Office of the Vice Chancellor for Research

Research Output 1969 2020

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Letter
2019
Open Access
subjectivity
Diet
Pacific Northwest Coast
Subjectivity

Increasing Diversity in Evolutionary Anthropological Sciences—the IDEAS Program

Malhi, R. S., Antón, S. C. & Fuentes, A., May 1 2019, In : American Anthropologist. 121, 2, p. 478-479 2 p.

Research output: Contribution to journalLetter

Open Access
science
Evolutionary

Misunderstood parameter of NCBI BLAST impacts the correctness of bioinformatics workflows

Shah, N., Nute, M. G., Warnow, T. & Pop, M., May 1 2019, In : Bioinformatics. 35, 9, p. 1613-1614 2 p.

Research output: Contribution to journalLetter

Workflow
Bioinformatics
Computational Biology
Work Flow
Correctness

Non-native plants have greater impacts because of differing per-capita effects and nonlinear abundance–impact curves

Pearse, I. S., Sofaer, H. R., Zaya, D. N. & Spyreas, G. R., Aug 1 2019, In : Ecology Letters. 22, 8, p. 1214-1220 7 p.

Research output: Contribution to journalLetter

biocenosis
temporal variation
plant communities
wetlands
indigenous species

Phenotyping photosynthesis on the limit - a critical examination of RACiR

Taylor, S. H. & Long, S. P., Jan 1 2019, In : The New phytologist. 221, 2, p. 621-624 4 p.

Research output: Contribution to journalLetter

Open Access
Ribulose-Bisphosphate Carboxylase
Photosynthesis
ribulose-bisphosphate carboxylase
global change
photosynthesis

Reply to: fMRI replicability depends upon sufficient individual-level data

Turner, B. O., Santander, T., Paul, E. J., Barbey, A. K. & Miller, M. B., Dec 1 2019, In : Communications Biology. 2, 1, 129.

Research output: Contribution to journalLetter

Open Access
Magnetic Resonance Imaging

Reply to: Brazilian ethanol expansion subject to limitations

Jaiswal, D., De Souza, A. P., Larsen, S., LeBauer, D. S., Miguez, F. E., Sparovek, G., Bollero, G. A., Buckeridge, M. S. & Long, S. P., Mar 1 2019, In : Nature Climate Change. 9, 3, p. 211-212 2 p.

Research output: Contribution to journalLetter

ethanol

Response to the comments of Delclos et al.

Flaws, J. A. & Warner, G. R., Jan 1 2019, In : Toxicological Sciences. 169, 1, p. 3-4 2 p.

Research output: Contribution to journalLetter

Serotonin transporter–ibogaine complexes illuminate mechanisms of inhibition and transport

Coleman, J. A., Yang, D., Zhao, Z., Wen, P. C., Yoshioka, C., Tajkhorshid, E. & Gouaux, E., Jan 1 2019, In : Nature.

Research output: Contribution to journalLetter

Ibogaine
Serotonin Plasma Membrane Transport Proteins
Plasma Membrane Neurotransmitter Transport Proteins
Serotonin
Neurotransmitter Agents

Small-molecule ion channels increase host defences in cystic fibrosis airway epithelia

Muraglia, K. A., Chorghade, R. S., Kim, B. R., Tang, X. X., Shah, V. S., Grillo, A. S., Daniels, P. N., Cioffi, A. G., Karp, P. H., Zhu, L., Welsh, M. J. & Burke, M., Mar 21 2019, In : Nature. 567, 7748, p. 405-408 4 p.

Research output: Contribution to journalLetter

Cystic Fibrosis Transmembrane Conductance Regulator
Ion Channels
Cystic Fibrosis
Amphotericin B
Epithelium
2018

A giant protocluster of galaxies at redshift 5.7

Jiang, L., Wu, J., Bian, F., Chiang, Y. K., Ho, L. C., Shen, Y., Zheng, Z. Y., Bailey, J. I., Blanc, G. A., Crane, J. D., Fan, X., Mateo, M., Olszewski, E. W., Oyarzún, G. A., Wang, R. & Wu, X. B., Dec 1 2018, In : Nature Astronomy. 2, 12, p. 962-966 5 p.

Research output: Contribution to journalLetter

galaxies
universe
sky
emitters
x rays

Ancient herders enriched and restructured African grasslands

Marshall, F., Reid, R. E. B., Goldstein, S., Storozum, M., Wreschnig, A., Hu, L., Kiura, P., Shahack-Gross, R. & Ambrose, S. H., Sep 20 2018, In : Nature. 561, 7723, p. 387-390 4 p.

Research output: Contribution to journalLetter

Soil
Food
Ecosystem
Isoptera
Livestock

Arrival routes of first Americans uncertain

Potter, B. A., Beaudoin, A. B., Haynes, C. V., Holliday, V. T., Holmes, C. E., Ives, J. W., Kelly, R., Llamas, B., Malhi, R. S., Miller, S., Reich, D., Reuther, J. D., Schiffels, S. & Surovell, T., Mar 16 2018, In : Science. 359, 6381, p. 1224-1225 2 p.

Research output: Contribution to journalLetter

Cooperative asymmetric reactions combining photocatalysis and enzymatic catalysis

Litman, Z. C., Wang, Y., Zhao, H. & Hartwig, J. F., Aug 16 2018, In : Nature. 560, 7718, p. 355-359 5 p.

Research output: Contribution to journalLetter

Alkenes
Catalysis
Regeneration
Stereoisomerism
Enzymes

Effect of tissue staining in quantitative phase imaging

Ban, S., Min, E., Ahn, Y., Popescu, G. & Jung, W., Aug 1 2018, In : Journal of Biophotonics. 11, 8, e201700402.

Research output: Contribution to journalLetter

staining
Tissue
Staining and Labeling
Imaging techniques
optical properties

KBase: The United States department of energy systems biology knowledgebase

Arkin, A. P., Cottingham, R. W., Henry, C. S., Harris, N. L., Stevens, R. L., Maslov, S., Dehal, P., Ware, D., Perez, F., Canon, S., Sneddon, M. W., Henderson, M. L., Riehl, W. J., Murphy-Olson, D., Chan, S. Y., Kamimura, R. T., Kumari, S., Drake, M. M., Brettin, T. S., Glass, E. M. & 61 others, Chivian, D., Gunter, D., Weston, D. J., Allen, B. H., Baumohl, J., Best, A. A., Bowen, B., Brenner, S. E., Bun, C. C., Chandonia, J. M., Chia, J. M., Colasanti, R., Conrad, N., Davis, J. J., Davison, B. H., Dejongh, M., Devoid, S., Dietrich, E., Dubchak, I., Edirisinghe, J. N., Fang, G., Faria, J. P., Frybarger, P. M., Gerlach, W., Gerstein, M., Greiner, A., Gurtowski, J., Haun, H. L., He, F., Jain, R., Joachimiak, M. P., Keegan, K. P., Kondo, S., Kumar, V., Land, M. L., Meyer, F., Mills, M., Novichkov, P. S., Oh, T., Olsen, G. J., Olson, R., Parrello, B., Pasternak, S., Pearson, E., Poon, S. S., Price, G. A., Ramakrishnan, S., Ranjan, P., Ronald, P. C., Schatz, M. C., Seaver, S. M. D., Shukla, M., Sutormin, R. A., Syed, M. H., Thomason, J., Tintle, N. L., Wang, D., Xia, F., Yoo, H., Yoo, S. & Yu, D., Jul 6 2018, In : Nature Biotechnology. 36, 7, p. 566-569 4 p.

Research output: Contribution to journalLetter

Database Management Systems
Systems Biology
Knowledge Bases
Computational Biology
Gryllidae
Orthoptera
Insecta
fossils
fossil

Order and polarity in character state transformation models that root the tree of life

Caetano-Anollés, K., Caetano-Anollés, D., Nasir, A., Kim, K. M. & Caetano-Anolles, G., Jun 1 2018, In : Biochimie. 149, p. 135-136 2 p.

Research output: Contribution to journalLetter

Pressure- and heat-induced protein unfolding in bacterial cells: crowding vs. sticking

Chen, T., Dave, K. & Gruebele, M. H. W., Apr 1 2018, In : FEBS Letters. 592, 8, p. 1357-1365 9 p.

Research output: Contribution to journalLetter

Protein Unfolding
Denaturation
Phosphoglycerate Kinase
Hot Temperature
Escherichia coli

Translucent windows: how uncertainty in competitive interactions impacts detection of community pattern

D'Andrea, R., Ostling, A. & O'Dwyer, J. P., Jun 1 2018, In : Ecology Letters. 21, 6, p. 826-835 10 p.

Research output: Contribution to journalLetter

niche
niches
uncertainty
interspecific competition
natural history

Trout in hot water: A call for global action

Muhlfeld, C. C., Dauwalter, D. C., Kovach, R. P., Kershner, J. L., Williams, J. E. & Epifanio, J. M., May 25 2018, In : Science. 360, 6391, p. 866-867 2 p.

Research output: Contribution to journalLetter

Trout
Water
2017

A new leafhopper species of Maiestas Distant (Hemiptera: Cicadellidae: Deltocephalinae: Deltocephalini) from Thailand

Duan, Y. & Dietrich, C. H., Mar 24 2017, In : Zootaxa. 4247, 1, p. 61-64 4 p.

Research output: Contribution to journalLetter

Auchenorrhyncha
Hemiptera
Cicadellidae
Thailand
new species

Bibliometrics: Seven LIGO authors not accounted for

Twidale, M. B., Nov 9 2017, In : Nature. 551, 7679, 1 p.

Research output: Contribution to journalLetter

HM2-phage resistant solventogenic Clostridium saccharoperbutylacetonicum N1-4 shows increased exopolysaccharide production

Liu, X., Turchi, B., Mok, K. C., Taga, M. E. & Miller, M. J., Oct 1 2017, In : FEMS Microbiology Letters. 364, 19, fnx191.

Research output: Contribution to journalLetter

Clostridium
Bacteriophages
Fermentation
Adsorption
Genome Size

Is the Accuracy of Density Functional Theory for Atomization Energies and Densities in Bonding Regions Correlated?

Brorsen, K. R., Yang, Y., Pak, M. V. & Hammes-Schiffer, S., May 4 2017, In : Journal of Physical Chemistry Letters. 8, 9, p. 2076-2081 6 p.

Research output: Contribution to journalLetter

atomizing
Atomization
functionals
Density functional theory
Carrier concentration

New replacement name for Tricella Catalano & Dietrich, 2017 (Hemiptera: Cicadellidae: Typhlocybinae)

Catalano, M. I. & Dietrich, C. H., Oct 31 2017, In : Zootaxa. 4341, 2, 1 p.

Research output: Contribution to journalLetter

Cicadellidae
Ecuador
Hemiptera
replacement
China

PacBio Sequencing Reveals Transposable Elements as a Key Contributor to Genomic Plasticity and Virulence Variation in Magnaporthe oryzae

Bao, J., Chen, M., Zhong, Z., Tang, W., Lin, L., Zhang, X., Jiang, H., Zhang, D., Miao, C., Tang, H., Zhang, J., Lu, G., Ming, R. R., Norvienyeku, J., Wang, B. & Wang, Z., Nov 6 2017, In : Molecular Plant. 10, 11, p. 1465-1468 4 p.

Research output: Contribution to journalLetter

Magnaporthe
Magnaporthe oryzae
DNA Transposable Elements
transposons
Virulence

Parallel folding pathways of Fip35 WW domain explained by infrared spectra and their computer simulation

Zanetti-Polzi, L., Davis, C. M., Gruebele, M., Dyer, R. B., Amadei, A. & Daidone, I., Oct 1 2017, In : FEBS Letters. 591, 20, p. 3265-3275 11 p.

Research output: Contribution to journalLetter

Amides
Computer Simulation
Infrared radiation
Computer simulation
Molecular Dynamics Simulation

Pertinent issue, flawed methods

Ramprasad, V., Ribot, J. C. & Chhatre, A., Dec 9 2017, In : Economic and Political Weekly. 52, 49, p. 4-5 2 p.

Research output: Contribution to journalLetter

Reply to “Discussion on the Fracture mechanics interpretation of the scratch test by Akono et al.”

Akono, A-T., Jun 1 2017, In : Engineering Fracture Mechanics. 178, p. 14-21 8 p.

Research output: Contribution to journalLetter

Fracture mechanics

Saturated absorption competition microscopy

Zhao, G., Kabir, M. M., Toussaint, K. C., Kuang, C., Zheng, C., Yu, Z. & Liu, X., Jun 20 2017, In : Optica. 4, 6, p. 633-636 4 p.

Research output: Contribution to journalLetter

Microscopic examination
microscopy
Imaging techniques
Diffraction
Fluorescence
2016

3D implementation of the symbol nomenclature for graphical representation of glycans

Thieker, D. F., Hadden, J. A., Schulten, K. J. & Woods, R. J., Aug 1 2016, In : Glycobiology. 26, 8, p. 786-787 2 p.

Research output: Contribution to journalLetter

A new species of the leafhopper genus Matsumuratettix Metcalf (Hemiptera: Cicadellidae: Deltocephalinae: Deltocephalini) from Thailand

Duan, Y., Dietrich, C. H. & Zhang, Y., Feb 12 2016, In : Zootaxa. 4079, 3, p. 397-400 4 p.

Research output: Contribution to journalLetter

Animal Distribution
Animal Structures
Hemiptera
Organ Size
Body Size

Compressive mapping for next-generation sequencing

Yorukoglu, D., Yu, Y. W., Peng, J. & Berger, B., Apr 7 2016, In : Nature Biotechnology. 34, 4, p. 374-376 3 p.

Research output: Contribution to journalLetter

Mice (computer peripherals)
High-Throughput Nucleotide Sequencing
Sequence Alignment
Chromosome Mapping
Computational Biology

Deposition of organic nitrogen

Li, Y., Schichtel, B. A., Walker, J. T., Schwede, D. B., Chen, X., Lehmann, C. MB., Puchalski, M. A., Gay, D. A. & Collett, J. L., Aug 2 2016, In : Proceedings of the National Academy of Sciences of the United States of America. 113, 31, p. E4435

Research output: Contribution to journalLetter

Evaluation of common disinfectants effective against Ophidiomyces ophiodiicola, the causative agent of snake fungal disease

Rzadkowska, M., Allender, M. C., O’Dell, M. & Maddox, C. W., Jul 1 2016, In : Journal of Wildlife Diseases. 52, 3, p. 759-762 4 p.

Research output: Contribution to journalLetter

fungal disease
disinfectants
snake
snakes
chlorhexidine

Exploring new features of high-bandwidth memory for GPUs

Li, B., Song, C., Wei, J., Ahn, J. H. & Kim, N. S., Jan 1 2016, In : IEICE Electronics Express. 13, 14

Research output: Contribution to journalLetter

amoeba
bandwidth
Bandwidth
Data storage equipment
Electric power utilization

On the importance of US deposition of nitrogen dioxide, coarse particle nitrate, and organic nitrogen

Li, Y., Schichtel, B. A., Walker, J. T., Schwede, D. B., Chen, X., Lehmann, C. MB., Puchalski, M. A., Gay, D. A. & Collett, J. L., Jun 28 2016, In : Proceedings of the National Academy of Sciences of the United States of America. 113, 26, p. E3592-E3593

Research output: Contribution to journalLetter

Nitrogen Oxides
Nitrogen Dioxide
Nitrates
Nitrogen

Solar research not finished

Kurtz, S., Atwater, H., Rockett, A., Buonassisi, T., Honsberg, C. & Benner, J., Feb 26 2016, In : Nature Photonics. 10, 3, p. 141-142 2 p.

Research output: Contribution to journalLetter

Space- and intensity-constrained reconstruction for compressed ultrafast photography

Zhu, L., Chen, Y., Liang, J., Xu, Q., Gao, L., Ma, C. & Wang, L. V., Jul 20 2016, In : Optica. 3, 7, p. 694-697 4 p.

Research output: Contribution to journalLetter

photography
Photography
CCD cameras
Cameras
Image quality

The type specimen and generic placement of Tridactylus galla Saussure, 1895 (Orthoptera: Caelifera: Tridactylidae)

Heads, S. W. & Hollier, J., Nov 15 2016, In : Zootaxa. 4193, 1, p. 195-196 2 p.

Research output: Contribution to journalLetter

Tridactylidae
Orthoptera
Animal Structures
Organ Size
type specimen

Two new species of the genus Kabakra Dworakowska from Thailand (Hemiptera: Cicadellidae: Typhlocybinae)

Song, Y. H., Li, Z. Z. & Dietrich, C. H., Mar 15 2016, In : Zootaxa. 4092, 1, p. 145-150 6 p.

Research output: Contribution to journalLetter

2015
Peptidyl Transferases
ribosomes
Ribosomes
transferases
accretion

Anthropological Genetics

Kitchen, A., Non, A. L., Gravlee, C. C., Mulligan, C. J., Warinner, C., Lewis, C. M., Bankoff, R. J., Randrianatoandro, H. D. D., Perry, G. H., Malhi, R. S., Bader, A. C. & Raff, J., Dec 1 2015, In : American Anthropologist. 117, 4, p. 736-737 2 p.

Research output: Contribution to journalLetter

Engaging Native Americans in Genomics Research

Malhi, R. S. & Bader, A. C., Dec 1 2015, In : American Anthropologist. 117, 4, p. 743-744 2 p.

Research output: Contribution to journalLetter

Native Americans

Quality score compression improves genotyping accuracy

Yu, Y. W., Yorukoglu, D., Peng, J. & Berger, B., Jan 1 2015, In : Nature Biotechnology. 33, 3, p. 240-243 4 p.

Research output: Contribution to journalLetter

Genotyping Techniques
Data Compression
High-Throughput Nucleotide Sequencing
Data compression
ROC Curve

Relocation risky for bumblebee colonies

Lozier, J. D., Cameron, S. A., Duennes, M. A., Strange, J. P., Williams, P. H., Goulson, D., Brown, M. J. F., Morales, C. & Jepsen, S., Oct 16 2015, In : Science. 350, 6258, p. 286-287 2 p.

Research output: Contribution to journalLetter

Second letter to editor in response to author response published in J. Air Waste Manage. Assoc. 64: 1218–1220

Gurney, K. R., Huang, J., Coltin, K. & Li, B., Jan 1 2015, In : Journal of the Air and Waste Management Association. 65, 3, p. 245-246 2 p.

Research output: Contribution to journalLetter

Power Plants
Air Pollutants
Coal
Environmental Monitoring
environmental monitoring

The rs1049353 polymorphism in the CNR1 gene interacts with childhood abuse to predict posttraumatic threat symptoms

Mota, N., Sumner, J. A., Lowe, S. R., Neumeister, A., Uddin, E. M., Aiello, A. E., Wildman, D., Galea, S., Koenen, K. C. & Pietrzak, R. H., Dec 1 2015, In : Journal of Clinical Psychiatry. 76, 12, p. e1622-e1623

Research output: Contribution to journalLetter

2014

Author response

Mishra, S., Verhalen, B., Stein, R. A., Wen, P. C., Tajkhorshid, E. & Mchaourab, H. S., May 16 2014, In : eLife. 2014, 3, e02740.

Research output: Contribution to journalLetter