Research Output 1969 2020

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Review article
2016

Design and engineering of artificial oxygen-activating metalloenzymes

Nastri, F., Chino, M., Maglio, O., Bhagi-Damodaran, A., Lu, Y. & Lombardi, A., Sep 21 2016, In : Chemical Society Reviews. 45, 18, p. 5020-5054 35 p.

Research output: Contribution to journalReview article

Oxygen
Enzymes
Metals
Proteins

DISCOVERY of A STELLAR OVERDENSITY in ERIDANUS-PHOENIX in the DARK ENERGY SURVEY

Li, T. S., Balbinot, E., Mondrik, N., Marshall, J. L., Yanny, B., Bechtol, K., Drlica-Wagner, A., Oscar, D., Santiago, B., Simon, J. D., Vivas, A. K., Walker, A. R., Wang, M. Y., Abbott, T. M. C., Abdalla, F. B., Benoit-Lévy, A., Bernstein, G. M., Bertin, E., Brooks, D., Burke, D. L. & 40 others, Rosell, A. C., Kind, M. C., Carretero, J., Costa, L. N. D., Depoy, D. L., Desai, S., Diehl, H. T., Doel, P., Estrada, J., Finley, D. A., Flaugher, B., Frieman, J., Gruen, D., Gruendl, R. A., Gutierrez, G., Honscheid, K., James, D. J., Kuehn, K., Kuropatkin, N., Lahav, O., Maia, M. A. G., March, M., Martini, P., Ogando, R., Plazas, A. A., Reil, K., Romer, A. K., Roodman, A., Sanchez, E., Scarpine, V., Schubnell, M., Sevilla-Noarbe, I., Smith, R. C., Soares-Santos, M., Sobreira, F., Suchyta, E., Swanson, M. E. C., Tarle, G., Tucker, D. & Zhang, Y., Feb 1 2016, In : Astrophysical Journal. 817, 2, 135.

Research output: Contribution to journalReview article

Phoenix (AZ)
energy
dark energy
constellations
main sequence stars

Disentangling competence for genetic transformation and virulence in Streptococcus pneumoniae

Lin, J., Zhu, L. & Lau, G., Feb 1 2016, In : Current Genetics. 62, 1, p. 97-103 7 p.

Research output: Contribution to journalReview article

Genetic Transformation
Streptococcus pneumoniae
Regulon
Mental Competency
Virulence
aggregate exposure
Honey
Bees
agroecosystems
Pesticides
Reward
Adolescent Development
Corpus Striatum
Risk-Taking
Child Welfare

Droplet-based biosensing for lab-on-a-chip, open microfluidics platforms

Dak, P., Ebrahimi, A., Swaminathan, V., Duarte-Guevara, C., Bashir, R. & Alam, M. A., Jan 1 2016, In : Biosensors. 6, 2, 14.

Research output: Contribution to journalReview article

Lab-on-a-chip
Microfluidics
Biosensing Techniques
Biosensors
Costs and Cost Analysis

Drosophila Imaginal Discs as a Model of Epithelial Wound Repair and Regeneration

Smith-Bolton, R., Jun 2016, In : Advances in Wound Care. 5, 6, p. 251-261 11 p.

Research output: Contribution to journalReview article

Imaginal Discs
Drosophila
Regeneration
Epithelium
Wounds and Injuries
Smegmamorpha
Fathers
Mothers
Parents
Hormones

Electrical Chips for Biological Point-of-Care Detection

Reddy, B., Salm, E. & Bashir, R., Jul 11 2016, In : Annual Review of Biomedical Engineering. 18, p. 329-355 27 p.

Research output: Contribution to journalReview article

Point-of-Care Systems
Biochips
Lab-on-a-chip
Multiplexing
Health care

Emerging Biosensing Approaches for microRNA Analysis

Graybill, R. M. & Bailey, R. C., Jan 5 2016, In : Analytical chemistry. 88, 1, p. 431-450 20 p.

Research output: Contribution to journalReview article

MicroRNAs

Emerging link between Alzheimer's disease and homeostatic synaptic plasticity

Jang, S. S. & Chung, H. J., Jan 1 2016, In : Neural Plasticity. 2016, 7969272.

Research output: Contribution to journalReview article

Neuronal Plasticity
Alzheimer Disease
Neurofibrillary Tangles
Long-Term Potentiation
Amyloid Plaques

Emerging trends and opportunities in discrete-frequency infrared and Raman spectroscopic imaging

Wrobel, T. P., Kole, M. R. & Bhargava, R., Jun 2016, In : Spectroscopy (Santa Monica). 31, 6

Research output: Contribution to journalReview article

emerging
Microscopic examination
microscopy
Infrared radiation
trends

Energetic Carrying Capacity of Riverine and Connected Wetlands of the Upper Illinois River for Fall-Migrating Waterfowl

Vonbank, J. A., Hagy, H. M. & Casper, A. F., Oct 1 2016, In : American Midland Naturalist. 176, 2, p. 210-221 12 p.

Research output: Contribution to journalReview article

Illinois River
waterfowl
carrying capacity
wetlands
energetics

Engineering microbial hosts for production of bacterial natural products

Zhang, M. M., Wang, Y., Ang, E. L. & Zhao, H., Aug 2016, In : Natural Product Reports. 33, 8, p. 963-987 25 p.

Research output: Contribution to journalReview article

Biological Products
Genetic Engineering
Actinobacteria
Genomics
Genetic engineering

Engineering Synthetic Gene Circuits in Living Cells with CRISPR Technology

Jusiak, B., Cleto, S., Perez-Piñera, P. & Lu, T. K., Jul 1 2016, In : Trends in Biotechnology. 34, 7, p. 535-547 13 p.

Research output: Contribution to journalReview article

Clustered Regularly Interspaced Short Palindromic Repeats
Synthetic Genes
Gene Regulatory Networks
Genes
Cells

Enhancing reproducibility for computational methods

Stodden, V., McNutt, M., Bailey, D. H., Deelman, E., Gil, Y., Hanson, B., Heroux, M. A., Ioannidis, J. P. A. & Taufer, M., Dec 9 2016, In : Science. 354, 6317, p. 1240-1241 2 p.

Research output: Contribution to journalReview article

Evidence for bisphenol A-induced female infertility: a review (2007–2016)

Ziv-Gal, A. & Flaws, J. A., Sep 15 2016, In : Fertility and Sterility. 106, 4, p. 827-856 30 p.

Research output: Contribution to journalReview article

Female Infertility
Oviducts
Periodicity
Hypothalamus
Uterus

Exercise and gut immune function: Evidence of alterations in colon immune cell homeostasis and microbiome characteristics with exercise training

Cook, M. D., Allen, J. M., Pence, B. D., Wallig, M. A., Gaskins, H. R., White, B. A. & Woods, J. A., Feb 1 2016, In : Immunology and Cell Biology. 94, 2, p. 158-163 6 p.

Research output: Contribution to journalReview article

Microbiota
Colon
Homeostasis
Dysbiosis
Exercise

Experimental and Computational Mechanistic Studies Guiding the Rational Design of Molecular Electrocatalysts for Production and Oxidation of Hydrogen

Raugei, S., Helm, M. L., Hammes-Schiffer, S., Appel, A. M., O'Hagan, M., Wiedner, E. S. & Bullock, R. M., Jan 19 2016, In : Inorganic Chemistry. 55, 2, p. 445-460 16 p.

Research output: Contribution to journalReview article

electrocatalysts
Electrocatalysts
Protons
Hydrogen
Oxidation

Fluorescent nanoprobes for sensing and imaging of metal ions: Recent advances and future perspectives

Zhang, J. J., Cheng, F. F., Li, J. J., Zhu, J. J. & Lu, Y., Jun 1 2016, In : Nano Today. 11, 3, p. 309-329 21 p.

Research output: Contribution to journalReview article

Nanoprobes
Nanostructures
Nanostructured materials
Metal ions
Quantum Dots

Fossil Megaloptera (Insecta: Neuropterida) from the Lower Cretaceous Crato Formation of Brazil

Jepson, J. E. & Heads, S. W., Apr 5 2016, In : Zootaxa. 4098, 1, p. 134-144 11 p.

Research output: Contribution to journalReview article

Megaloptera
Insecta
fossils
fossil
Cretaceous

Framework for the assessment of interaction between CO2 geological storage and other sedimentary basin resources

Michael, K., Whittaker, S., Varma, S., Bekele, E., Langhi, L., Hodgkinson, J. & Harris, B., Feb 2016, In : Environmental Science: Processes and Impacts. 18, 2, p. 164-175 12 p.

Research output: Contribution to journalReview article

Carbon Dioxide
sedimentary basin
carbon dioxide
resource
plume

Freshwater biota and rising pCO2?

Hasler, C. T., Butman, D., Jeffrey, J. D. & Suski, C. D., Jan 1 2016, In : Ecology Letters. 19, 1, p. 98-108 11 p.

Research output: Contribution to journalReview article

biota
carbon dioxide
organisms
plankton
climate change

Has photosynthetic capacity increased with 80years of soybean breeding? An examination of historical soybean cultivars

Koester, R. P., Nohl, B. M., Diers, B. W. & Ainsworth, E., May 1 2016, In : Plant Cell and Environment. 39, 5, p. 1058-1067 10 p.

Research output: Contribution to journalReview article

Soybeans
Breeding
Biomass
soybeans
breeding

High-resolution, hybrid optical trapping methods, and their application to nucleic acid processing proteins

Chemla, Y. R., Oct 1 2016, In : Biopolymers. p. 704-714 11 p.

Research output: Contribution to journalReview article

Optical Tweezers
Nucleic acids
Nucleic Acids
Proteins
Processing

Hydrogenase Enzymes and Their Synthetic Models: The Role of Metal Hydrides

Schilter, D., Camara, J. M., Huynh, M. T., Hammes-Schiffer, S. & Rauchfuss, T. B., Aug 10 2016, In : Chemical reviews. 116, 15, p. 8693-8749 57 p.

Research output: Contribution to journalReview article

Hydrogenase
Hydrides
Metals
Enzymes
Bearings (structural)

Image science at JOSA A: Editorial

Carney, P. S., Oct 2016, In : Journal of the Optical Society of America A: Optics and Image Science, and Vision. 33, 10, p. ED8

Research output: Contribution to journalReview article

Impact of early gut microbiota on immune and metabolic development and function

Wang, M., Siegel, M. H. & Donovan, S. M., Dec 1 2016, In : Seminars in Fetal and Neonatal Medicine. 21, 6, p. 380-387 8 p.

Research output: Contribution to journalReview article

Prebiotics
Microbiota
Metabolic Diseases
Immune System Diseases
Probiotics

Implementing design sprints in the education of industrial designers

Thomas, J. & Shin, S. S., Jan 1 2016, In : Design Principles and Practices. 10, 1, p. 59-73 15 p.

Research output: Contribution to journalReview article

Industrial Designer
Education
Prototype
Industrial Design
Fidelity

Influence of exercise and aging on extracellular matrix composition in the skeletal muscle stem cell niche

Garg, K. & Boppart, M. D., Nov 2016, In : Journal of Applied Physiology. 121, 5, p. 1053-1058 6 p.

Research output: Contribution to journalReview article

Stem Cell Niche
Muscle Cells
Extracellular Matrix
Skeletal Muscle
Stem Cells

Innovations in canine and feline nutrition: Technologies for food and nutrition assessment

De Godoy, M. R. C., Hervera, M., Swanson, K. S. & Fahey, G. C., Feb 15 2016, In : Annual Review of Animal Biosciences. 4, p. 311-333 23 p.

Research output: Contribution to journalReview article

Biomedical Technology Assessment
Nutrition Assessment
nutrition assessment
Pets
Felidae

Insect phylogenetics in the digital age

Dietrich, C. H. & Dmitriev, D. A., Dec 1 2016, In : Current Opinion in Insect Science. 18, p. 48-52 5 p.

Research output: Contribution to journalReview article

insect
phylogenetics
insects
phylogeny
data management

Intratumoral Heterogeneity of the Epigenome

Mazor, T., Pankov, A., Song, J. S. & Costello, J. F., Apr 11 2016, In : Cancer Cell. 29, 4, p. 440-451 12 p.

Research output: Contribution to journalReview article

Epigenomics
Genetic Heterogeneity
Drug Resistance
Neoplasms

Judicious use of prophylactic antimicrobials to reduce abdominal surgical site infections in periparturient cows: Part 1-a risk factor review

Dumas, S. E., French, H. M., Lavergne, S. N., Ramirez, C. R., Brown, L. J., Bromfield, C. R., Garrett, E. F., French, D. D. & Aldridge, B. M., Jun 25 2016, In : Veterinary Record. 178, 26, p. 654-660 7 p.

Research output: Contribution to journalReview article

Surgical Wound Infection
Livestock
risk factors
anti-infective agents
cows

Magnetomotive Optical Coherence Elastography for Magnetic Hyperthermia Dosimetry Based on Dynamic Tissue Biomechanics

Huang, P. C., Pande, P., Ahmad, A., Marjanovic, M., Spillman, D. R., Odintsov, B. & Boppart, S. A., Jul 2016, In : IEEE Journal of Selected Topics in Quantum Electronics. 22, 4, 7355327.

Research output: Contribution to journalReview article

biodynamics
Biomechanics
hyperthermia
Dosimetry
dosimeters

Manipulating photorespiration to increase plant productivity: Recent advances and perspectives for crop improvement

Betti, M., Bauwe, H., Busch, F. A., Fernie, A. R., Keech, O., Levey, M., Ort, D. R., Parry, M. A. J., Sage, R., Timm, S., Walker, B. & Weber, A. P. M., May 1 2016, In : Journal of experimental botany. 67, 10, p. 2977-2988 12 p.

Research output: Contribution to journalReview article

photorespiration
engineering
Ribulose-Bisphosphate Carboxylase
Oxygenases
Genetic Engineering

Medical diagnostics with mobile devices: Comparison of intrinsic and extrinsic sensing

Kwon, L., Long, K. D., Wan, Y., Yu, H. & Cunningham, B. T., May 1 2016, In : Biotechnology Advances. 34, 3, p. 291-304 14 p.

Research output: Contribution to journalReview article

Point-of-Care Systems
Handheld Computers
Precision Medicine
Mobile devices
Equipment and Supplies

Methods of conducting effective outreach to private well owners - A literature review and model approach

Morris, L., Wilson, S. & Kelly, W., Apr 2016, In : Journal of Water and Health. 14, 2, p. 167-182 16 p.

Research output: Contribution to journalReview article

Risk-Taking
literature review
Practice Guidelines
Communication
well

Microsporidia – Emergent Pathogens in the Global Food Chain

Stentiford, G. D., Becnel, J. J., Weiss, L. M., Keeling, P. J., Didier, E. S., Williams, B. A. P., Bjornson, S., Kent, M. L., Freeman, M. A., Brown, M. J. F., Troemel, E. R., Roesel, K., Sokolova, Y., Snowden, K. F. & Solter, L., Apr 1 2016, In : Trends in Parasitology. 32, 4, p. 336-348 13 p.

Research output: Contribution to journalReview article

Microsporidia
Food Chain
Microsporidiosis
Parasites
Edible Plants

Mitigating health risks associated with alcoholic beverages through metabolic engineering

Jayakody, L. N., Lane, S., Kim, H. & Jin, Y-S., Feb 1 2016, In : Current Opinion in Biotechnology. 37, p. 173-181 9 p.

Research output: Contribution to journalReview article

Metabolic engineering
Metabolic Engineering
Alcoholic Beverages
Health risks
Yeast

Modelling of bone fracture and strength at different length scales: A review

Sabet, F. A., Najafi, A. R., Hamed, E. & Jasiuk, I., Feb 6 2016, In : Interface Focus. 6, 1, 20150055.

Research output: Contribution to journalReview article

Bone Fractures
Bone
Bone and Bones
Bone Diseases
Osteoporosis

Models of the Ni-L and Ni-SIa States of the [NiFe]-Hydrogenase Active Site

Chambers, G. M., Huynh, M. T., Li, Y., Hammes-Schiffer, S., Rauchfuss, T. B., Reijerse, E. & Lubitz, W., Jan 19 2016, In : Inorganic Chemistry. 55, 2, p. 419-431 13 p.

Research output: Contribution to journalReview article

Carbon Monoxide
enzymes
isomers
Isomers
density functional theory

Molecular basis for resistance against phosphonate antibiotics and herbicides

Chekan, J. R., Cogan, D. P. & Nair, S. K., Jan 1 2016, In : MedChemComm. 7, 1, p. 28-36 9 p.

Research output: Contribution to journalReview article

glyphosate
Fosfomycin
Organophosphonates
Herbicides
Bioactivity

Molluscan models: Crepidula fornicata

Henry, J. Q. & Lyons, D. C., Aug 1 2016, In : Current Opinion in Genetics and Development. 39, p. 138-148 11 p.

Research output: Contribution to journalReview article

Snails
Clustered Regularly Interspaced Short Palindromic Repeats
Introduced Species
Gastrulation
Gastropoda

NanoEHS - Defining fundamental science needs: No easy feat when the simple itself is complex

Grassian, V. H., Haes, A. J., Mudunkotuwa, I. A., Demokritou, P., Kane, A. B., Murphy, C. J., Hutchison, J. E., Isaacs, J. A., Jun, Y. S., Karn, B., Khondaker, S. I., Larsen, S. C., Lau, B. L. T., Pettibone, J. M., Sadik, O. A., Saleh, N. B. & Teague, C., Feb 1 2016, In : Environmental Science: Nano. 3, 1, p. 15-27 13 p.

Research output: Contribution to journalReview article

nanotechnology
Nanostructured materials
Nanotechnology
catalysis
information technology

Naturally derived biomaterials for addressing inflammation in tissue regeneration

Hortensius, R. A. & Harley, B. A. C., Jan 1 2016, In : Experimental Biology and Medicine. 241, 10, p. 1015-1024 10 p.

Research output: Contribution to journalReview article

Tissue regeneration
Biocompatible Materials
Regeneration
Inflammation
Extracellular Matrix

Nest Predators of North American Birds: Continental Patterns and Implications

DeGregorio, B. A., Chiavacci, S. J., Benson, T. J., Sperry, J. H. & Weatherhead, P. J., Aug 1 2016, In : BioScience. 66, 8, p. 655-665 11 p.

Research output: Contribution to journalReview article

Birds
Ecosystem
nests
predators
birds

Neural networks of tinnitus in humans: Elucidating severity and habituation

Husain, F. T., Apr 1 2016, In : Hearing Research. 334, p. 37-48 12 p.

Research output: Contribution to journalReview article

Tinnitus
Magnetic Resonance Imaging
Emotions
Hearing Disorders
Parahippocampal Gyrus

New Insights into the Biosynthetic Logic of Ribosomally Synthesized and Post-translationally Modified Peptide Natural Products

Ortega, M. A. & van der Donk, W. A., Jan 21 2016, In : Cell chemical biology. 23, 1, p. 31-44 14 p.

Research output: Contribution to journalReview article

Biosynthesis
Biological Products
Synthetic Biology
Peptides
Biosynthetic Pathways

Nuclear and extranuclear-initiated estrogen receptor signaling crosstalk and endocrine resistance in breast cancer

Kulkoyluoglu, E. & Madak-Erdogan, Z., Jan 1 2016, In : Steroids. 114, p. 41-47 7 p.

Research output: Contribution to journalReview article

Estrogen Receptor alpha
Crosstalk
Estrogen Receptors
Breast Neoplasms
Estrogen Receptor beta