Research Output 1969 2020

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Review article
2014

DNA assembly techniques for next-generation combinatorial biosynthesis of natural products

Cobb, R. E., Ning, J. C. & Zhao, H., Feb 1 2014, In : Journal of Industrial Microbiology and Biotechnology. 41, 2, p. 469-477 9 p.

Research output: Contribution to journalReview article

Biosynthesis
Biological Products
DNA
Synthetic Biology
Cloning

DNA as sensors and imaging agents for metal ions

Xiang, Y. & Lu, Y., Feb 17 2014, In : Inorganic Chemistry. 53, 4, p. 1925-1942 18 p.

Research output: Contribution to journalReview article

Metal ions
metal ions
deoxyribonucleic acid
Imaging techniques
DNA

Does it talk the talk' on the role of basal ganglia in emotive speech processing

Hasson, U., Llano, D. A., Miceli, G. & Dick, A. S., May 15 2014, In : Behavioral and Brain Sciences. 37, 6, p. 556-557 2 p.

Research output: Contribution to journalReview article

Basal Ganglia
Emotions
emotion
Speech Processing
Auditory Processing

Evaluating and selecting mobile health apps: strategies for healthcare providers and healthcare organizations

Boudreaux, E. D., Waring, M. E., Hayes, R. B., Sadasivam, R. S., Mullen, S. P. & Pagoto, S., Jan 1 2014, In : Translational behavioral medicine. 4, 4, p. 363-371 9 p.

Research output: Contribution to journalReview article

Mobile Applications
Telemedicine
Health Personnel
Beneficence
Delivery of Health Care

Executive functions of sedentary elderly may benefit from walking: A systematic review and meta-analysis

Scherder, E., Scherder, R., Verburgh, L., Königs, M., Blom, M., Kramer, A. F. & Eggermont, L., Aug 2014, In : American Journal of Geriatric Psychiatry. 22, 8, p. 782-791 10 p.

Research output: Contribution to journalReview article

Executive Function
Walking
Meta-Analysis
Information Storage and Retrieval
Confidence Intervals

Exploiting Issatchenkia orientalis SD108 for succinic acid production

Xiao, H., Shao, Z., Jiang, Y., Dole, S. & Zhao, H., Aug 27 2014, In : Microbial cell factories. 13, 1, 121.

Research output: Contribution to journalReview article

Organic acids
Succinic Acid
Acids
Yeast
Fermentation

Exposure to neurotoxicants and the development of attention deficit hyperactivity disorder and its related behaviors in childhood

Yolton, K., Cornelius, M., Ornoy, A., McGough, J., Makris, S. & Schantz, S. L., Jul 2014, In : Neurotoxicology and Teratology. 44, p. 30-45 16 p.

Research output: Contribution to journalReview article

Attention Deficit Disorder with Hyperactivity
Tobacco Products
Alcohols
Organophosphates
Heroin

Extremely Soft: Design with Rheologically Complex Fluids

Ewoldt, R. H., Mar 1 2014, In : Soft Robotics. 1, 1, p. 12-20 9 p.

Research output: Contribution to journalReview article

Robotics
Mucins
Cytoplasm
Gels
Fluids

Folding wings like a cockroach: A review of transverse wing folding ensign wasps (Hymenoptera: Evaniidae: Afrevania and Trissevania)

Mikó, I., Copeland, R. S., Balhoff, J. P., Yoder, M. J. & Deans, A. R., May 2 2014, In : PloS one. 9, 5, e94056.

Research output: Contribution to journalReview article

Evaniidae
Wasps
Cockroaches
Hymenoptera
Blattodea

Functional DNA nanomaterials for sensing and imaging in living cells

Torabi, S. F. & Lu, Y., Aug 1 2014, In : Current Opinion in Biotechnology. 28, p. 88-95 8 p.

Research output: Contribution to journalReview article

Nanostructures
Nanostructured materials
DNA
Cells
Imaging techniques

Functional tuning and expanding of myoglobin by rational protein design

Lin, Y., Wang, J. & Lu, Y., Mar 2014, In : Science China Chemistry. 57, 3, p. 346-355 10 p.

Research output: Contribution to journalReview article

Myoglobin
Metalloproteins
Tuning
Proteins
Nitrite Reductases

Genes on B chromosomes of vertebrates

Makunin, A. I., Dementyeva, P. V., Graphodatsky, A. S., Volobouev, V. T., Kukekova, A. V. & Trifonov, V. A., Jan 1 2014, In : Molecular Cytogenetics. 7, 1, 99.

Research output: Contribution to journalReview article

Chromosomes, Human, 4-5
Chromosomes
Vertebrates
Genes
Genomic Segmental Duplications

Genomic analyses of the CAM plant pineapple

Zhang, J., Liu, J. & Ming, R., Jul 2014, In : Journal of experimental botany. 65, 13, p. 3395-3404 10 p.

Research output: Contribution to journalReview article

Ananas
Crassulacean acid metabolism
pineapples
genomics
Acids

Genomics-enabled discovery of phosphonate natural products and their biosynthetic pathways

Ju, K. S., Doroghazi, J. R. & Metcalf, W. W., Feb 1 2014, In : Journal of Industrial Microbiology and Biotechnology. 41, 2, p. 345-356 12 p.

Research output: Contribution to journalReview article

Organophosphonates
Biochemistry
Biosynthetic Pathways
Biotechnology
Genomics

Genomics of sex determination

Zhang, J., Boualem, A., Bendahmane, A. & Ming, R. R., Apr 2014, In : Current opinion in plant biology. 18, 1, p. 110-116 7 p.

Research output: Contribution to journalReview article

genomics
gender
sex chromosomes
genes
dioecy

Grand challenges for archaeology

Kintigh, K. W., Altschul, J. H., Beaudry, M. C., Drennan, R. D., Kinzig, A. P., Kohler, T. A., Limp, W. F., Maschner, H. D. G., Michener, W. K., Pauketat, T. R., Peregrine, P., Sabloff, J. A., Wilkinson, T. J., Wright, H. T. & Zeder, M. A., Jan 1 2014, In : American Antiquity. 79, 1, p. 5-24 20 p.

Research output: Contribution to journalReview article

archaeology
large-scale research
resilience
community
persistence

Imaging lipids with secondary ion mass spectrometry

Kraft, M. L. & Klitzing, H. A., Aug 2014, In : Biochimica et Biophysica Acta - Molecular and Cell Biology of Lipids. 1841, 8, p. 1108-1119 12 p.

Research output: Contribution to journalReview article

Secondary Ion Mass Spectrometry
Lipids
Biochemistry

Influence of dietary fat on intestinal microbes, inflammation, barrier function and metabolic outcomes

Shen, W., Gaskins, H. R. & McIntosh, M. K., Mar 1 2014, In : Journal of Nutritional Biochemistry. 25, 3, p. 270-280 11 p.

Research output: Contribution to journalReview article

Dietary Fats
Fermentation
Inflammation
Health
Germ-Free Life

Interventions to reduce rehospitalizations after chronic obstructive pulmonary disease exacerbations: A systematic review

Prieto-Centurion, V., Markos, M. A., Ramey, N. I., Gussin, H. A., Nyenhuis, S. M., Joo, M. J., Prasad, B., Bracken, N., DiDomenico, R., Godwin, P. O., Jaffe, H. A., Kalhan, R., Pickard, A. S., Pittendrigh, B. R., Schatz, B. R., Sullivan, J. L., Thomashow, B. M., Williams, M. V. & Krishnan, J. A., Mar 2014, In : Annals of the American Thoracic Society. 11, 3, p. 417-424 8 p.

Research output: Contribution to journalReview article

Chronic Obstructive Pulmonary Disease
Disease Progression
Hospitalization
Centers for Medicare and Medicaid Services (U.S.)
Patient Readmission

Introduction to the yogurt in nutrition initiative and the first global summit on the health effects of yogurt

Donovan, S. M. & Shamir, R., May 1 2014, In : American Journal of Clinical Nutrition. 99, 5, p. 1209S-1211S

Research output: Contribution to journalReview article

Yogurt
Health
Food
Dairy Products
Insurance Benefits

Large-scale chromatin organization: The good, the surprising, and the still perplexing

Belmont, A. S., Feb 1 2014, In : Current Opinion in Cell Biology. 26, 1, p. 69-78 10 p.

Research output: Contribution to journalReview article

Chromatin
Chromosome Structures
Chromosomes
DNA

Lessons learned from the transformation of natural product discovery to a genome-driven endeavor

Deane, C. D. & Mitchell, D. A., Feb 1 2014, In : Journal of Industrial Microbiology and Biotechnology. 41, 2, p. 315-331 17 p.

Research output: Contribution to journalReview article

Biological Products
Genes
Genome
Multigene Family
Reverse Genetics
reservoir characterization
Sandstone
sandstone
basin
Carbon capture

Looking in the right direction Carl Woese and evolutionary biology

Goldenfeld, N., Jan 1 2014, In : RNA Biology. 11, 3, p. 248-253 6 p.

Research output: Contribution to journalReview article

Archaea
Population Genetics
Microbiology
Direction compound
Transcend

Materials chemistry in 3D templates for functional photonics

Braun, P. V., Jan 14 2014, In : Chemistry of Materials. 26, 1, p. 277-286 10 p.

Research output: Contribution to journalReview article

Photonics
Energy harvesting
Light emission
Metamaterials
Solar energy

Metalloenzyme design and engineering through strategic modifications of native protein scaffolds

Petrik, I. D., Liu, J. & Lu, Y., Apr 1 2014, In : Current Opinion in Chemical Biology. 19, 1, p. 67-75 9 p.

Research output: Contribution to journalReview article

Scaffolds
Protein Engineering
Catalysis
Catalytic Domain
Proteins

Metalloproteins containing cytochrome, iron-sulfur, or copper redox centers

Liu, J., Chakraborty, S., Hosseinzadeh, P., Yu, Y., Tian, S., Petrik, I., Bhagi, A. & Lu, Y., Apr 23 2014, In : Chemical reviews. 114, 8, p. 4366-4369 4 p.

Research output: Contribution to journalReview article

Metalloproteins
Cytochromes
Sulfur
Copper
Iron

Methods to study the tumor microenvironment under controlled oxygen conditions

Byrne, M. B., Leslie, M. T., Gaskins, H. R. & Kenis, P. J. A., Nov 1 2014, In : Trends in Biotechnology. 32, 11, p. 556-563 8 p.

Research output: Contribution to journalReview article

Tumor Microenvironment
Tumors
Microfluidics
Oxygen
Epithelial-Mesenchymal Transition

Microstructures and properties of high-entropy alloys

Zhang, Y., Zuo, T. T., Tang, Z., Gao, M. C., Dahmen, K. A., Liaw, P. K. & Lu, Z. P., Apr 2014, In : Progress in Materials Science. 61, p. 1-93 93 p.

Research output: Contribution to journalReview article

Entropy
Microstructure
Metallic glass
Magnetization
Stainless Steel

Middle and late pennsylvanian cyclothems, American midcontinent: Ice-age environmental changes and terrestrial biotic dynamics

Blaine Cecil, C., DiMichele, W. A. & Elrick, S. D., Jul 2014, In : Comptes Rendus - Geoscience. 346, 7-8, p. 159-168 10 p.

Research output: Contribution to journalReview article

cyclothem
Pennsylvanian
environmental change
wetland
sea level

Minireview: Steroid-regulated paracrine mechanisms controlling implantation

Pawar, S., Hantak, A. M., Bagchi, I. C. & Bagchi, M. K., Sep 1 2014, In : Molecular endocrinology (Baltimore, Md.). 28, 9, p. 1408-1422 15 p.

Research output: Contribution to journalReview article

Progesterone Receptors
Estrogen Receptors
Embryonic Structures
Steroids
Pregnancy

Multitarget drug discovery for tuberculosis and other infectious diseases

Li, K., Schurig-Briccio, L. A., Feng, X., Upadhyay, A., Pujari, V., Lechartier, B., Fontes, F. L., Yang, H., Rao, G., Zhu, W., Gulati, A., No, J. H., Cintra, G., Bogue, S., Liu, Y. L., Molohon, K., Orlean, P. A., Mitchell, D. A., Freitas-Junior, L., Ren, F. & 8 others, Sun, H., Jiang, T., Li, Y., Guo, R. T., Cole, S. T., Gennis, R. B., Crick, D. C. & Oldfield, E., Apr 10 2014, In : Journal of Medicinal Chemistry. 57, 7, p. 3126-3129 4 p.

Research output: Contribution to journalReview article

Drug Discovery
Malaria
Communicable Diseases
Parasites
Tuberculosis

Naming and outline of Dothideomycetes–2014 including proposals for the protection or suppression of generic names

Wijayawardene, N. N., Crous, P. W., Kirk, P. M., Hawksworth, D. L., Boonmee, S., Braun, U., Dai, D. Q., D’souza, M. J., Diederich, P., Dissanayake, A., Doilom, M., Hongsanan, S., Jones, E. B. G., Groenewald, J. Z., Jayawardena, R., Lawrey, J. D., Liu, J. K., Lücking, R., Madrid, H., Manamgoda, D. S. & 32 others, Muggia, L., Nelsen, M. P., Phookamsak, R., Suetrong, S., Tanaka, K., Thambugala, K. M., Wanasinghe, D. N., Wikee, S., Zhang, Y., Aptroot, A., Ariyawansa, H. A., Bahkali, A. H., Bhat, D. J., Gueidan, C., Chomnunti, P., De Hoog, G. S., Knudsen, K., Li, W. J., McKenzie, E. H. C., Miller, A. N., Phillips, A. J. L., Piątek, M., Raja, H. A., Shivas, R. S., Slippers, B., Taylor, J. E., Tian, Q., Wang, Y., Woudenberg, J. H. C., Cai, L., Jaklitsch, W. M. & Hyde, K. D., Dec 9 2014, In : Fungal Diversity. 69, 1, p. 1-55 55 p.

Research output: Contribution to journalReview article

nomenclature
Dothideomycetes
algae
fungi
fungus

Nano/micro and spectroscopic approaches to food pathogen detection

Cho, I. H., Radadia, A. D., Farrokhzad, K., Ximenes, E., Bae, E., Singh, A. K., Oliver, H., Ladisch, M., Bhunia, A., Applegate, B., Mauer, L., Bashir, R. & Irudayaraj, J., Jun 2014, In : Annual Review of Analytical Chemistry. 7, p. 65-88 24 p.

Research output: Contribution to journalReview article

Pathogens
Bacteriophages
Biosensors
Light scattering
Explosions

Nanoscale thermal transport. II. 2003-2012

Cahill, D. G., Braun, P. V., Chen, G., Clarke, D. R., Fan, S., Goodson, K. E., Keblinski, P., King, W. P., Mahan, G. D., Majumdar, A., Maris, H. J., Phillpot, S. R., Pop, E. & Shi, L., Mar 2014, In : Applied Physics Reviews. 1, 1, 011305.

Research output: Contribution to journalReview article

thermal conductivity
physics
thermal analysis
spatial resolution
crystals

New dates for kansyore and pastoral neolithic ceramics in the Eyasi Basin, Tanzania

Prendergast, M. E., Grillo, K. M., Mabulla, A. Z. P. & Wang, H., 2014, In : Journal of African Archaeology. 12, 1, p. 89-98 10 p.

Research output: Contribution to journalReview article

Tanzania
integrity
diagnostic
food
Pastoral Neolithic

New technologies for measuring single cell mass

Popescu, G., Park, K., Mir, M. & Bashir, R., Feb 21 2014, In : Lab on a chip. 14, 4, p. 646-652 7 p.

Research output: Contribution to journalReview article

Cells
Technology
Imaging techniques
Sensors
Medicine

Noninvasive molecular fingerprinting of host-microbiome interactions in neonates

Donovan, S. M., Wang, M., Siegel, M. H., Martin, C. R., Davidson, L. A., Ivanov, I. & Chapkin, R. S., Nov 17 2014, In : FEBS Letters. 588, 22, p. 4112-4119 8 p.

Research output: Contribution to journalReview article

Microbiota
Genes
Newborn Infant
Epithelial Cells
Infant Formula

Obesity, cholesterol metabolism, and breast cancer pathogenesis

McDonnell, D. P., Park, S., Goulet, M. T., Jasper, J., Wardell, S. E., Chang, C. Y., Norris, J. D., Guyton, J. R. & Nelson, E. R., Jul 24 2014, In : Cancer Research. 74, 18, p. 4976-4982 7 p.

Research output: Contribution to journalReview article

Obesity
Cholesterol
Breast Neoplasms
Lipid Metabolism
Macrophages

On theory in ecology

Marquet, P. A., Allen, A. P., Brown, J. H., Dunne, J. A., Enquist, B. J., Gillooly, J. F., Gowaty, P. A., Green, J. L., Harte, J., Hubbell, S. P., O'Dwyer, J., Okie, J. G., Ostling, A., Ritchie, M., Storch, D. & West, G. B., Aug 2014, In : BioScience. 64, 8, p. 701-710 10 p.

Research output: Contribution to journalReview article

Ecology
ecology
environmental science
Aptitude
prediction

Optical spectroscopy and velocity dispersions of galaxy clusters from the SPT-SZ survey

Ruel, J., Bazin, G., Bayliss, M., Brodwin, M., Foley, R. J., Stalder, B., Aird, K. A., Armstrong, R., Ashby, M. L. N., Bautz, M., Benson, B. A., Bleem, L. E., Bocquet, S., Carlstrom, J. E., Chang, C. L., Chapman, S. C., Cho, H. M., Clocchiatti, A., Crawford, T. M., Crites, A. T. & 62 others, De Haan, T., Desai, S., Dobbs, M. A., Dudley, J. P., Forman, W. R., George, E. M., Gladders, M. D., Gonzalez, A. H., Halverson, N. W., Harrington, N. L., High, F. W., Holder, G. P., Holzapfel, W. L., Hrubes, J. D., Jones, C., Joy, M., Keisler, R., Knox, L., Lee, A. T., Leitch, E. M., Liu, J., Lueker, M., Luong-Van, D., Mantz, A., Marrone, D. P., McDonald, M., McMahon, J. J., Mehl, J., Meyer, S. S., Mocanu, L., Mohr, J. J., Montroy, T. E., Murray, S. S., Natoli, T., Nurgaliev, D., Padin, S., Plagge, T., Pryke, C., Reichardt, C. L., Rest, A., Ruhl, J. E., Saliwanchik, B. R., Saro, A., Sayre, J. T., Schaffer, K. K., Shaw, L., Shirokoff, E., Song, J., Šuhada, R., Spieler, H. G., Stanford, S. A., Staniszewski, Z., Starsk, A. A., Story, K., Stubbs, C. W., Van Engelen, A., Vanderlinde, K., Vieira, J. D., Vikhlinin, A., Williamson, R., Zahn, O. & Zenteno, A., Sep 1 2014, In : Astrophysical Journal. 792, 1, 45.

Research output: Contribution to journalReview article

poles
spectroscopy
telescopes
galaxies
catalogs

Outlier Detection for Temporal Data: A Survey

Gupta, M., Gao, J., Aggarwal, C. C. & Han, J., Sep 1 2014, In : IEEE Transactions on Knowledge and Data Engineering. 26, 9, p. 2250-2267 18 p., 6684530.

Research output: Contribution to journalReview article

Time series
Information management
Computer science
Computer hardware
Statistics

Pain management in veterinary patients with cancer

Fan, T. M., Sep 1 2014, In : The Veterinary clinics of North America. Small animal practice. 44, 5, p. 989-1001 13 p.

Research output: Contribution to journalReview article

Pain Management
pain
Pets
neoplasms
pets

Perturbation of pulmonary immune functions by carbon nanotubes and susceptibility to microbial infection

Walling, B. E. & Lau, G., Mar 1 2014, In : Journal of Microbiology. 52, 3, p. 227-234 8 p.

Research output: Contribution to journalReview article

Carbon Nanotubes
Lung
Infection
Bacterial Physiological Phenomena
Pulmonary Fibrosis

Plasmon resonances of semiconductor nanocrystals: Physical principles and new opportunities

Faucheaux, J. A., Stanton, A. L. D. & Jain, P., Mar 20 2014, In : Journal of Physical Chemistry Letters. 5, 6, p. 976-985 10 p.

Research output: Contribution to journalReview article

Surface plasmon resonance
surface plasmon resonance
Nanocrystals
nanocrystals
Semiconductor materials

Point-of-care and point-of-procedure optical imaging technologies for primary care and global health

Boppart, S. A. & Richards-Kortum, R., Sep 10 2014, In : Science Translational Medicine. 6, 253, 253rv2.

Research output: Contribution to journalReview article

Point-of-Care Systems
Optical Imaging
Primary Health Care
Technology
Telecommunications
Porcine epidemic diarrhea virus
pig
Disease Outbreaks
virus
Swine

Preparing your manuscript for submission to ACS catalysis

Jones, C. W., Smith, D. J., Gunnoe, T. B., Zhao, H., Sautet, P., Scott, S. L. & Xu, B. Q., Jan 1 2014, In : ACS Catalysis. 4, 8, p. 2827-2828 2 p.

Research output: Contribution to journalReview article

Catalysis

Programming the group behaviors of bacterial communities with synthetic cellular communication

Kong, W., Celik, V., Liao, C., Hua, Q. & Lu, T., Dec 1 2014, In : Bioresources and Bioprocessing. 1, 1, 24.

Research output: Contribution to journalReview article

Synthetic Genes
synthetic genes
Cellular radio systems
group behavior
Gene Regulatory Networks

Quantum Monte Carlo for Ab Initio calculations of energy-relevant materials

Wagner, L. K., Jan 15 2014, In : International Journal of Quantum Chemistry. 114, 2, p. 94-101 8 p.

Research output: Contribution to journalReview article

Monte Carlo method
density functional theory
Density functional theory
fossil fuels
Monte Carlo methods