Research Output 1968 2020

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Review article
2018

Advancing Metabolic Engineering of Saccharomyces cerevisiae Using the CRISPR/Cas System

Lian, J., HamediRad, M. & Zhao, H., Sep 2018, In : Biotechnology Journal. 13, 9, 1700601.

Research output: Contribution to journalReview article

Clustered Regularly Interspaced Short Palindromic Repeats
Metabolic Engineering
Saccharomyces cerevisiae
Gene Knockout Techniques
Biotechnology

A framework for enhancing ethical genomic research with Indigenous communities

Summer internship for INdigenous peoples in Genomics (SING) Consortium, Dec 1 2018, In : Nature communications. 9, 1, 2957.

Research output: Contribution to journalReview article

health
Research
inclusions
magnetic permeability
Health

Alley cropping: Global patterns of species composition and function

Wolz, K. J. & Delucia, E. H., Jan 15 2018, In : Agriculture, Ecosystems and Environment. 252, p. 61-68 8 p.

Research output: Contribution to journalReview article

alley cropping
species diversity
crop
crops
fodder

An Emerging Circuit Pharmacology of GABAA Receptors

Engin, E., Benham, R. S. & Rudolph, U., Aug 2018, In : Trends in Pharmacological Sciences. 39, 8, p. 710-732 23 p.

Research output: Contribution to journalReview article

GABA-A Receptors
Brain
Pharmacology
Networks (circuits)
Pharmaceutical Preparations

A new era for electron bifurcation

Peters, J. W., Beratan, D. N., Bothner, B., Dyer, R. B., Harwood, C. S., Heiden, Z. M., Hille, R., Jones, A. K., King, P. W., Lu, Y., Lubner, C. E., Minteer, S. D., Mulder, D. W., Raugei, S., Schut, G. J., Seefeldt, L. C., Tokmina-Lukaszewska, M., Zadvornyy, O. A., Zhang, P. & Adams, M. WW., Dec 2018, In : Current Opinion in Chemical Biology. 47, p. 32-38 7 p.

Research output: Contribution to journalReview article

Electrons
Biochemical Phenomena
Anaerobiosis
Electron Transport Complex III
Redox reactions

A new perspective of the hippocampus in the origin of exercise–brain interactions

Rendeiro, C. & Rhodes, J. S., Jul 1 2018, In : Brain Structure and Function. 223, 6, p. 2527-2545 19 p.

Research output: Contribution to journalReview article

Hippocampus
Exercise
Brain
Neuronal Plasticity
Neurogenesis

Applications of power ultrasound in oriented modification and degradation of pectin: A review

Wang, W., Chen, W., Zou, M., Lv, R., Wang, D., Hou, F., Feng, H., Ma, X., Zhong, J., Ding, T., Ye, X. & Liu, D., Oct 2018, In : Journal of Food Engineering. 234, p. 98-107 10 p.

Research output: Contribution to journalReview article

pectins
degradation
Technology
sustainable technology
functional properties

Approaches and challenges to the study of loess - Introduction to the LoessFest Special Issue

Schaetzl, R. J., Bettis, E. A., Crouvi, O., Fitzsimmons, K. E., Grimley, D. A., Hambach, U., Lehmkuhl, F., Marković, S. B., Mason, J. A., Owczarek, P., Roberts, H. M., Rousseau, D. D., Stevens, T., Vandenberghe, J., Zárate, M., Veres, D., Yang, S., Zech, M., Conroy, J., Dave, A. K. & 8 others, Faust, D., Hao, Q., Obreht, I., Prud'Homme, C., Smalley, I., Tripaldi, A., Zeeden, C. & Zech, R., May 1 2018, In : Quaternary Research (United States). 89, 3, p. 563-618 56 p.

Research output: Contribution to journalReview article

loess
student
Loess

Archaea-First and the Co-Evolutionary Diversification of Domains of Life

Staley, J. T. & Caetano-Anolles, G., Aug 2018, In : BioEssays. 40, 8, 1800036.

Research output: Contribution to journalReview article

Archaea
Bacteria
Cells
Eukaryota
Methane

A review of data-driven building energy consumption prediction studies

Amasyali, K. & El-Gohary, N., Jan 1 2018, In : Renewable and Sustainable Energy Reviews. 81, p. 1192-1205 14 p.

Research output: Contribution to journalReview article

Energy utilization
Learning algorithms
Learning systems
Conservation
Planning

aTRAM 2.0: An Improved, Flexible Locus Assembler for NGS Data

Allen, J. M., LaFrance, R., Folk, R. A., Johnson, K. P. & Guralnick, R. P., 2018, In : Evolutionary Bioinformatics. 14, 4 p.

Research output: Contribution to journalReview article

Workflow
Genes
Genome
loci
genome

Attitudes and Attitude Change

Albarracin, D. & Shavitt, S., Jan 4 2018, In : Annual review of psychology. 69, p. 299-327 29 p.

Research output: Contribution to journalReview article

Social Media
Language Development
Human Development
Research
Emotions

Auditory system dysfunction in Alzheimer disease and its prodromal states: A review

Swords, G. M., Nguyen, L. T., Mudar, R. & Llano, D. A., Jul 2018, In : Ageing Research Reviews. 44, p. 49-59 11 p.

Research output: Contribution to journalReview article

Prodromal Symptoms
Alzheimer Disease
Central Auditory Diseases
Quality of Life
Pure-Tone Audiometry

Avian prenatal auditory stimulation: progress and perspectives

Rivera, M., Louder, M. I. M., Kleindorfer, S., Liu, W. C. & Hauber, M. E., Jul 1 2018, In : Behavioral Ecology and Sociobiology. 72, 7, 112.

Research output: Contribution to journalReview article

acoustics
embryo
embryo (animal)
bird
birds

Beast of America: Sovereignty and the wildness of objects

Byrd, J., Jul 2018, In : South Atlantic Quarterly. 117, 3, p. 599-615 17 p.

Research output: Contribution to journalReview article

sovereignty
Beast
Sovereignty
Wildness

Big data and extreme-scale computing: Pathways to Convergence-Toward a shaping strategy for a future software and data ecosystem for scientific inquiry

Asch, M., Moore, T., Badia, R., Beck, M., Beckman, P., Bidot, T., Bodin, F., Cappello, F., Choudhary, A., de Supinski, B., Deelman, E., Dongarra, J., Dubey, A., Fox, G., Fu, H., Girona, S., Gropp, W. D., Heroux, M., Ishikawa, Y., Keahey, K. & 19 others, Keyes, D., Kramer, W. T., Lavignon, J. F., Lu, Y., Matsuoka, S., Mohr, B., Reed, D., Requena, S., Saltz, J., Schulthess, T., Stevens, R., Swany, M., Szalay, A., Tang, W., Varoquaux, G., Vilotte, J. P., Wisniewski, R., Xu, Z. & Zacharov, I., Jul 1 2018, In : International Journal of High Performance Computing Applications. 32, 4, p. 435-479 45 p.

Research output: Contribution to journalReview article

Ecosystem
Ecosystems
Pathway
Extremes
Software

Biocatalysis for the synthesis of pharmaceuticals and pharmaceutical intermediates

Sun, H., Zhang, H., Ang, E. L. & Zhao, H., Apr 1 2018, In : Bioorganic and Medicinal Chemistry. 26, 7, p. 1275-1284 10 p.

Research output: Contribution to journalReview article

Biocatalysis
Enzymes
Pharmaceutical Preparations
Oxidoreductases
Protein Engineering

Bioengineered Liver Models for Drug Testing and Cell Differentiation Studies

Underhill, G. H. & Khetani, S. R., Mar 2018, In : CMGH. 5, 3, p. 426-439.e1

Research output: Contribution to journalReview article

Cell Differentiation
Liver
Pharmaceutical Preparations
Hepatocytes
Cell- and Tissue-Based Therapy

Biological consequences of weak acidification caused by elevated carbon dioxide in freshwater ecosystems

Hasler, C. T., Jeffrey, J. D., Schneider, E. V. C., Hannan, K. D., Tix, J. A. & Suski, C. D., Jan 1 2018, In : Hydrobiologia. 806, 1

Research output: Contribution to journalReview article

freshwater ecosystem
acidification
carbon dioxide
biota
ecosystems

Biomass and biofuels in China: Toward bioenergy resource potentials and their impacts on the environment

Qin, Z., Zhuang, Q., Cai, X., He, Y., Huang, Y., Jiang, D., Lin, E., Liu, Y., Tang, Y. & Wang, M. Q., Feb 2018, In : Renewable and Sustainable Energy Reviews. 82, p. 2387-2400 14 p.

Research output: Contribution to journalReview article

Biofuels
Crops
Biomass
Ecosystems
Ethanol

Biophysics of Tumor Microenvironment and Cancer Metastasis - A Mini Review

Emon, B., Bauer, J., Jain, Y., Jung, B. & Saif, M. T. A., Jan 1 2018, In : Computational and Structural Biotechnology Journal. 16, p. 279-287 9 p.

Research output: Contribution to journalReview article

Biophysics
Tumor Microenvironment
Tumors
Cells
Neoplasm Metastasis

Bone regeneration strategies: Engineered scaffolds, bioactive molecules and stem cells current stage and future perspectives

Ho-Shui-Ling, A., Bolander, J., Rustom, L. E., Wagoner Johnson, A. J., Luyten, F. P. & Picart, C., Oct 2018, In : Biomaterials. 180, p. 143-162 20 p.

Research output: Contribution to journalReview article

Bone Substitutes
Bone Regeneration
Stem cells
Scaffolds
Bone

Breaking the Axial Diffraction Limit: A Guide to Axial Super-Resolution Fluorescence Microscopy

Liu, W., Toussaint, K. C., Okoro, C., Zhu, D., Chen, Y., Kuang, C. & Liu, X., Aug 2018, In : Laser and Photonics Reviews. 12, 8, 1700333.

Research output: Contribution to journalReview article

Fluorescence microscopy
Diffraction
microscopy
fluorescence
diffraction

CAMP, Ca2+, pHi, and NO Regulate H-like Cation Channels That Underlie Feeding and Locomotion in the Predatory Sea Slug Pleurobranchaea californica

Green, D. J., Huang, R. C., Sudlow, L., Hatcher, N., Potgieter, K., McCrohan, C., Lee, C., Romanova, E. V., Sweedler, J. V., Gillette, M. L. & Gillette, R., Aug 15 2018, In : ACS Chemical Neuroscience. 9, 8, p. 1986-1993 8 p.

Research output: Contribution to journalReview article

Pleurobranchaea
Gastropoda
Locomotion
Nitric Oxide Synthase
Oceans and Seas

Causes and Consequences of Spatial Within-Host Viral Spread

Gallagher, M. E., Brooke, C. B., Ke, R. & Koelle, K., Nov 13 2018, In : Viruses. 10, 11

Research output: Contribution to journalReview article

Influenza A virus
Population Genetics
Population Dynamics
Virion
Respiratory System
Cell adhesion
Cell Adhesion
Epithelial Cells
Adhesion
Epithelium

Cell-Extracellular Matrix Mechanobiology: Forceful Tools and Emerging Needs for Basic and Translational Research

Holle, A. W., Young, J. L., Van Vliet, K. J., Kamm, R. D., Discher, D., Janmey, P., Spatz, J. P. & Saif, T., Jan 10 2018, In : Unknown Journal. 18, 1, p. 1-8 8 p.

Research output: Contribution to journalReview article

emerging
Mechanics
cues
Signal transduction
Neurology

Circadian redox rhythms in the regulation of neuronal excitability

Bothwell, M. Y. & Gillette, M. L., May 1 2018, In : Free Radical Biology and Medicine. 119, p. 45-55 11 p.

Research output: Contribution to journalReview article

Circadian Rhythm
Oxidation-Reduction
Suprachiasmatic Nucleus
Membranes
Ion Channels

Complex integration of intrinsic and peripheral signaling is required for pituitary gland development

Edwards, W. & Raetzman, L. T., Sep 1 2018, In : Biology of reproduction. 99, 3, p. 504-513 10 p.

Research output: Contribution to journalReview article

Pituitary Gland
Endocrine Cells
Stem Cells
Research
Pituitary Diseases

Conceptualization of a US Research Software Sustainability Institute (URSSI)

Carver, J. C., Gesing, S., Katz, D. S., Ram, K. & Weber, N., May 1 2018, In : Computing in Science and Engineering. 20, 3, p. 4-9 6 p.

Research output: Contribution to journalReview article

Sustainable development
Engineering research
Software engineering

Consensus, uncertainties and challenges for perennial bioenergy crops and land use

Whitaker, J., Field, J. L., Bernacchi, C. J., Cerri, C. E. P., Ceulemans, R., Davies, C. A., DeLucia, E. H., Donnison, I. S., McCalmont, J. P., Paustian, K., Rowe, R. L., Smith, P., Thornley, P. & McNamara, N. P., Mar 2018, In : GCB Bioenergy. 10, 3, p. 150-164 15 p.

Research output: Contribution to journalReview article

energy crops
bioenergy
Land use
Crops
Greenhouse gases

Continuous relaxation spectra for constitutive models in medium-amplitude oscillatory shear

Martinetti, L., Soulages, J. M. & Ewoldt, R. H., Sep 1 2018, In : Journal of Rheology. 62, 5, p. 1271-1298 28 p.

Research output: Contribution to journalReview article

Constitutive models
Relaxation time
Sodium borate
shear
relaxation time

Correlates and Consequences of Worker Polymorphism in Ants

Wills, B. D., Powell, S., Rivera, M. D. & Suarez, A., Jan 7 2018, In : Annual Review of Entomology. 63, p. 575-598 24 p.

Research output: Contribution to journalReview article

polymorphism
ant
body size
Formicidae
life history trait

Crowdsourcing Methods for Data Collection in Geophysics: State of the Art, Issues, and Future Directions

Zheng, F., Tao, R., Maier, H. R., See, L., Savic, D., Zhang, T., Chen, Q., Assumpção, T. H., Yang, P., Heidari, B., Rieckermann, J., Minsker, B., Bi, W., Cai, X., Solomatine, D. & Popescu, I., Dec 2018, In : Reviews of Geophysics. 56, 4, p. 698-740 43 p.

Research output: Contribution to journalReview article

geophysics
data acquisition
geography
hazard management
privacy

CryoEM-based hybrid modeling approaches for structure determination

Cassidy, C. K., Himes, B. A., Luthey-Schulten, Z. A. & Zhang, P., Jun 2018, In : Current Opinion in Microbiology. 43, p. 14-23 10 p.

Research output: Contribution to journalReview article

Cryoelectron Microscopy

Current evidence allows multiple models for the peopling of the Americas

Potter, B. A., Baichtal, J. F., Beaudoin, A. B., Fehren-Schmitz, L., Haynes, C. V., Holliday, V. T., Holmes, C. E., Ives, J. W., Kelly, R. L., Llamas, B., Malhi, R. S., Miller, D. S., Reich, D., Reuther, J. D., Schiffels, S. & Surovell, T. A., Aug 8 2018, In : Science Advances. 4, 8, eaat5473.

Research output: Contribution to journalReview article

ice free corridor
geomorphology
strait
colonization
ice

Dark energy survey year 1 results: The photometric data set for cosmology

DES Collaboration, Apr 2018, In : Astrophysical Journal, Supplement Series. 235, 2, 33.

Research output: Contribution to journalReview article

cosmology
dark energy
energy
catalogs
calibration

Detection and digital resolution counting of nanoparticles with optical resonators and applications in biosensing

Aguirre, M. Á., Long, K. D., Li, N., Manoto, S. L. & Cunningham, B. T., Jun 1 2018, In : Chemosensors. 6, 2, 13.

Research output: Contribution to journalReview article

Optical resonators
optical resonators
counting
Nanoparticles
nanoparticles

Deterministic Design of Chemistry and Mesostructure in Li-Ion Battery Electrodes

Braun, P. V. & Cook, J. B., Apr 24 2018, In : ACS Nano. 12, 4, p. 3060-3064 5 p.

Research output: Contribution to journalReview article

electric batteries
chemistry
Electrodes
electrodes
ions

Development of Photoacoustic Probes for in Vivo Molecular Imaging

Reinhardt, C. J. & Chan, J. K. F., Jan 16 2018, In : Biochemistry. 57, 2, p. 194-199 6 p.

Research output: Contribution to journalReview article

Molecular imaging
Biological Models
Molecular Imaging
Photoacoustic effect
Optical Imaging
Catalysts
Nanoparticles
Oxidation
Alkanes
Catalyst selectivity

Diverse evolutionary origins and mechanisms of lens regeneration

Henry, J. J. & Hamilton, P. W., Jan 1 2018, In : Molecular biology and evolution. 35, 7, p. 1563-1575 13 p.

Research output: Contribution to journalReview article

Lens
Lenses
Regeneration
regeneration
vertebrate

Drying tendency dominating the global grain production area

Wang, Z., Li, J., Lai, C., Wang, R. Y., Chen, X. & Lian, Y., Mar 2018, In : Global Food Security. 16, p. 138-149 12 p.

Research output: Contribution to journalReview article

Drought
Droughts
drought
agricultural product
Drying

Dynamics of cognitive control: Theoretical bases, paradigms, and a view for the future

Gratton, G., Cooper, P., Fabiani, M., Carter, C. S. & Karayanidis, F., Mar 2018, In : Psychophysiology. 55, 3, e13016.

Research output: Contribution to journalReview article

Executive Function
Task Performance and Analysis
Magnetic Resonance Imaging
Brain
Research

Earth BioGenome Project: Sequencing life for the future of life

Lewin, H. A., Robinson, G. E., Kress, W. J., Baker, W. J., Coddington, J., Crandall, K. A., Durbin, R., Edwards, S. V., Forest, F., Gilbert, M. T. P., Goldstein, M. M., Grigoriev, I. V., Hackett, K. J., Haussler, D., Jarvis, E. D., Johnson, W. E., Patrinos, A., Richards, S., Castilla-Rubio, J. C., Van Sluys, M. A. & 4 others, Soltis, P. S., Xu, X., Yang, H. & Zhang, G., Apr 24 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 17, p. 4325-4333 9 p.

Research output: Contribution to journalReview article

Biodiversity
Ecosystem
Planets
Endangered Species
Information Dissemination

Editorial: Building strategies for porcine cancer models

Collares, T., Seixas, F. K., Rund, L. A. & Schook, L. B., Oct 2 2018, In : Frontiers in Genetics. 9, OCT, 377.

Research output: Contribution to journalReview article

Swine
Neoplasms

Emergence of two near-infrared windows for in vivo and intraoperative SERS

Lane, L. A., Xue, R. & Nie, S., Aug 2018, In : Current Opinion in Chemical Biology. 45, p. 95-103 9 p.

Research output: Contribution to journalReview article

Raman Spectrum Analysis
Raman scattering
Tissue
Infrared radiation
Light

Engineering Polymersomes for Diagnostics and Therapy

Leong, J., Teo, J. Y., Aakalu, V. K., Yang, Y. Y. & Kong, H. J., Apr 25 2018, In : Advanced Healthcare Materials. 7, 8, 1701276.

Research output: Contribution to journalReview article

Imaging techniques
Molecules
Controllability
Pharmaceutical Preparations
Self assembly

Engineering the Surface of Therapeutic "living" Cells

Park, J., Andrade, B., Seo, Y., Kim, M. J., Zimmerman, S. C. & Kong, H. J., Feb 28 2018, In : Chemical reviews. 118, 4, p. 1664-1690 27 p.

Research output: Contribution to journalReview article

Cell engineering
Drug Carriers
Adhesion
Tissue
Nanoparticles

Escapement mechanisms and the conversion of disequilibria; the engines of creation

Branscomb, E., Biancalani, T., Goldenfeld, N. & Russell, M., Mar 17 2018, In : Physics Reports. 677, p. 1-60 60 p.

Research output: Contribution to journalReview article

engines
cascades
free energy
energy
causes