Research Output 1967 2020

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Review article
2009

Biological Timekeeping

Gillette, M. L. & Abbott, S. M., Jun 1 2009, In : Sleep Medicine Clinics. 4, 2, p. 99-110 12 p.

Research output: Contribution to journalReview article

Biological Clocks
Circadian Clocks
Neurobiology
Periodicity
Sleep

Biosynthesis of phosphonic and phosphinic acid natural products

Metcalf, W. W. & van der Donk, W. A., Jul 27 2009, In : Annual review of biochemistry. 78, p. 65-94 30 p.

Research output: Contribution to journalReview article

Phosphinic Acids
Biosynthesis
Biological Products
Biochemistry
Phosphorous Acids

Board-invited review: The biology and regulation of preadipocytes and adipocytes in meat animals

Hausman, G. J., Dodson, M. V., Ajuwon, K., Azain, M., Barnes, K. M., Guan, L. L., Jiang, Z., Poulos, S. P., Sainz, R. D., Smith, S., Spurlock, M., Novakofski, J., Fernyhough, M. E. & Bergen, W. G., Apr 1 2009, In : Journal of animal science. 87, 4, p. 1218-1246 29 p.

Research output: Contribution to journalReview article

marbling
food animals
adipocytes
Adipocytes
Meat

Calling heads from tails: the role of mathematical modeling in understanding cell polarization

Onsum, M. D. & Rao, C. V., Feb 1 2009, In : Current Opinion in Cell Biology. 21, 1, p. 74-81 8 p.

Research output: Contribution to journalReview article

Head
Saccharomycetales
Chemotaxis

Characterizing intercellular signaling peptides in drug addiction

Romanova, E. V., Hatcher, N. G., Rubakhin, S. S. & Sweedler, J. V., Jan 1 2009, In : Neuropharmacology. 56, SUPPL. 1, p. 196-204 9 p.

Research output: Contribution to journalReview article

Substance-Related Disorders
Peptides
National Institute on Drug Abuse (U.S.)
Technology
Immunochemistry

Clustering of low-redshift (z ≤ 2.2) quasars from the sloan digital sky survey

Ross, N. P., Shen, Y., Strauss, M. A., Vanden Berk, D. E., Connolly, A. J., Richards, G. T., Schneider, D. P., Weinberg, D. H., Hall, P. B., Bahcall, N. A. & Brunner, R. J., Jan 1 2009, In : Astrophysical Journal. 697, 2, p. 1634-1655 22 p.

Research output: Contribution to journalReview article

quasars
halos
cosmology
dark matter
dimensional measurement

Cognitive control mechanisms, emotion and memory: A neural perspective with implications for psychopathology

Banich, M. T., Mackiewicz, K. L., Depue, B. E., Whitmer, A. J., Miller, G. A. & Heller, W., May 1 2009, In : Neuroscience and Biobehavioral Reviews. 33, 5, p. 613-630 18 p.

Research output: Contribution to journalReview article

Psychopathology
Emotions
Long-Term Memory
Short-Term Memory
Post-Traumatic Stress Disorders

Conscientiousness and externalizing psychopathology: Overlap, developmental patterns, and etiology of two related constructs

Roberts, B. W., Jackson, J. J., Burger, J. & Trautwein, U., Aug 1 2009, In : Development and Psychopathology. 21, 3, p. 871-888 18 p.

Research output: Contribution to journalReview article

Psychopathology

Convergence of biomarkers, bioinformatics and nanotechnology for individualized cancer treatment

Phan, J. H., Moffitt, R. A., Stokes, T. H., Liu, J., Young, A. N., Nie, S. & Wang, M. D., Jun 1 2009, In : Trends in Biotechnology. 27, 6, p. 350-358 9 p.

Research output: Contribution to journalReview article

Nanotechnology
Oncology
Biomarkers
Bioinformatics
Tumor Biomarkers

Design of functional metalloproteins

Lu, Y., Yeung, N., Sieracki, N. & Marshall, N. M., Aug 13 2009, In : Nature. 460, 7257, p. 855-862 8 p.

Research output: Contribution to journalReview article

Metalloproteins
Photosynthesis
Computational Biology
Water
Pharmaceutical Preparations

Development of multifunctional nanoparticles for targeted drug delivery and noninvasive imaging of therapeutic effect

Sajja, H. K., East, M. P., Mao, H., Wang, Y. A., Nie, S. & Yang, L., Mar 1 2009, In : Current Drug Discovery Technologies. 6, 1, p. 43-51 9 p.

Research output: Contribution to journalReview article

Therapeutic Uses
Nanoparticles
Pharmaceutical Preparations
Nanomedicine
Neoplasms

Diversity in enoyl-acyl carrier protein reductases

Massengo-Tiassé, R. P. & Cronan, J. E., Jan 1 2009, In : Cellular and Molecular Life Sciences. 66, 9, p. 1507-1517 11 p.

Research output: Contribution to journalReview article

Acyl Carrier Protein
Oxidoreductases
Triclosan
Isoniazid
Enzymes

Enzyme (re)design: lessons from natural evolution and computation

Gerlt, J. A. & Babbitt, P. C., Feb 1 2009, In : Current Opinion in Chemical Biology. 13, 1, p. 10-18 9 p.

Research output: Contribution to journalReview article

Mutagenesis
Enzymes
Screening

FACE-ing the global change: Opportunities for improvement in photosynthetic radiation use efficiency and crop yield

Sun, J., Yang, L., Wang, Y. & Ort, D. R., Dec 1 2009, In : Plant Science. 177, 6, p. 511-522 12 p.

Research output: Contribution to journalReview article

free air carbon dioxide enrichment
radiation use efficiency
Photosynthesis
Carbon Monoxide
global change

Fate and transport of antibiotic residues and antibiotic resistance genes following land application of manure waste

Chee-Sanford, J. C., Mackie, R. I., Koike, S., Krapac, I. G., Lin, Y. F., Yannarell, A. C., Maxwell, S. & Aminov, R. I., May 1 2009, In : Journal of Environmental Quality. 38, 3, p. 1086-1108 23 p.

Research output: Contribution to journalReview article

antibiotic resistance
Manures
Antibiotics
antibiotics
manure

FRET and mechanobiology

Wang, Y. & Wang, N., Dec 1 2009, In : Integrative Biology. 1, 10, p. 565-573 9 p.

Research output: Contribution to journalReview article

Biophysics
Fluorescence Resonance Energy Transfer
Biosensing Techniques
Biosensors
Proteins

Imaging engineered tissues using structural and functional optical coherence tomography

Liang, X., Graf, B. W. & Boppart, S. A., Nov 1 2009, In : Journal of Biophotonics. 2, 11, p. 643-655 13 p.

Research output: Contribution to journalReview article

Optical tomography
Optical Coherence Tomography
tomography
Tissue
Imaging techniques

Indirect suppression of photosynthesis on individual leaves by arthropod herbivory

Nabity, P. D., Zavala, J. A. & DeLucia, E. H., Feb 1 2009, In : Annals of botany. 103, 4, p. 655-663 9 p.

Research output: Contribution to journalReview article

arthropods
herbivores
photosynthesis
leaves
image analysis

Industrial biotechnology: Tools and applications

Tang, W. L. & Zhao, H., Dec 1 2009, In : Biotechnology Journal. 4, 12, p. 1725-1739 15 p.

Research output: Contribution to journalReview article

Biotechnology
Synthetic Biology
Industrial Waste
Metabolic Engineering
Protein Engineering

Life-cycle analysis and the ecology of biofuels

Davis, S. C., Anderson-Teixeira, K. J. & Delucia, E. H., Mar 1 2009, In : Trends in Plant Science. 14, 3, p. 140-146 7 p.

Research output: Contribution to journalReview article

life cycle assessment
biofuels
greenhouse gases
ecology
biogeochemistry

Mechanobiology of the skeleton

Turner, C. H., Warden, S. J., Bellido, T., Plotkin, L. I., Kumar, N., Jasiuk, I., Danzig, J. & Robling, A. G., Apr 28 2009, In : Science Signaling. 2, 68, p. pt3

Research output: Contribution to journalReview article

Biophysics
Skeleton
Bone
Bone and Bones
Osteocytes

Methylation, a new epigenetic mark for protein stability

Yang, X. D., Lamb, A. & Chen, L-F., Oct 1 2009, In : Epigenetics. 4, 7, p. 429-433 5 p.

Research output: Contribution to journalReview article

Protein Stability
Epigenomics
Methylation
Lysine
Histones

Molecular dynamics simulations of membrane channels and transporters

Khalili-Araghi, F., Gumbart, J., Wen, P. C., Sotomayor, M., Tajkhorshid, E. & Schulten, K., Apr 1 2009, In : Current Opinion in Structural Biology. 19, 2, p. 128-137 10 p.

Research output: Contribution to journalReview article

Membrane Transport Proteins
Molecular Dynamics Simulation
Ion Channels
Aquaporins
Proteins

Nomenclature for factors of the SLA system, update 2008

Ho, C. S., Lunney, J. K., Ando, A., Rogel-Gaillard, C., Lee, J. H., Schook, L. B. & Smith, D. M., Apr 2009, In : Tissue Antigens. 73, 4, p. 307-315 9 p.

Research output: Contribution to journalReview article

Terminology
Alleles
swine leukocyte antigen
Databases
Major Histocompatibility Complex

Paleoecology meets genetics: Deciphering past vegetational dynamics

Hu, F. S., Hampe, A. & Petit, R. J., Sep 1 2009, In : Frontiers in Ecology and the Environment. 7, 7, p. 371-379 9 p.

Research output: Contribution to journalReview article

paleoecology
genetic analysis
genetic techniques and protocols
climate change
conservation genetics

Programming structure into 3D nanomaterials

Van Gough, D., Juhl, A. T. & Braun, P. V., Jun 1 2009, In : Materials Today. 12, 6, p. 28-35 8 p.

Research output: Contribution to journalReview article

solar energy
energy storage
programming
Nanostructured materials
delivery

Protein dynamics: From molecules, to interactions, to biology

Gruebele, M., Mar 1 2009, In : International journal of molecular sciences. 10, 3, p. 1360-1368 9 p.

Research output: Contribution to journalReview article

biology
proteins
Proteins
Molecules
molecules

Protein engineering in designing tailored enzymes and microorganisms for biofuels production

Wen, F., Nair, N. U. & Zhao, H., Aug 1 2009, In : Current Opinion in Biotechnology. 20, 4, p. 412-419 8 p.

Research output: Contribution to journalReview article

Protein Engineering
Biofuels
Microorganisms
Enzymes
Proteins

Protein-membrane interactions: Blood clotting on nanoscale bilayers

Morrissey, J. H., Pureza, V., Davis-Harrison, R. L., Sligar, S. G., Rienstra, C. M., Kijac, A. Z., Ohkubo, Y. Z. & Tajkhorshid, E., Aug 4 2009, In : Journal of Thrombosis and Haemostasis. 7, SUPPL. 1, p. 169-172 4 p.

Research output: Contribution to journalReview article

Blood Coagulation
Phospholipids
Membrane Proteins
Peptide Hydrolases
Membrane Microdomains

Relational memory and the hippocampus: Representations and methods

Konkel, A. & Cohen, N. J., Dec 1 2009, In : Frontiers in Neuroscience. 3, SEP, Article 2.

Research output: Contribution to journalReview article

Hippocampus
Research
Braconidae
instars
Hymenoptera
larva
larvae

Rising atmospheric carbon dioxide concentration and the future of C 4 crops for food and fuel

Leakey, A., Jul 7 2009, In : Proceedings of the Royal Society B: Biological Sciences. 276, 1666, p. 2333-2343 11 p.

Research output: Contribution to journalReview article

Droughts
energy crops
Photosynthesis
food crops
Carbon Dioxide

Segmental dynamics in polymers: From cold melts to ageing and stressed glasses

Chen, K., Saltzman, E. J. & Schweizer, K. S., Dec 18 2009, In : Journal of Physics Condensed Matter. 21, 50, 503101.

Research output: Contribution to journalReview article

Polymers
Aging of materials
Glass
glass
polymers

Signaling pathways in spermatogonial stem cells and their disruption by toxicants

Lucas, B., Fields, C. J. & Hofmann, M. C., Mar 1 2009, In : Birth Defects Research Part C - Embryo Today: Reviews. 87, 1, p. 35-42 8 p.

Research output: Contribution to journalReview article

Biological Phenomena
Sperm Count
Spermatogenesis
Germ Cells
Nanoparticles
Intellectual property
Defects
Economics
Costs
Industry

Soy isoflavones and virus infections

Andres, A., Donovan, S. M. & Kuhlenschmidt, M. S., Aug 1 2009, In : Journal of Nutritional Biochemistry. 20, 8, p. 563-569 7 p.

Research output: Contribution to journalReview article

Isoflavones
Virus Diseases
Viruses
Flavonoids
Genistein

Sustainability of food, energy and environment with biofuels

Khanna, M., Hochman, G., Rajagopal, D., Sexton, S. & Zilberman, D., Nov 19 2009, In : CAB Reviews: Perspectives in Agriculture, Veterinary Science, Nutrition and Natural Resources. 4, p. 1-10 10 p., 28.

Research output: Contribution to journalReview article

Biofuels
biofuels
biofuel
sustainability
Food

T-cell receptor binding affinities and kinetics: impact on T-cell activity and specificity

Stone, J. D., Chervin, A. S. & Kranz, D. M., Feb 1 2009, In : Immunology. 126, 2, p. 165-176 12 p.

Research output: Contribution to journalReview article

T-Cell Antigen Receptor Specificity
T-Cell Antigen Receptor
Major Histocompatibility Complex
Peptides
T-Lymphocytes

The importance of surface chemistry in mesoporous materials: Lessons from porous silicon biosensors

Kilian, K. A., Böcking, T. & Gooding, J. J., Feb 2 2009, In : Chemical Communications. 6, p. 630-640 11 p.

Research output: Contribution to journalReview article

Mesoporous materials
Porous silicon
Surface chemistry
Biosensors
Photonic crystals

The origin, evolution and structure of the protein world

Caetano-Anollés, G., Wang, M., Caetano-Anollés, D. & Mittenthal, J. E., Feb 1 2009, In : Biochemical Journal. 417, 3, p. 621-637 17 p.

Research output: Contribution to journalReview article

Proteome
Proteins
Protein folding
Prebiotics
Biochemistry

The origin and evolution of modern metabolism

Caetano-Anolles, G., Mainzer, L. S., Gee, H., Caetano-Anollés, D., Kim, H. S. & Mittenthal, J. E., Feb 1 2009, In : International Journal of Biochemistry and Cell Biology. 41, 2, p. 285-297 13 p.

Research output: Contribution to journalReview article

Metabolism
Enzymes
Genomics
Nucleotides
Prebiotics

The parallelization of video processing: From programming models to applications

Lin, D., Huang, X., Nguyen, Q., Blackburn, J., Rodrigues, C., Huang, T. S., Do, M. N., Patel, S. J. & Hwu, W-M. W., Jan 1 2009, In : IEEE Signal Processing Magazine. 26, 6, p. 103-112 10 p.

Research output: Contribution to journalReview article

Video Processing
Parallelization
Programming Model
Digital Video
Processing

The repeatability of behaviour: a meta-analysis

Bell, A. M., Hankison, S. J. & Laskowski, K. L., Apr 1 2009, In : Animal Behaviour. 77, 4, p. 771-783 13 p.

Research output: Contribution to journalReview article

meta-analysis
repeatability
preference behavior
mating behavior
animal behavior

The role of the aryl hydrocarbon receptor in the female reproductive system

Hernández-Ochoa, I., Karman, B. N. & Flaws, J. A., Feb 15 2009, In : Biochemical Pharmacology. 77, 4, p. 547-559 13 p.

Research output: Contribution to journalReview article

Aryl Hydrocarbon Receptors
Fertility
Ligands
Oviducts
Fallopian Tubes

The role of the internet in changing knowledge ecologies

Cope, B. & Kalantzis, M., May 1 2009, In : Arbor. 185, 737, p. 521-530 10 p.

Research output: Contribution to journalReview article

ecology
Internet
university
communication
knowledge-based system

Translation regulation of mRNAs by the fragile X family of proteins through the microRNA pathway

Cheever, A. & Ceman, S., Jan 1 2009, In : RNA Biology. 6, 2, p. 175-178 4 p.

Research output: Contribution to journalReview article

Protein Biosynthesis
MicroRNAs
Proteins
Fragile X Mental Retardation Protein
Phosphorylation

Virology: Making nice with viruses

Stoltz, D. B. & Whitfield, J. B., Feb 13 2009, In : Science. 323, 5916, p. 884-885 2 p.

Research output: Contribution to journalReview article

Virology
Genomics
Viruses
2010

Animal models of osteosarcoma

Fan, T. M., Aug 1 2010, In : Expert Review of Anticancer Therapy. 10, 8, p. 1327-1338 12 p.

Research output: Contribution to journalReview article

Osteosarcoma
Animal Models
Neoplasms
Osteoblasts
Sarcoma

Anisotropic nanocrystal heterostructures: Synthesis and lattice strain

Shim, M. & McDaniel, H., Oct 2010, In : Current Opinion in Solid State and Materials Science. 14, 5, p. 83-94 12 p.

Research output: Contribution to journalReview article

Crystal lattices
Nanocrystals
Heterojunctions
Nanocrystalline materials
Hybrid materials

A novel platform for in situ investigation of cells and tissues under mechanical strain

Ahmed, W. W., Kural, M. H. & Saif, M. T. A., Aug 2010, In : Acta Biomaterialia. 6, 8, p. 2979-2990 12 p.

Research output: Contribution to journalReview article

Tissue
Fibroblasts
Actins
Embryonic Structures
Drosophila