalReview article

Estrogen Receptor alpha
Crosstalk
Estrogen Receptors
Breast Neoplasms
Estrogen Receptor beta

Nutritional cognitive neuroscience: Innovations for healthy brain aging

Zamroziewicz, M. K. & Barbey, A. K., Jun 6 2016, In : Frontiers in Neuroscience. 10, JUN, 240.

Research output: Contribution to journalReview article

Brain
Food
Health
Epidemiology
Biomarkers

On Priming Action: Conclusions from a Meta-Analysis of the Behavioral Effects of Incidentally-Presented Words

Weingarten, E., Chen, Q., McAdams, M., Yi, J., Hepler, J. & Albarracin, D., Dec 1 2016, In : Current Opinion in Psychology. 12, p. 53-57 5 p.

Research output: Contribution to journalReview article

Meta-Analysis
Publications

Paradigms lost: Reconfiguring Cahokia's mound 72 Beaded Burial

Emerson, T. E., Hedman, K. M., Hargrave, E. A., Cobb, D. E. & Thompson, A. R., Jan 1 2016, In : American Antiquity. 81, 3, p. 405-425 21 p.

Research output: Contribution to journalReview article

funeral
paradigm
symbolism
religious behavior
fertility

Performance of b-jet identification in the ATLAS experiment

Atlas Collaboration, Apr 4 2016, In : Journal of Instrumentation. 11, 4, P04008.

Research output: Contribution to journalReview article

Tagging
marking
Experiment
Hadrons
Experiments

Perspectives from man's best friend: National academy of medicine's workshop on comparative oncology

Leblanc, A. K., Breen, M., Choyke, P., Dewhirst, M., Fan, T. M., Gustafson, D. L., Helman, L. J., Kastan, M. B., Knapp, D. W., Levin, W. J., London, C., Mason, N., Mazcko, C., Olson, P. N., Page, R., Teicher, B. A., Thamm, D. H., Trent, J. M., Vail, D. M. & Khanna, C., Feb 3 2016, In : Science Translational Medicine. 8, 324, 324ps5.

Research output: Contribution to journalReview article

Medicine
Education
Research
Therapeutics
Surveys and Questionnaires

Physical activity, fitness, cognitive function, and academic achievement in children: A systematic review

Donnelly, J. E., Hillman, C. H., Castelli, D., Etnier, J. L., Lee, S., Tomporowski, P., Lambourne, K. & Szabo-Reed, A. N., Jun 1 2016, In : Medicine and Science in Sports and Exercise. 48, 6, p. 1197-1222 26 p.

Research output: Contribution to journalReview article

Physical Fitness
Cognition
Exercise
Brain
Physical Education and Training

Physical activity, fitness, cognitive function, and academic achievement in children: A systematic review

Donnelly, J. E., Hillman, C. H., Castelli, D., Etnier, J. L., Lee, S., Tomporowski, P., Lambourne, K. & Szabo-Reed, A. N., Jun 1 2016, In : Medicine and Science in Sports and Exercise. 48, 6, p. 1223-1224 2 p.

Research output: Contribution to journalReview article

Physical Fitness
Cognition
Exercise

Physical activity for cognitive and mental health in youth: A systematic review of mechanisms

Lubans, D., Richards, J., Hillman, C., Faulkner, G., Beauchamp, M., Nilsson, M., Kelly, P., Smith, J., Raine, L. & Biddle, S., Sep 2016, In : Pediatrics. 138, 3, e20161642.

Research output: Contribution to journalReview article

Mental Health
Exercise
Self Concept
PubMed
Cognition

Plants in silico: Why, why now and what?-an integrative platform for plant systems biology research

Zhu, X. G., Lynch, J. P., LeBauer, D. S., Millar, A. J., Stitt, M. & Long, S. P., May 1 2016, In : Plant Cell and Environment. 39, 5, p. 1049-1057 9 p.

Research output: Contribution to journalReview article

Systems Biology
Computer Simulation
Biological Sciences
Research
Ecosystem

Plastics to fuel: a review

Kunwar, B., Cheng, H. N., Chandrashekaran, S. R. & Sharma, B. K., Feb 2016, In : Renewable and Sustainable Energy Reviews. 54, p. 421-428 8 p.

Research output: Contribution to journalReview article

Plastics
Pyrolysis
Crude oil
Catalysts
Hydrocarbons

Polymers with autonomous life-cycle control

Patrick, J. F., Robb, M. J., Sottos, N. R., Moore, J. S. & White, S. R., Dec 14 2016, In : Nature. 540, 7633, p. 363-370 8 p.

Research output: Contribution to journalReview article

Life Cycle Stages
Tears
Polymers
Safety

Polymorphism as an emerging design strategy for high performance organic electronics

Chung, H. & Diao, Y., Jan 1 2016, In : Journal of Materials Chemistry C. 4, 18, p. 3915-3933 19 p.

Research output: Contribution to journalReview article

Polymorphism
Electronic equipment
Charge transfer
Organic field effect transistors
Molecules

Progesterone-Regulated Endometrial Factors Controlling Implantation

Bhurke, A. S., Bagchi, I. C. & Bagchi, M. K., Mar 1 2016, In : American Journal of Reproductive Immunology. 75, 3, p. 237-245 9 p.

Research output: Contribution to journalReview article

Progesterone Receptors
Progesterone
Protein Isoforms
Pregnancy
Critical Pathways

Promise of combined hydrothermal/chemical and mechanical refining for pretreatment of woody and herbaceous biomass

Kim, S. M., Dien, B. S. & Singh, V., Apr 30 2016, In : Biotechnology for Biofuels. 9, 1, 97.

Research output: Contribution to journalReview article

Biomass
Refining
Enzymes
Sugars
enzyme

Quantitative imaging of cell membrane-associated effective mass density using Photonic Crystal Enhanced Microscopy (PCEM)

Zhuo, Y., Choi, J. S., Marin, T., Yu, H., Harley, B. A. & Cunningham, B. T., Nov 1 2016, In : Progress in Quantum Electronics. 50, p. 1-18 18 p.

Research output: Contribution to journalReview article

Cell membranes
Photonic crystals
Microscopic examination
photonics
microscopy

Quantitative microbial risk assessment of waterborne pathogens: History and progress

Zhang, Z., Wang, J. & Zheng, X., Jan 6 2016, In : Huanjing Kexue Xuebao/Acta Scientiae Circumstantiae. 36, 1, p. 2-15 14 p.

Research output: Contribution to journalReview article

Pathogens
Risk assessment
risk assessment
pathogen
history