Research Output 1967 2020

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Review article
2017

Ribosomally synthesized and post-translationally modified peptide natural product discovery in the genomic era

Hetrick, K. J. & van der Donk, W. A., Jun 1 2017, In : Current Opinion in Chemical Biology. 38, p. 36-44 9 p.

Research output: Contribution to journalReview article

Biological Products
Genes
Genome
Bacterial Genomes
Peptides

RNA modifications and structures cooperate to guide RNA-protein interactions

Lewis, C. J. T., Pan, T. & Kalsotra, A., Mar 1 2017, In : Nature Reviews Molecular Cell Biology. 18, 3, p. 202-210 9 p.

Research output: Contribution to journalReview article

Guide RNA
RNA
Proteins
Transcriptome
Gene Expression

Rooting for cassava: insights into photosynthesis and associated physiology as a route to improve yield potential

De Souza, A. P., Massenburg, L. N., Jaiswal, D., Cheng, S., Shekar, R. & Long, S. P., Jan 1 2017, In : New Phytologist. 213, 1, p. 50-65 16 p.

Research output: Contribution to journalReview article

Manihot
Photosynthesis
cassava
rooting
physiology

Safe Landing Strategies During a Fall: Systematic Review and Meta-Analysis

Moon, Y. & Sosnoff, J. J., Apr 1 2017, In : Archives of Physical Medicine and Rehabilitation. 98, 4, p. 783-794 12 p.

Research output: Contribution to journalReview article

Accidental Falls
Martial Arts
Meta-Analysis
Elbow
Information Storage and Retrieval

Serration and noise behaviors in materials

Zhang, Y., Liu, J. P., Chen, S. Y., Xie, X., Liaw, P. K., Dahmen, K. A., Qiao, J. W. & Wang, Y. L., Oct 2017, In : Progress in Materials Science. 90, p. 358-460 103 p.

Research output: Contribution to journalReview article

Functional materials
Steel
Metallic glass
Stress-strain curves
Plasticity

Soft nanostructured films for directing the assembly of functional materials

Steer, D., Kang, M. & Leal, C., Mar 8 2017, In : Nanotechnology. 28, 14, 142001.

Research output: Contribution to journalReview article

Functional materials
Lipids
Biophysics
Thin films
Nucleic acids

Some Phoretic Associations of Macroinvertebrates on Transplanted Federally Endangered Freshwater Mussels

Robinson, J. L., Wetzel, M. J. & Tiemann, J. S., Dec 2017, In : Northeastern Naturalist. 24, 4, p. N29-N34

Research output: Contribution to journalReview article

caddisfly
Trichoptera
macroinvertebrates
macroinvertebrate
mussels

Spatial updating and common misinterpretations of spatial reference frames

Wang, R. F., Jul 3 2017, In : Spatial Cognition and Computation. 17, 3, p. 222-249 28 p.

Research output: Contribution to journalReview article

Updating
Paradigm
Research
Spatial Analysis
Task Performance and Analysis

State barriers to approval of drinking water technologies for small systems

Ringenberg, D. T., Wilson, S. D. & Dvorak, B. I., Aug 2017, In : Journal - American Water Works Association. 109, 8, p. E343-E352

Research output: Contribution to journalReview article

water technology
Drinking Water
drinking water
certification
new technology

Synthetic polypeptides: From polymer design to supramolecular assembly and biomedical application

Song, Z., Han, Z., Lv, S., Chen, C., Chen, L., Yin, L. & Cheng, J., Nov 7 2017, In : Chemical Society Reviews. 46, 21, p. 6570-6599 30 p.

Research output: Contribution to journalReview article

Polymers
Peptides
Hydrogels
Ring opening polymerization
Micelles

Targeting Specificity of the CRISPR/Cas9 System

Tasan, I. & Zhao, H., Sep 15 2017, In : ACS synthetic biology. 6, 9, p. 1609-1613 5 p.

Research output: Contribution to journalReview article

Clustered Regularly Interspaced Short Palindromic Repeats
Genes
Mutagenesis
Target tracking
Standardization

The 4D nucleome project

4D Nucleome Network, Sep 13 2017, In : Nature. 549, 7671, p. 219-226 8 p.

Research output: Contribution to journalReview article

Genome
Benchmarking
Human Genome
Technology
Population

The biology of color

Cuthill, I. C., Allen, W. L., Arbuckle, K., Caspers, B., Chaplin, G., Hauber, M. E., Hill, G. E., Jablonski, N. G., Jiggins, C. D., Kelber, A., Mappes, J., Marshall, J., Merrill, R., Osorio, D., Prum, R., Roberts, N. W., Roulin, A., Rowland, H. M., Sherratt, T. N., Skelhorn, J. & 7 others, Speed, M. P., Stevens, M., Stoddard, M. C., Stuart-Fox, D., Talas, L., Tibbetts, E. & Caro, T., Aug 4 2017, In : Science. 357, 6350, eaan0221.

Research output: Contribution to journalReview article

Body Temperature Regulation
Ultraviolet Rays
Color

The Emerald Acropolis: Elevating the moon and water in the rise of Cahokia

Pauketat, T. R., Alt, S. M. & Kruchten, J. D., Feb 1 2017, In : Antiquity. 91, 355, p. 207-222 16 p.

Research output: Contribution to journalReview article

eleventh century
water
layout
religious behavior
evidence

The informal guide to ACM fellow nominations: Recommendations for a successful nomination process

Snir, M., Jul 2017, In : Communications of the ACM. 60, 7, p. 32-34 3 p.

Research output: Contribution to journalReview article

The "ok, molly" chemistry

Lu, Y., Jan 1 2017, In : Accounts of chemical research. 50, 3, p. 647-651 5 p.

Research output: Contribution to journalReview article

Education

The role of early life nutrition in the establishment of gastrointestinal microbial composition and function

Davis, E. C., Wang, M. & Donovan, S. M., Mar 4 2017, In : Gut Microbes. 8, 2, p. 143-171 29 p.

Research output: Contribution to journalReview article

Dysbiosis
Prebiotics
Infant Formula
Microbiota
Probiotics

The ultrastructure of bone and its relevance to mechanical properties

Schwarcz, H. P., Abueidda, D. & Jasiuk, I., Sep 5 2017, In : Frontiers in Physics. 5, SEP, 39.

Research output: Contribution to journalReview article

Ultrastructure
Bone
bones
Mechanical Properties
Minerals

Tuning the Ultrafast Dynamics of Photoinduced Proton-Coupled Electron Transfer in Energy Conversion Processes

Goyal, P. & Hammes-Schiffer, S., Feb 10 2017, In : ACS Energy Letters. 2, 2, p. 512-519 8 p.

Research output: Contribution to journalReview article

Energy conversion
Protons
Tuning
Electrons
Photoelectrochemical cells

Unraveling atomic-level self-organization at the plasma-material interface

Allain, J. P. & Shetty, A., Jun 28 2017, In : Journal of Physics D: Applied Physics. 50, 28, 283002.

Research output: Contribution to journalReview article

Plasmas
Irradiation
Beam plasma interactions
irradiation
Surface treatment

Use of Pig as a Model for Mesenchymal Stem Cell Therapies for Bone Regeneration

Rubessa, M., Polkoff, K., Bionaz, M., Monaco, E., Milner, D. J., Holllister, S. J., Goldwasser, M. S. & Wheeler, M. B., Oct 2 2017, In : Animal Biotechnology. 28, 4, p. 275-287 13 p.

Research output: Contribution to journalReview article

Bone Regeneration
Cell- and Tissue-Based Therapy
Stem cells
Mesenchymal Stromal Cells
stem cells

Using natural products for drug discovery: the impact of the genomics era

Zhang, M. M., Qiao, Y., Ang, E. L. & Zhao, H., May 4 2017, In : Expert Opinion on Drug Discovery. 12, 5, p. 475-487 13 p.

Research output: Contribution to journalReview article

Drug Discovery
Genomics
Biological Products
Synthetic Biology
Metagenomics

Virtual Issue on Metal-Halide Perovskite Nanocrystals - A Bright Future for Optoelectronics

Buriak, J. M., Kamat, P. V., Schanze, K. S., Alivisatos, A. P., Murphy, C. J., Schatz, G. C., Scholes, G. D., Stang, P. J. & Weiss, P. S., Nov 14 2017, In : Chemistry of Materials. 29, 21, p. 8915-8917 3 p.

Research output: Contribution to journalReview article

Metal halides
Optoelectronic devices
Nanocrystals
perovskite

What can machine learning do for antimicrobial peptides, and what can antimicrobial peptides do for machine learning?

Lee, E. Y., Lee, M. W., Fulan, B. M., Ferguson, A. L. & Wong, G. C. L., Dec 6 2017, In : Interface Focus. 7, 6, 20160153.

Research output: Contribution to journalReview article

Peptides
Learning systems
Membranes
Machine Learning
Taxonomies

Why experiment with success? Opportunities and risks in applying assessment and adaptive management to the Emiquon floodplain restoration project

Sparks, R. E., Douglas Blodgett, K., Casper, A. F., Hagy, H., Lemke, M. J., Velho, L. F. M. & Rodrigues, L. C., Dec 1 2017, In : Hydrobiologia. 804, 1, p. 177-200 24 p.

Research output: Contribution to journalReview article

adaptive management
floodplains
risk assessment
floodplain
planning process

YcaO-Dependent Posttranslational Amide Activation: Biosynthesis, Structure, and Function

Burkhart, B. J., Schwalen, C. J., Mann, G., Naismith, J. H. & Mitchell, D. A., Apr 26 2017, In : Chemical reviews. 117, 8, p. 5389-5456 68 p.

Research output: Contribution to journalReview article

Biosynthesis
Amides
Chemical activation
Nucleophiles
Proteins
2016

A brief overview of synthetic biology research programs and roadmap studies in the United States

Si, T. & Zhao, H., Dec 1 2016, In : Synthetic and Systems Biotechnology. 1, 4, p. 258-264 7 p.

Research output: Contribution to journalReview article

Synthetic Biology
Research
Government Agencies
Biological systems

Accelerated genome engineering through multiplexing

Bao, Z., Cobb, R. E. & Zhao, H., Jan 1 2016, In : Wiley Interdisciplinary Reviews: Systems Biology and Medicine. 8, 1, p. 5-21 17 p.

Research output: Contribution to journalReview article

Multiplexing
Genes
Genome
Bioengineering
Biological Science Disciplines

A comprehensive empirical study of data privacy, trust, and consumer autonomy

Kesan, J. P., Hayes, C. M. & Bashir, M. N., Jan 1 2016, In : Indiana Law Journal. 91, 2, p. 267-352 86 p.

Research output: Contribution to journalReview article

privacy
autonomy
privacy law
private sector
data storage

ACS Catalysis and the Scope of Papers Sought in Three Catalysis Subdisciplines: Biocatalysis and Enzymology, Molecular Catalysis for Organic Synthesis, and Heterogeneous Photocatalysis

Chang, S., Fornasiero, P., Gunnoe, T. B., Jones, C. W., Linic, S., Ooi, T., Williams, R. M. & Zhao, H., Jul 1 2016, In : ACS Catalysis. 6, 7, p. 4782-4785 4 p.

Research output: Contribution to journalReview article

Photocatalysis
Catalysis
Biocatalysis

Adoptive T Cell Therapies: A Comparison of T Cell Receptors and Chimeric Antigen Receptors

Harris, D. T. & Kranz, D. M., Mar 1 2016, In : Trends in Pharmacological Sciences. 37, 3, p. 220-230 11 p.

Research output: Contribution to journalReview article

Antigen Receptors
T-cells
Cell- and Tissue-Based Therapy
T-Cell Antigen Receptor
T-Lymphocytes
Transcriptome
Lenses
RNA
Polyadenylation
Data handling

Analytical capabilities of mass spectrometry imaging and its potential applications in food science

Li, B., Dunham, S. J. B., Dong, Y., Yoon, S., Zeng, M. & Sweedler, J. V., Jan 1 2016, In : Trends in Food Science and Technology. 47, p. 50-63 14 p.

Research output: Contribution to journalReview article

Food Technology
food science
Mass Spectrometry
image analysis
mass spectrometry

A perspective on 16S rRNA operational taxonomic unit clustering using sequence similarity

Nguyen, N. P., Warnow, T., Pop, M. & White, B., Apr 20 2016, In : npj Biofilms and Microbiomes. 2, 16004.

Research output: Contribution to journalReview article

Cluster Analysis
Sequence Alignment
Microbiota

A review of snapshot multidimensional optical imaging: Measuring photon tags in parallel

Gao, L. & Wang, L. V., Feb 29 2016, In : Physics Reports. 616, p. 1-37 37 p.

Research output: Contribution to journalReview article

acquisition
photons
scanning
photography
image reconstruction

Arguments Reinforcing the Three-Domain View of Diversified Cellular Life

Nasir, A., Kim, K. M., Da Cunha, V. & Caetano-Anollés, G., Jan 1 2016, In : Archaea. 2016, 1851865.

Research output: Contribution to journalReview article

Eukaryota
ancestry
Phylogeny
eukaryote
domain structure

Asian Carp in the Diet of River Otters in Illinois

Feltrop, P. D., Nielsen, C. K. & Schauber, E. M., Oct 1 2016, In : American Midland Naturalist. 176, 2, p. 298-305 8 p.

Research output: Contribution to journalReview article

Lontra canadensis
crayfish
carp
otolith
amphibian

Biochemical and biophysical understanding of metal ion selectivity of DNAzymes

Hwang, K., Hosseinzadeh, P. & Lu, Y., Jan 1 2016, In : Inorganica Chimica Acta. 452, p. 12-24 13 p.

Research output: Contribution to journalReview article

Catalytic DNA
Metal ions
Structural properties
metal ions
selectivity

Brain Networks and α-Oscillations: Structural and Functional Foundations of Cognitive Control

Friberg, S. S. & Kleinschmidt, A., Nov 1 2016, In : Trends in Cognitive Sciences. 20, 11, p. 805-817 13 p.

Research output: Contribution to journalReview article

Brain
Automatic Data Processing
Power (Psychology)

Building a cognitive map by assembling multiple path integration systems

Wang, R. F., Jun 1 2016, In : Psychonomic Bulletin and Review. 23, 3, p. 692-702 11 p.

Research output: Contribution to journalReview article

Systems Integration
Cognitive Map
Navigation
Cambarus
Cambaridae
crayfish
Decapoda
new species

Cameo appearances of aminoacyl-tRNA in natural product biosynthesis

Ulrich, E. C. & van der Donk, W. A., Dec 1 2016, In : Current Opinion in Chemical Biology. 35, p. 29-36 8 p.

Research output: Contribution to journalReview article

Biosynthesis
Transfer RNA
Biological Products
Genes
Enzymes

Challenges and Opportunities to Harnessing the (Hematopoietic) Stem Cell Niche

Choi, J. S. & Harley, B. A. C., Mar 1 2016, In : Current Stem Cell Reports. 2, 1, p. 85-94 10 p.

Research output: Contribution to journalReview article

Stem Cell Niche
Hematopoietic Stem Cells
Stem Cells
Extracellular Matrix
Adult Stem Cells

Challenges in Data Crowdsourcing

Garcia-Molina, H., Joglekar, M., Marcus, A., Parameswaran, A. G. & Verroios, V., Apr 1 2016, In : IEEE Transactions on Knowledge and Data Engineering. 28, 4, p. 901-911 11 p., 7384520.

Research output: Contribution to journalReview article

Data acquisition
Crowdsourcing

Childhood Markers of Health Behavior Relate to Hippocampal Health, Memory, and Academic Performance

Hassevoort, K. M., Khan, N. A., Hillman, C. H. & Cohen, N. J., Sep 1 2016, In : Mind, Brain, and Education. 10, 3, p. 162-170 9 p.

Research output: Contribution to journalReview article

Health Behavior
health behavior
Life Style
brain
childhood

Cognitive Phenotypes and the Evolution of Animal Decisions

Mendelson, T. C., Fitzpatrick, C. L., Hauber, M. E., Pence, C. H., Rodríguez, R. L., Safran, R. J., Stern, C. A. & Stevens, J. R., Nov 1 2016, In : Trends in Ecology and Evolution. 31, 11, p. 850-859 10 p.

Research output: Contribution to journalReview article

phenotype
decision making
psychology
animal
animals
Desalination
Intercalation
intercalation
Ions
membranes

Consequences of bile salt biotransformations by intestinal bacteria

Ridlon, J. M., Harris, S. C., Bhowmik, S., Kang, D. J. & Hylemon, P. B., Jan 2 2016, In : Gut Microbes. 7, 1, p. 22-39 18 p.

Research output: Contribution to journalReview article

Biotransformation
Bile Acids and Salts
Bacteria
Gallbladder Diseases
Food

Considerations of Environmentally Relevant Test Conditions for Improved Evaluation of Ecological Hazards of Engineered Nanomaterials

Holden, P. A., Gardea-Torresdey, J. L., Klaessig, F., Turco, R. F., Mortimer, M., Hund-Rinke, K., Cohen Hubal, E. A., Avery, D., Barceló, D., Behra, R., Cohen, Y., Deydier-Stephan, L., Ferguson, P. L., Fernandes, T. F., Herr Harthorn, B., Henderson, W. M., Hoke, R. A., Hristozov, D., Johnston, J. M., Kane, A. B. & 20 others, Kapustka, L., Keller, A. A., Lenihan, H. S., Lovell, W., Murphy, C. J., Nisbet, R. M., Petersen, E. J., Salinas, E. R., Scheringer, M., Sharma, M., Speed, D. E., Sultan, Y., Westerhoff, P., White, J. C., Wiesner, M. R., Wong, E. M., Xing, B., Steele Horan, M., Godwin, H. A. & Nel, A. E., Jun 21 2016, In : Environmental Science and Technology. 50, 12, p. 6124-6145 22 p.

Research output: Contribution to journalReview article

Nanostructured materials
Hazards
hazard
ecotoxicology
hazard assessment

Contact-facilitated drug delivery with Sn2 lipase labile prodrugs optimize targeted lipid nanoparticle drug delivery

Pan, D., Pham, C. T. N., Weilbaecher, K. N., Tomasson, M. H., Wickline, S. A. & Lanza, G. M., Jan 1 2016, In : Wiley Interdisciplinary Reviews: Nanomedicine and Nanobiotechnology. 8, 1, p. 85-106 22 p.

Research output: Contribution to journalReview article

Medical nanotechnology
Phospholipids
Prodrugs
Lipases
Lipase