Office of the Vice Chancellor for Research and Innovation

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2020

An X-ray detection of star formation in a highly magnified giant arc

Bayliss, M. B., McDonald, M., Sharon, K., Gladders, M. D., Florian, M., Chisholm, J., Dahle, H., Mahler, G., Paterno-Mahler, R., Rigby, J. R., Rivera-Thorsen, E., Whitaker, K. E., Allen, S., Benson, B. A., Bleem, L. E., Brodwin, M., Canning, R. E. A., Chiu, I., Hlavacek-Larrondo, J., Khullar, G. & 2 others, Reichardt, C. & Vieira, J. D., Feb 1 2020, In : Nature Astronomy. 4, 2, p. 159-166 8 p.

Research output: Contribution to journalLetter

Electrical recognition of the twenty proteinogenic amino acids using an aerolysin nanopore

Ouldali, H., Sarthak, K., Ensslen, T., Piguet, F., Manivet, P., Pelta, J., Behrends, J. C., Aksimentiev, A. & Oukhaled, A., Feb 1 2020, In : Nature Biotechnology. 38, 2, p. 176-181 6 p.

Research output: Contribution to journalLetter

From the Ground to Space: Using Solar-Induced Chlorophyll Fluorescence to Estimate Crop Productivity

He, L., Magney, T., Dutta, D., Yin, Y., Köhler, P., Grossmann, K., Stutz, J., Dold, C., Hatfield, J., Guan, K., Peng, B. & Frankenberg, C., Apr 16 2020, In : Geophysical Research Letters. 47, 7, e2020GL087474.

Research output: Contribution to journalLetter

2019
Open Access

Implementation of permeation rules leads to a FabI inhibitor with activity against Gram-negative pathogens

Parker, E. N., Drown, B. S., Geddes, E. J., Lee, H. Y., Ismail, N., Lau, G. W. & Hergenrother, P. J., Nov 18 2019, In : Nature Microbiology.

Research output: Contribution to journalLetter

Increasing Diversity in Evolutionary Anthropological Sciences—the IDEAS Program

Malhi, R. S., Antón, S. C. & Fuentes, A., May 2019, In : American Anthropologist. 121, 2, p. 478-479 2 p.

Research output: Contribution to journalLetter

Open Access

Measuring transcription at a single gene copy reveals hidden drivers of bacterial individuality

Wang, M., Zhang, J., Xu, H. & Golding, I., Dec 1 2019, In : Nature Microbiology. 4, 12, p. 2118-2127 10 p.

Research output: Contribution to journalLetter

Misunderstood parameter of NCBI BLAST impacts the correctness of bioinformatics workflows

Shah, N., Nute, M. G., Warnow, T. & Pop, M., May 1 2019, In : Bioinformatics. 35, 9, p. 1613-1614 2 p.

Research output: Contribution to journalLetter

Non-native plants have greater impacts because of differing per-capita effects and nonlinear abundance–impact curves

Pearse, I. S., Sofaer, H. R., Zaya, D. N. & Spyreas, G., Aug 2019, In : Ecology Letters. 22, 8, p. 1214-1220 7 p.

Research output: Contribution to journalLetter

Phenotyping photosynthesis on the limit - a critical examination of RACiR

Taylor, S. H. & Long, S. P., Jan 1 2019, In : The New phytologist. 221, 2, p. 621-624 4 p.

Research output: Contribution to journalLetter

Open Access

Reply to: Brazilian ethanol expansion subject to limitations

Jaiswal, D., De Souza, A. P., Larsen, S., LeBauer, D. S., Miguez, F. E., Sparovek, G., Bollero, G., Buckeridge, M. S. & Long, S. P., Mar 1 2019, In : Nature Climate Change. 9, 3, p. 211-212 2 p.

Research output: Contribution to journalLetter

Reply to: fMRI replicability depends upon sufficient individual-level data

Turner, B. O., Santander, T., Paul, E. J., Barbey, A. K. & Miller, M. B., Dec 1 2019, In : Communications biology. 2, 1, 129.

Research output: Contribution to journalLetter

Open Access

Response to the comments of Delclos et al.

Flaws, J. A. & Warner, G. R., Jan 1 2019, In : Toxicological Sciences. 169, 1, p. 3-4 2 p.

Research output: Contribution to journalLetter

The first record of a wild hypopigmented oriental small-clawed otter (Aonyx cinereus)

Allen, M. L., Sibarani, M. C. & Utoyo, L., 2019, In : International Journal of Tropical Ecology. 21, 201904.

Research output: Contribution to journalLetter

Open Access

The intrinsically labeled protein approach is the preferred method to quantify the release of dietary protein-derived amino acids into the circulation

Trommelen, J., Holwerda, A. M., Nyakayiru, J., Gorissen, S. H. M., Rooyackers, O., Burd, N. A., Boirie, Y. & van Loon, L. J. C., Sep 2019, In : American Journal of Physiology - Endocrinology and Metabolism. 317, 3, p. E433-E434

Research output: Contribution to journalLetter

2018

A giant protocluster of galaxies at redshift 5.7

Jiang, L., Wu, J., Bian, F., Chiang, Y. K., Ho, L. C., Shen, Y., Zheng, Z. Y., Bailey, J. I., Blanc, G. A., Crane, J. D., Fan, X., Mateo, M., Olszewski, E. W., Oyarzún, G. A., Wang, R. & Wu, X. B., Dec 1 2018, In : Nature Astronomy. 2, 12, p. 962-966 5 p.

Research output: Contribution to journalLetter

Arrival routes of first Americans uncertain

Potter, B. A., Beaudoin, A. B., Haynes, C. V., Holliday, V. T., Holmes, C. E., Ives, J. W., Kelly, R., Llamas, B., Malhi, R., Miller, S., Reich, D., Reuther, J. D., Schiffels, S. & Surovell, T., Mar 16 2018, In : Science. 359, 6381, p. 1224-1225 2 p.

Research output: Contribution to journalLetter

KBase: The United States department of energy systems biology knowledgebase

Arkin, A. P., Cottingham, R. W., Henry, C. S., Harris, N. L., Stevens, R. L., Maslov, S., Dehal, P., Ware, D., Perez, F., Canon, S., Sneddon, M. W., Henderson, M. L., Riehl, W. J., Murphy-Olson, D., Chan, S. Y., Kamimura, R. T., Kumari, S., Drake, M. M., Brettin, T. S., Glass, E. M. & 61 others, Chivian, D., Gunter, D., Weston, D. J., Allen, B. H., Baumohl, J., Best, A. A., Bowen, B., Brenner, S. E., Bun, C. C., Chandonia, J. M., Chia, J. M., Colasanti, R., Conrad, N., Davis, J. J., Davison, B. H., Dejongh, M., Devoid, S., Dietrich, E., Dubchak, I., Edirisinghe, J. N., Fang, G., Faria, J. P., Frybarger, P. M., Gerlach, W., Gerstein, M., Greiner, A., Gurtowski, J., Haun, H. L., He, F., Jain, R., Joachimiak, M. P., Keegan, K. P., Kondo, S., Kumar, V., Land, M. L., Meyer, F., Mills, M., Novichkov, P. S., Oh, T., Olsen, G. J., Olson, R., Parrello, B., Pasternak, S., Pearson, E., Poon, S. S., Price, G. A., Ramakrishnan, S., Ranjan, P., Ronald, P. C., Schatz, M. C., Seaver, S. M. D., Shukla, M., Sutormin, R. A., Syed, M. H., Thomason, J., Tintle, N. L., Wang, D., Xia, F., Yoo, H., Yoo, S. & Yu, D., Jul 6 2018, In : Nature Biotechnology. 36, 7, p. 566-569 4 p.

Research output: Contribution to journalLetter

Pressure- and heat-induced protein unfolding in bacterial cells: crowding vs. sticking

Chen, T., Dave, K. & Gruebele, M., Apr 2018, In : FEBS Letters. 592, 8, p. 1357-1365 9 p.

Research output: Contribution to journalLetter

Translucent windows: how uncertainty in competitive interactions impacts detection of community pattern

D'Andrea, R., Ostling, A. & O'Dwyer, J. P., Jun 2018, In : Ecology Letters. 21, 6, p. 826-835 10 p.

Research output: Contribution to journalLetter

Trout in hot water: A call for global action

Muhlfeld, C. C., Dauwalter, D. C., Kovach, R. P., Kershner, J. L., Williams, J. E. & Epifanio, J., May 25 2018, In : Science. 360, 6391, p. 866-867 2 p.

Research output: Contribution to journalLetter

2017

Bibliometrics: Seven LIGO authors not accounted for

Twidale, M., Nov 9 2017, In : Nature. 551, 7679, 1 p.

Research output: Contribution to journalLetter

HM2-phage resistant solventogenic Clostridium saccharoperbutylacetonicum N1-4 shows increased exopolysaccharide production

Liu, X., Turchi, B., Mok, K. C., Taga, M. E. & Miller, M. J., Oct 1 2017, In : FEMS microbiology letters. 364, 19, fnx191.

Research output: Contribution to journalLetter

Is the Accuracy of Density Functional Theory for Atomization Energies and Densities in Bonding Regions Correlated?

Brorsen, K. R., Yang, Y., Pak, M. V. & Hammes-Schiffer, S., May 4 2017, In : Journal of Physical Chemistry Letters. 8, 9, p. 2076-2081 6 p.

Research output: Contribution to journalLetter

New replacement name for Tricella Catalano & Dietrich, 2017 (Hemiptera: Cicadellidae: Typhlocybinae)

Catalano, M. I. & Dietrich, C. H., Oct 31 2017, In : Zootaxa. 4341, 2, p. 271--271 1 p.

Research output: Contribution to journalLetter

PacBio Sequencing Reveals Transposable Elements as a Key Contributor to Genomic Plasticity and Virulence Variation in Magnaporthe oryzae

Bao, J., Chen, M., Zhong, Z., Tang, W., Lin, L., Zhang, X., Jiang, H., Zhang, D., Miao, C., Tang, H., Zhang, J., Lu, G., Ming, R., Norvienyeku, J., Wang, B. & Wang, Z., Nov 6 2017, In : Molecular Plant. 10, 11, p. 1465-1468 4 p.

Research output: Contribution to journalLetter

Parallel folding pathways of Fip35 WW domain explained by infrared spectra and their computer simulation

Zanetti-Polzi, L., Davis, C. M., Gruebele, M., Dyer, R. B., Amadei, A. & Daidone, I., Oct 2017, In : FEBS Letters. 591, 20, p. 3265-3275 11 p.

Research output: Contribution to journalLetter

Pertinent issue, flawed methods

Ramprasad, V., Ribot, J. & Chhatre, A., Dec 9 2017, In : Economic and Political Weekly. 52, 49, p. 4-5 2 p.

Research output: Contribution to journalLetter

Reply to “Discussion on the Fracture mechanics interpretation of the scratch test by Akono et al.”

Akono, A-T., Jun 1 2017, In : Engineering Fracture Mechanics. 178, p. 14-21 8 p.

Research output: Contribution to journalLetter

Saturated absorption competition microscopy

Zhao, G., Kabir, M. M., Toussaint, K. C., Kuang, C., Zheng, C., Yu, Z. & Liu, X., Jun 20 2017, In : Optica. 4, 6, p. 633-636 4 p.

Research output: Contribution to journalLetter

2016

3D implementation of the symbol nomenclature for graphical representation of glycans

Thieker, D. F., Hadden, J. A., Schulten, K. & Woods, R. J., Aug 1 2016, In : Glycobiology. 26, 8, p. 786-787 2 p.

Research output: Contribution to journalLetter

Are There Really Syntactic Complexity Effects in Sentence Production? A Reply to Scontras et al. (2015)

Macdonald, M. C., Montag, J. L. & Gennari, S. P., Mar 1 2016, In : Cognitive Science. 40, 2, p. 513-518 6 p.

Research output: Contribution to journalLetter

Compressive mapping for next-generation sequencing

Yorukoglu, D., Yu, Y. W., Peng, J. & Berger, B., Apr 7 2016, In : Nature Biotechnology. 34, 4, p. 374-376 3 p.

Research output: Contribution to journalLetter

Deposition of organic nitrogen

Li, Y., Schichtel, B. A., Walker, J. T., Schwede, D. B., Chen, X., Lehmann, C. M. B., Puchalski, M. A., Gay, D. A. & Collett, J. L., Aug 2 2016, In : Proceedings of the National Academy of Sciences of the United States of America. 113, 31, p. E4435

Research output: Contribution to journalLetter

Evaluation of common disinfectants effective against Ophidiomyces ophiodiicola, the causative agent of snake fungal disease

Rzadkowska, M., Allender, M. C., O’Dell, M. & Maddox, C. W., Jul 2016, In : Journal of Wildlife Diseases. 52, 3, p. 759-762 4 p.

Research output: Contribution to journalLetter

Last Word on Viewpont: On the rigorous study of exercise adaptations: Why mRNA might not be enough?

Miller, B. F., Konopka, A. R. & Hamilton, K. L., Aug 2016, In : Journal of Applied Physiology. 121, 2, 1 p.

Research output: Contribution to journalLetter

On the importance of US deposition of nitrogen dioxide, coarse particle nitrate, and organic nitrogen

Li, Y., Schichtel, B. A., Walker, J. T., Schwede, D. B., Chen, X., Lehmann, C. M. B., Puchalski, M. A., Gay, D. A. & Collett, J. L., Jun 28 2016, In : Proceedings of the National Academy of Sciences of the United States of America. 113, 26, p. E3592-E3593

Research output: Contribution to journalLetter

Polarization vision seldom increases the sighting distance of silvery fish

Johnsen, S., Gagnon, Y. L., Marshall, N. J., Cronin, T. W., Gruev, V. & Powell, S., Aug 22 2016, In : Current Biology. 26, 16, p. R752-R754

Research output: Contribution to journalLetter

Solar research not finished

Kurtz, S., Atwater, H., Rockett, A., Buonassisi, T., Honsberg, C. & Benner, J., Feb 26 2016, In : Nature Photonics. 10, 3, p. 141-142 2 p.

Research output: Contribution to journalLetter

Space- and intensity-constrained reconstruction for compressed ultrafast photography

Zhu, L., Chen, Y., Liang, J., Xu, Q., Gao, L., Ma, C. & Wang, L. V., Jul 20 2016, In : Optica. 3, 7, p. 694-697 4 p.

Research output: Contribution to journalLetter

Two new species of the genus Kabakra Dworakowska from Thailand (Hemiptera: Cicadellidae: Typhlocybinae)

Song, Y. H., Li, Z. Z. & Dietrich, C. H., Mar 15 2016, In : Zootaxa. 4092, 1, p. 145-150 6 p.

Research output: Contribution to journalLetter

2015

Anthropological Genetics

Kitchen, A., Non, A. L., Gravlee, C. C., Mulligan, C. J., Warinner, C., Lewis, C. M., Bankoff, R. J., Randrianatoandro, H. D. D., Perry, G. H., Malhi, R. S., Bader, A. C. & Raff, J., Dec 1 2015, In : American Anthropologist. 117, 4, p. 736-737 2 p.

Research output: Contribution to journalLetter

Engaging Native Americans in Genomics Research

Malhi, R. S. & Bader, A. C., Dec 1 2015, In : American Anthropologist. 117, 4, p. 743-744 2 p.

Research output: Contribution to journalLetter

Quality score compression improves genotyping accuracy

Yu, Y. W., Yorukoglu, D., Peng, J. & Berger, B., Feb 2015, In : Nature Biotechnology. 33, 3, p. 240-243 4 p.

Research output: Contribution to journalLetter

Relocation risky for bumblebee colonies

Lozier, J. D., Cameron, S. A., Duennes, M. A., Strange, J. P., Williams, P. H., Goulson, D., Brown, M. J. F., Morales, C. & Jepsen, S., Oct 16 2015, In : Science. 350, 6258, p. 286-287 2 p.

Research output: Contribution to journalLetter

Second letter to editor in response to author response published in J. Air Waste Manage. Assoc. 64: 1218–1220

Gurney, K. R., Huang, J., Coltin, K. & Li, B., Jan 1 2015, In : Journal of the Air and Waste Management Association. 65, 3, p. 245-246 2 p.

Research output: Contribution to journalLetter

The rs1049353 polymorphism in the CNR1 gene interacts with childhood abuse to predict posttraumatic threat symptoms

Mota, N., Sumner, J. A., Lowe, S. R., Neumeister, A., Uddin, M., Aiello, A. E., Wildman, D. E., Galea, S., Koenen, K. C. & Pietrzak, R. H., Dec 2015, In : Journal of Clinical Psychiatry. 76, 12, p. e1622-e1623

Research output: Contribution to journalLetter