Research Output 1968 2020

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Review article
2018

Evolution of macromolecular structure: a 'double tale' of biological accretion and diversification

Caetano-Anollés, D., Caetano-Anollés, K. & Caetano-Anolles, G., Oct 1 2018, In : Science progress. 101, 4, p. 360-383 24 p.

Research output: Contribution to journalReview article

Genomics
Nucleic Acids
Growth
Proteins
Biocatalysis
Enzymes
Synthetic Biology
Metabolic engineering
Metabolic Engineering

Extreme Variability Quasars from the Sloan Digital Sky Survey and the Dark Energy Survey

Rumbaugh, N., Shen, Y., Morganson, E., Liu, X., Banerji, M., McMahon, R. G., Abdalla, F. B., Benoit-Lévy, A., Bertin, E., Brooks, D., Buckley-Geer, E., Capozzi, D., Carnero Rosell, A., Carrasco Kind, M., Carretero, J., Cunha, C. E., D'Andrea, C. B., Da Costa, L. N., Depoy, D. L., Desai, S. & 32 others, Doel, P., Frieman, J., García-Bellido, J., Gruen, D., Gruendl, R. A., Gschwend, J., Gutierrez, G., Honscheid, K., James, D. J., Kuehn, K., Kuhlmann, S., Kuropatkin, N., Lima, M., Maia, M. A. G., Marshall, J. L., Martini, P., Menanteau, F., Plazas, A. A., Reil, K., Roodman, A., Sanchez, E., Scarpine, V., Schindler, R., Schubnell, M., Sheldon, E., Smith, M., Soares-Santos, M., Sobreira, F., Suchyta, E., Swanson, M. E. C., Walker, A. R. & Wester, W., Feb 20 2018, In : Astrophysical Journal. 854, 2, 160.

Research output: Contribution to journalReview article

dark energy
quasars
accretion
timescale
erg

Falls among wheelchair and scooter users with multiple sclerosis—A review

Rice, L. A., Abou, L., Denend, T. V., Peterson, E. W. & Sosnoff, J. J., Sep 1 2018, In : European Neurological Review. 14, 2, p. 82-87 6 p.

Research output: Contribution to journalReview article

Open Access
Authorship
Wheelchairs
Peer Review
Disclosure
Licensure

Fatigue behavior of high-entropy alloys: A review

Chen, P. Y., Lee, C., Wang, S. Y., Seifi, M., Lewandowski, J. J., Dahmen, K. A., Jia, H. L., Xie, X., Chen, B. L., Yeh, J. W., Tsai, C. W., Yuan, T. & Liaw, P. K., Feb 1 2018, In : Science China Technological Sciences. 61, 2, p. 168-178 11 p.

Research output: Contribution to journalReview article

Entropy
Fatigue of materials
Fatigue crack propagation
Bending (deformation)
Solid solutions

Flash droughts: A review and assessment of the challenges imposed by rapid-onset droughts in the United States

Otkin, J. A., Svoboda, M., Hunt, E. D., Ford, T. W., Anderson, M. C., Hain, C. & Basara, J. B., May 2018, In : Bulletin of the American Meteorological Society. 99, 5, p. 911-919 9 p.

Research output: Contribution to journalReview article

drought
forecasting method
timescale
ecosystem
climate

Four new species of tribe Coelidiini (Hemiptera: Cicadellidae: Coelidiinae) from the Afrotropical Region

Wang, X. D., Dietrich, C. H. & Zhang, Y. L., May 1 2018, In : Zootaxa. 4415, 3, p. 591-600 10 p.

Research output: Contribution to journalReview article

Afrotropical Region
Cicadellidae
Hemiptera
new species
Republic of the Congo

Genetic accommodation and the role of ancestral plasticity in the evolution of insect eusociality

Jones, B. M. & Robinson, G. E., Dec 2018, In : Journal of Experimental Biology. 221, 23, jeb153163.

Research output: Contribution to journalReview article

eusociality
plasticity
Insects
insect
Phenotype

Genomic Approaches to Posttraumatic Stress Disorder: The Psychiatric Genomic Consortium Initiative

Nievergelt, C. M., Ashley-Koch, A. E., Dalvie, S., Hauser, M. A., Morey, R. A., Smith, A. K. & Uddin, E. M., May 15 2018, In : Biological Psychiatry. 83, 10, p. 831-839 9 p.

Research output: Contribution to journalReview article

Post-Traumatic Stress Disorders
Psychiatry
Genome-Wide Association Study
Genomics
Physiological Sexual Dysfunctions

Genomic tools for behavioural ecologists to understand repeatable individual differences in behaviour

Bengston, S. E., Dahan, R. A., Donaldson, Z., Phelps, S. M., Van Oers, K., Sih, A. & Bell, A. M., Jun 1 2018, In : Nature Ecology and Evolution. 2, 6, p. 944-955 12 p.

Research output: Contribution to journalReview article

ecologists
genomics
animal
animals
individual variation

Host defences against avian brood parasitism: An endocrine perspective

Abolins-Abols, M. & Hauber, M. E., Sep 12 2018, In : Proceedings of the Royal Society B: Biological Sciences. 285, 1886, 20180980.

Research output: Contribution to journalReview article

brood parasitism
Antiparasitic Agents
Parasites
arms race
parasite

How does solvation in the cell affect protein folding and binding?

Davis, C. M., Gruebele, M. & Sukenik, S., Feb 2018, In : Current Opinion in Structural Biology. 48, p. 23-29 7 p.

Research output: Contribution to journalReview article

Protein Folding
Protein Binding
Proteins
Membrane Proteins

How many human proteoforms are there?

Aebersold, R., Agar, J. N., Amster, I. J., Baker, M. S., Bertozzi, C. R., Boja, E. S., Costello, C. E., Cravatt, B. F., Fenselau, C., Garcia, B. A., Ge, Y., Gunawardena, J., Hendrickson, R. C., Hergenrother, P., Huber, C. G., Ivanov, A. R., Jensen, O. N., Jewett, M. C., Kelleher, N. L., Kiessling, L. L. & 33 others, Krogan, N. J., Larsen, M. R., Loo, J. A., Ogorzalek Loo, R. R., Lundberg, E., Maccoss, M. J., Mallick, P., Mootha, V. K., Mrksich, M., Muir, T. W., Patrie, S. M., Pesavento, J. J., Pitteri, S. J., Rodriguez, H., Saghatelian, A., Sandoval, W., Schlüter, H., Sechi, S., Slavoff, S. A., Smith, L. M., Snyder, M. P., Thomas, P. M., Uhlén, M., Van Eyk, J. E., Vidal, M., Walt, D. R., White, F. M., Williams, E. R., Wohlschlager, T., Wysocki, V. H., Yates, N. A., Young, N. L. & Zhang, B., Feb 14 2018, In : Nature chemical biology. 14, 3, p. 206-214 9 p.

Research output: Contribution to journalReview article

Post Translational Protein Processing
Proteins
Proteome
Proteomics
Amino Acid Sequence

How We Remember Conversation: Implications in Legal Settings

Brown-Schmidt, S. & Benjamin, A. S., Oct 1 2018, In : Policy Insights from the Behavioral and Brain Sciences. 5, 2, p. 187-194 8 p.

Research output: Contribution to journalReview article

conversation
trend
evidence

Innovations in CRISPR technology

Brooks, A. K. & Gaj, T., Aug 2018, In : Current Opinion in Biotechnology. 52, p. 95-101 7 p.

Research output: Contribution to journalReview article

Clustered Regularly Interspaced Short Palindromic Repeats
Innovation
Technology
Genes
Gene therapy

Labeling for Quantitative Comparison of Imaging Measurements in Vitro and in Cells

Davis, C. M. & Gruebele, M., Apr 3 2018, In : Biochemistry. 57, 13, p. 1929-1938 10 p.

Research output: Contribution to journalReview article

Cytology
Labeling
RNA
Protein folding
Imaging techniques

Light-emitting diodes of colloidal quantum dots and nanorod heterostructures for future emissive displays

Jiang, Y., Cho, S. Y. & Shim, M., Jan 1 2018, In : Journal of Materials Chemistry C. 6, 11, p. 2618-2634 17 p.

Research output: Contribution to journalReview article

Nanorods
Semiconductor quantum dots
Light emitting diodes
Heterojunctions
Display devices

Machine learning and data science in soft materials engineering

Ferguson, A., Jan 31 2018, In : Journal of Physics Condensed Matter. 30, 4, 043002.

Research output: Contribution to journalReview article

machine learning
Learning systems
engineering
learning
engine design
Biodiversity
Mechanics
Punctures
mechanics
biodiversity

Metabolism of hydrogen gases and bile acids in the gut microbiome

Hylemon, P. B., Harris, S. C. & Ridlon, J. M., Jun 2018, In : FEBS Letters. 592, 12, p. 2070-2082 13 p.

Research output: Contribution to journalReview article

Carbon Monoxide
Bile Acids and Salts
Metabolism
Hydrogen
Gases

Microbiome-mediated effects of the Mediterranean diet on inflammation

Bailey, M. A. & Holscher, H. D., May 1 2018, In : Advances in Nutrition. 9, 3, p. 93-206 114 p.

Research output: Contribution to journalReview article

Mediterranean Diet
endotoxemia
Mediterranean diet
Endotoxemia
Microbiota

Microscopic view of lipids and their diverse biological functions

Wen, P. C., Mahinthichaichan, P., Trebesch, N., Jiang, T., Zhao, Z., Shinn, E., Wang, Y., Shekhar, M., Kapoor, K., Chan, C. K. & Tajkhorshid, E., Aug 2018, In : Current Opinion in Structural Biology. 51, p. 177-186 10 p.

Research output: Contribution to journalReview article

Lipids
Membranes
Physiological Phenomena
Lipid Bilayers
Hydrodynamics

Multichannel spectrometers in animals

Cronin, T. W., Garcia, M. & Gruev, V., Mar 2018, In : Bioinspiration and Biomimetics. 13, 2, 021001.

Research output: Contribution to journalReview article

Imaging systems
Spectrometers
Animals
Biomimetics
Invertebrates

Novel sensing technology in fall risk assessment in older adults: A systematic review

Sun, R. & Sosnoff, J. J., Jan 16 2018, In : BMC Geriatrics. 18, 1, 14.

Research output: Contribution to journalReview article

Technology
Biomechanical Phenomena
Walking
Meta-Analysis
Lasers

Novel technology for mobility and balance tracking in patients with multiple sclerosis: a systematic review

Sun, R., McGinnis, R. & Sosnoff, J. J., Nov 2 2018, In : Expert Review of Neurotherapeutics. 18, 11, p. 887-898 12 p.

Research output: Contribution to journalReview article

Patient Identification Systems
Multiple Sclerosis
Technology
Population
Sclerosis

Of Mice, Dogs, Pigs, and Men: Choosing the Appropriate Model for Immuno-Oncology Research

Overgaard, N. H., Fan, T. M., Schachtschneider, K. M., Principe, D. R., Schook, L. B. & Jungersen, G., Dec 31 2018, In : ILAR Journal. 59, 3, p. 247-262 16 p.

Research output: Contribution to journalReview article

Oncology
Tumors
Swine
Dogs
swine

Optimizing photorespiration for improved crop productivity

South, P. F., Cavanagh, A. P., Lopez-Calcagno, P. E., Raines, C. A. & Ort, D. R., Dec 2018, In : Journal of Integrative Plant Biology. 60, 12, p. 1217-1230 14 p.

Research output: Contribution to journalReview article

photorespiration
Crops
ribulose 1,5-diphosphate
Productivity
Oxygenases

Phloem function: a key to understanding and manipulating plant responses to rising atmospheric [CO2]?

Ainsworth, E. & Lemonnier, P., Jun 2018, In : Current opinion in plant biology. 43, p. 50-56 7 p.

Research output: Contribution to journalReview article

phloem
plant response
carbon dioxide
phloem loading
sucrose

Plasmonic nano-arrays for ultrasensitive bio-sensing

Jiang, J., Wang, X., Li, S., Ding, F., Li, N., Meng, S., Li, R., Qi, J., Liu, Q. & Liu, G. L., Jan 1 2018, In : Nanophotonics. 7, 9, p. 1517-1531 15 p.

Research output: Contribution to journalReview article

Surface Plasmon Resonance
Surface plasmon resonance
surface plasmon resonance
Sensor arrays
Point-of-Care Systems

Point-of-care sensors for the management of sepsis

Reddy, B., Hassan, U., Seymour, C., Angus, D. C., Isbell, T. S., White, K., Weir, W., Yeh, L., Vincent, A. & Bashir, R., Sep 1 2018, In : Nature biomedical engineering. 2, 9, p. 640-648 9 p.

Research output: Contribution to journalReview article

Point-of-Care Systems
Sepsis
Health
Sensors
Infection

Positive Psychological Well-Being and Cardiovascular Disease: JACC Health Promotion Series

Kubzansky, L. D., Huffman, J. C., Boehm, J. K., Hernandez, R., Kim, E. S., Koga, H. K., Feig, E. H., Lloyd-Jones, D. M., Seligman, M. E. P. & Labarthe, D. R., Sep 18 2018, In : Journal of the American College of Cardiology. 72, 12, p. 1382-1396 15 p.

Research output: Contribution to journalReview article

Health Promotion
Cardiovascular Diseases
Psychology
Health
Psychological Models

Postural control deficits in people with Multiple Sclerosis: A systematic review and meta-analysis

Comber, L., Sosnoff, J. J., Galvin, R. & Coote, S., Mar 2018, In : Gait and Posture. 61, p. 445-452 8 p.

Research output: Contribution to journalReview article

Multiple Sclerosis
Meta-Analysis
Gait
Case-Control Studies
Research Design

Potential lymphangiogenesis therapies: Learning from current antiangiogenesis therapies—A review

Yamakawa, M., Doh, S. J., Santosa, S. M., Montana, M., Qin, E. C., Kong, H. J., Han, K. Y., Yu, C., Rosenblatt, M. I., Kazlauskas, A., Chang, J. H. & Azar, D. T., Nov 2018, In : Medicinal Research Reviews. 38, 6, p. 1769-1798 30 p.

Research output: Contribution to journalReview article

Lymphangiogenesis
Learning
Pharmaceutical Preparations
Vascular Endothelial Growth Factor C
Nanotechnology

Preface: Valedictory from a Gadfly Grammarian

Berenbaum, M. R., Jan 7 2018, In : Annual Review of Entomology. 63, p. v-ix

Research output: Contribution to journalReview article

entomology

Prospects for single-site interrogation using in situ multimodal electrochemical scanning probe techniques

Schorr, N. B., Gossage, Z. T. & Rodriguez Lopez, J., Mar 2018, In : Current Opinion in Electrochemistry. 8, p. 89-95 7 p.

Research output: Contribution to journalReview article

Scanning
Scanning probe microscopy
Vibrational spectroscopy
Chemical analysis
Mass spectrometry

P-TEFb: Finding its ways to release promoter-proximally paused RNA polymerase II

Li, Y., Liu, M., Chen, L-F. & Chen, R., Mar 15 2018, In : Transcription. 9, 2, p. 88-94 7 p.

Research output: Contribution to journalReview article

Positive Transcriptional Elongation Factor B
RNA Polymerase II
Small Nuclear Ribonucleoproteins
Genetic Promoter Regions
Genes

Quantitative phase imaging in biomedicine

Park, Y. K., Depeursinge, C. & Popescu, G., Oct 1 2018, In : Nature Photonics. 12, 10, p. 578-589 12 p.

Research output: Contribution to journalReview article

Imaging techniques
commercialization
optical paths
microscopy
Photobleaching

Recent advances in metabolic engineering of Saccharomyces cerevisiae: New tools and their applications

Lian, J., Mishra, S. & Zhao, H., Nov 2018, In : Metabolic Engineering. 50, p. 85-108 24 p.

Research output: Contribution to journalReview article

Metabolic engineering
Metabolic Engineering
Yeast
Saccharomyces cerevisiae
Clustered Regularly Interspaced Short Palindromic Repeats

Recent developments in the application of P450 based biocatalysts

Wei, Y., Ang, E. L. & Zhao, H., Apr 2018, In : Current Opinion in Chemical Biology. 43, p. 1-7 7 p.

Research output: Contribution to journalReview article

Mixed Function Oxygenases
Enzymes
Biosynthesis
Biological Products
Cytochrome P-450 Enzyme System

Reconstitution and substrate specificity for isopentenyl pyrophosphate of the antiviral radical SAM enzyme viperin

Chakravarti, A., Selvadurai, K., Shahoei, R., Lee, H., Fatma, S., Tajkhorshid, E. & Huang, R. H., Jan 1 2018, In : Journal of Biological Chemistry. 293, 36, p. 14122-14133 12 p.

Research output: Contribution to journalReview article

Substrate Specificity
Antiviral Agents
Substrates
Enzymes
Mevalonic Acid

Reprint of: Positive Psychological Well-Being and Cardiovascular Disease: JACC Health Promotion Series

Kubzansky, L. D., Huffman, J. C., Boehm, J. K., Hernandez, R., Kim, E. S., Koga, H. K., Feig, E. H., Lloyd-Jones, D. M., Seligman, M. E. P. & Labarthe, D. R., Dec 11 2018, In : Journal of the American College of Cardiology. 72, 23, p. 3012-3026 15 p.

Research output: Contribution to journalReview article

Health Promotion
Cardiovascular Diseases
Psychology
Health
Psychological Models

Reproducibility and replicability of rodent phenotyping in preclinical studies

Kafkafi, N., Agassi, J., Chesler, E. J., Crabbe, J. C., Crusio, W. E., Eilam, D., Gerlai, R., Golani, I., Gomez-Marin, A., Heller, R., Iraqi, F., Jaljuli, I., Karp, N. A., Morgan, H., Nicholson, G., Pfaff, D. W., Richter, S. H., Stark, P. B., Stiedl, O., Stodden, V. & 6 others, Tarantino, L. M., Tucci, V., Valdar, W., Williams, R. W., Würbel, H. & Benjamini, Y., Apr 2018, In : Neuroscience and Biobehavioral Reviews. 87, p. 218-232 15 p.

Research output: Contribution to journalReview article

Information Dissemination
Rodentia
Genotype
Research Personnel
Health

Review: The epic journey of sperm through the female reproductive tract

Miller, D. J., Jun 1 2018, In : Animal. 12, s1, p. s110-s120

Research output: Contribution to journalReview article

spermatozoa
fertilization (reproduction)
oviducts
oocytes
natural mating

RiPP antibiotics: biosynthesis and engineering potential

Hudson, G. A. & Mitchell, D. A., Oct 2018, In : Current Opinion in Microbiology. 45, p. 61-69 9 p.

Research output: Contribution to journalReview article

Anti-Bacterial Agents
Biosynthetic Pathways
Biological Products
Peptide Synthases
Synthetic Biology

Rooting Phylogenies and the Tree of Life While Minimizing Ad Hoc and Auxiliary Assumptions

Caetano-Anolles, G., Nasir, A., Kim, K. M. & Caetano-Anollés, D., Oct 1 2018, In : Evolutionary Bioinformatics. 14

Research output: Contribution to journalReview article

Phylogeny
rooting
phylogeny
Biological Evolution
Data storage equipment
Markov chains
Markov Chain Monte Carlo Methods
Monte Carlo method
sampling
Unknown

Secondary structures in synthetic polypeptides from N-carboxyanhydrides: design, modulation, association, and material applications

Song, Z., Fu, H., Wang, R., Pacheco, L. A., Wang, X., Lin, Y. & Cheng, J., Oct 7 2018, In : Chemical Society Reviews. 47, 19, p. 7401-7425 25 p.

Research output: Contribution to journalReview article

Modulation
Association reactions
Peptides
Conformations
Polymers

Sensitivity of peripheral membrane proteins to the membrane context: A case study of phosphatidylserine and the TIM proteins

Kerr, D., Tietjen, G. T., Gong, Z., Tajkhorshid, E., Adams, E. J. & Lee, K. Y. C., Oct 2018, In : Biochimica et Biophysica Acta - Biomembranes. 1860, 10, p. 2126-2133 8 p.

Research output: Contribution to journalReview article

T-cells
Phosphatidylserines
Mucins
Immunoglobulins
Membrane Proteins

Sequence-specific control of inorganic nanomaterials morphologies by biomolecules

Wang, Y., Reddy Satyavolu, N. S. & Lu, Y., Nov 2018, In : Current Opinion in Colloid and Interface Science. 38, p. 158-169 12 p.

Research output: Contribution to journalReview article

Biomolecules
Nanostructured materials
synthesis
Peptides
peptides

Simulating biological processes: Stochastic physics from whole cells to colonies

Earnest, T. M., Cole, J. A. & Luthey-Schulten, Z. A., Apr 5 2018, In : Reports on Progress in Physics. 81, 5, 052601.

Research output: Contribution to journalReview article

stochastic processes
physics
cells
biological evolution
ribosomes