Office of the Vice Chancellor for Research and Innovation

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2020

FastMulRFS: fast and accurate species tree estimation under generic gene duplication and loss models

Molloy, E. K. & Warnow, T., Jul 1 2020, In : Bioinformatics (Oxford, England). 36, 1, p. i57-i65

Research output: Contribution to journalArticle

Open Access

Feedback Between Reservoir Operation and Floodplain Development: Implications for Reservoir Benefits and Beneficiaries

Wallington, K. & Cai, X., Apr 1 2020, In : Water Resources Research. 56, 4, e24524.

Research output: Contribution to journalArticle

Female-female aggression and male responses to the two colour morphs of female common cuckoos

Moskát, C., Hauber, M. E., Růžičková, J., Marton, A., Bán, M. & Elek, Z., Aug 1 2020, In : Science of Nature. 107, 4, 28.

Research output: Contribution to journalArticle

Open Access

FFT, FMM, and multigrid on the road to exascale: Performance challenges and opportunities

Ibeid, H., Olson, L. & Gropp, W., Feb 2020, In : Journal of Parallel and Distributed Computing. 136, p. 63-74 12 p.

Research output: Contribution to journalArticle

Field-emission plasma enhancement of H2-O2 micro-combustion

MacKay, K. K., Johnson, H. T. & Freund, J. B., Apr 2020, In : Plasma Sources Science and Technology. 29, 4, 045014.

Research output: Contribution to journalArticle

Field Productivities of Napier Grass for Production of Sugars and Ethanol

Dien, B. S., Anderson, W. F., Cheng, M. H., Knoll, J. E., Lamb, M., O'Bryan, P. J., Singh, V., Sorensen, R. B., Strickland, T. C. & Slininger, P. J., Feb 3 2020, In : ACS Sustainable Chemistry and Engineering. 8, 4, p. 2052-2060 9 p.

Research output: Contribution to journalArticle

Field storage of water samples affects measured environmental DNA concentration and detection

Curtis, A. N., Larson, E. R. & Davis, M. A., 2020, (Accepted/In press) In : Limnology.

Research output: Contribution to journalArticle

Field trials to detect drainage pipe networks using thermal and RGB data from unmanned aircraft

Kratt, C. B., Woo, D. K., Johnson, K. N., Haagsma, M., Kumar, P., Selker, J. & Tyler, S., Feb 28 2020, In : Agricultural Water Management. 229, 105895.

Research output: Contribution to journalArticle

Fine-tuning the regulation of Cas9 expression levels for efficient CRISPR-Cas9 mediated recombination in Streptomyces

Ye, S., Enghiad, B., Zhao, H. & Takano, E., May 1 2020, In : Journal of Industrial Microbiology and Biotechnology. 47, 4-5, p. 413-423 11 p.

Research output: Contribution to journalArticle

Open Access

FingerprintContacts: Predicting Alternative Conformations of Proteins from Coevolution

Feng, J. & Shukla, D., May 7 2020, In : Journal of Physical Chemistry B. 124, 18, p. 3605-3615 11 p.

Research output: Contribution to journalArticle

Finite-temperature many-body perturbation theory in the canonical ensemble

Jha, P. K. & Hirata, S., Feb 2020, In : Physical Review E. 101, 2, 022106.

Research output: Contribution to journalArticle

Finite-temperature many-body perturbation theory in the grand canonical ensemble

Hirata, S. & Jha, P. K., Jul 7 2020, In : Journal of Chemical Physics. 153, 1, 014103.

Research output: Contribution to journalArticle

Open Access

Fitting different visual models to behavioral patterns of parasitic egg rejection along a natural egg color gradient in a cavity-nesting host species

Manna, T. J., Hanley, D., Honza, M., Capek, M., Rutila, J., Samaš, P., Abolins-Abols, M. & Hauber, M. E., Feb 2020, In : Vision Research. 167, p. 54-59 6 p.

Research output: Contribution to journalArticle

Fluctuations of anisotropic flow in Pb+Pb collisions at √sNN = 5.02 TeV with the ATLAS detector

The ATLAS Collaboration , Jan 1 2020, In : Journal of High Energy Physics. 2020, 1, 51.

Research output: Contribution to journalArticle

Open Access

Fluidity and elasticity form a concise set of viscoelastic biomarkers for breast cancer diagnosis based on Kelvin–Voigt fractional derivative modeling

Zhang, H., Guo, Y., Zhou, Y., Zhu, H., Wu, P., Wang, K., Ruan, L., Wan, M. & Insana, M. F., 2020, (Accepted/In press) In : Biomechanics and Modeling in Mechanobiology.

Research output: Contribution to journalArticle

Fluoroquinolone exposure in utero did not affect articular cartilage of resulting foals

Ellerbrock, R. E., Canisso, I. F., Larsen, R. J., Garrett, K. S., Stewart, M. C., Herzog, K. K., Kersh, M. E., Moshage, S. G., Podico, G., Lima, F. & Childs, B. A., 2020, (Accepted/In press) In : Equine veterinary journal.

Research output: Contribution to journalArticle

Following the edge of the flood: use of shallow-water habitat by larval silver carp Hypophthalmichthys molitrix in the upper Mississippi river system

Chick, J. H., Colaninno, C. E., Beyer, A. M., Brown, K. B., Dopson, C. T., Enzerink, A. O., Goesmann, S. R., Higgins, T., Knutzen, N. Q., Laute, E. N., Long, P. M., Ottenfeld, P. L., Uehling, A. T., Ward, L. C., Maxson, K. A., Ratcliff, E. N., Lubinski, B. J. & Gittinger, E. J., Jan 1 2020, In : Journal of Freshwater Ecology. 35, 1, p. 95-104 10 p.

Research output: Contribution to journalArticle

Open Access

Force-induced gene up-regulation does not follow the weak power law but depends on H3K9 demethylation

Sun, J., Chen, J., Mohagheghian, E. & Wang, N., Apr 1 2020, In : Science Advances. 6, 14

Research output: Contribution to journalArticle

Open Access

Foveated holographic near-eye 3D display

Chang, C., Cui, W. & Gao, L., Jan 20 2020, In : Optics Express. 28, 2, p. 1345-1356 12 p.

Research output: Contribution to journalArticle

Fracture of beams with random field properties: Fractal and Hurst effects

Laudani, R. & Ostoja-Starzewski, M., May 15 2020, In : International Journal of Solids and Structures. 191-192, p. 243-253 11 p.

Research output: Contribution to journalArticle

Frequent mastery testing with second-chance exams leads to enhanced student learning in undergraduate engineering

Morphew, J. W., Silva, M., Herman, G. & West, M., Jan 1 2020, In : Applied Cognitive Psychology. 34, 1, p. 168-181 14 p.

Research output: Contribution to journalArticle

Frontal polymerization of unidirectional carbon-fiber-reinforced composites

Goli, E., Parikh, N. A., Yourdkhani, M., Hibbard, N. G., Moore, J. S., Sottos, N. R. & Geubelle, P. H., Mar 2020, In : Composites Part A: Applied Science and Manufacturing. 130, 105689.

Research output: Contribution to journalArticle

Frontal vs. bulk polymerization of fiber-reinforced polymer-matrix composites

Vyas, S., Zhang, X., Goli, E. & Geubelle, P. H., Sep 29 2020, In : Composites Science and Technology. 198, 108303.

Research output: Contribution to journalArticle

Functional DNA Regulated CRISPR-Cas12a Sensors for Point-of-Care Diagnostics of Non-Nucleic-Acid Targets

Xiong, Y., Zhang, J., Yang, Z., Mou, Q., Ma, Y., Xiong, Y. & Lu, Y., Jan 8 2020, In : Journal of the American Chemical Society. 142, 1, p. 207-213 7 p.

Research output: Contribution to journalArticle

Functional interactions between posttranslationally modified amino acids of methyl-coenzyme M reductase in Methanosarcina acetivorans

Nayak, D. D., Liu, A., Agrawal, N., Rodriguez-Carerro, R., Dong, S. H., Mitchell, D. A., Nair, S. K. & Metcalf, W. W., Feb 2020, In : PLoS biology. 18, 2, e3000507.

Research output: Contribution to journalArticle

Open Access

Fundamental electro-optic limitations of thin-film lithium niobate microring modulators

Bahadori, M., Goddard, L. L. & Gong, S., Apr 27 2020, In : Optics Express. 28, 9, p. 13731-13749 19 p.

Research output: Contribution to journalArticle

GABAC: An arithmetic coding solution for genomic data

Voges, J., Paridaens, T., Müntefering, F., Mainzer, L. S., Bliss, B., Yang, M., Ochoa, I., Fostier, J., Ostermann, J., Hernaez, M. & Hancock, J., Apr 1 2020, In : Bioinformatics. 36, 7, p. 2275-2277 3 p.

Research output: Contribution to journalArticle

Open Access

GAPSPLIT: Efficient random sampling for non-convex constraint-based models

Keaty, T. C., Keaty, T. C., Jensen, P. A., Jensen, P. A. & Jensen, P. A., Apr 15 2020, In : Bioinformatics. 36, 8, p. 2623-2625 3 p.

Research output: Contribution to journalArticle

Gaussian process regression and conditional polynomial chaos for parameter estimation

Li, J. & Tartakovsky, A. M., Sep 1 2020, In : Journal of Computational Physics. 416, 109520.

Research output: Contribution to journalArticle

GDF15 mediates the effects of metformin on body weight and energy balance

Coll, A. P., Chen, M., Taskar, P., Rimmington, D., Patel, S., Tadross, J. A., Cimino, I., Yang, M., Welsh, P., Virtue, S., Goldspink, D. A., Miedzybrodzka, E. L., Konopka, A. R., Esponda, R. R., Huang, J. T. J., Tung, Y. C. L., Rodriguez-Cuenca, S., Tomaz, R. A., Harding, H. P., Melvin, A. & 13 others, Yeo, G. S. H., Preiss, D., Vidal-Puig, A., Vallier, L., Nair, K. S., Wareham, N. J., Ron, D., Gribble, F. M., Reimann, F., Sattar, N., Savage, D. B., Allan, B. B. & O’Rahilly, S., Feb 20 2020, In : Nature. 578, 7795, p. 444-448 5 p.

Research output: Contribution to journalArticle

Gene expression amplification by nuclear speckle association

Kim, J., Venkata, N. C., Gonzalez, G. A. H., Khanna, N. & Belmont, A. S., Jan 6 2020, In : Journal of Cell Biology. 219, 1

Research output: Contribution to journalArticle

Open Access

General route to design polymer molecular weight distributions through flow chemistry

Walsh, D. J., Schinski, D. A., Schneider, R. A. & Guironnet, D., Dec 1 2020, In : Nature communications. 11, 1, 3094.

Research output: Contribution to journalArticle

Open Access

Genetic analysis of the transition from wild to domesticated cotton (Gossypium hirsutum L.)

Grover, C. E., Yoo, M. J., Lin, M., Murphy, M. D., Harker, D. B., Byers, R. L., Lipka, A. E., Hu, G., Yuan, D., Conover, J. L., Udall, J. A., Paterson, A. H., Gore, M. A. & Wendel, J. F., Feb 1 2020, In : G3: Genes, Genomes, Genetics. 10, 2, p. 731-754 24 p.

Research output: Contribution to journalArticle

Open Access

Genetic Structure of Ralstonia solanacearum and Ralstonia pseudosolanacearum in Brazil

Santiago, T. R., Lopes, C. A., Caetano-Anollés, G. & Mizubuti, E. S. G., 2020, In : Plant disease. 104, 4, p. 1019-1025 7 p.

Research output: Contribution to journalArticle

Genome-wide identification and expression profile analysis of WRKY family genes in the autopolyploid saccharum spontaneum

Li, Z., Hua, X., Zhong, W., Yuan, Y., Wang, Y., Wang, Z., Ming, R. & Zhang, J., Mar 1 2020, In : Plant and Cell Physiology. 61, 3, p. 616-630 15 p.

Research output: Contribution to journalArticle

Genomic regions influencing aggressive behavior in honey bees are defined by colony allele frequencies

Avalos, A., Fang, M., Pan, H., Ramirez Lluch, A., Lipka, A. E., Zhao, S. D., Giray, T., Robinson, G. E., Zhang, G. & Hudson, M. E., Jul 6 2020, In : Proceedings of the National Academy of Sciences.

Research output: Contribution to journalArticle

Genomic resources for darters (Percidae: Etheostominae) provide insight into postzygotic barriers implicated in speciation

Moran, R. L., Catchen, J. M. & Fuller, R. C., Mar 1 2020, In : Molecular biology and evolution. 37, 3, p. 711-729 19 p., msz260.

Research output: Contribution to journalArticle

Open Access

Genomic variation between PRSV resistant transgenic SunUp and its progenitor cultivar Sunset

Fang, J., Fang, J., Fang, J., Fang, J., Wood, A. M., Chen, Y., Chen, Y., Yue, J., Ming, R. & Ming, R., Jun 12 2020, In : BMC genomics. 21, 1, 398.

Research output: Contribution to journalArticle

Open Access

Genotyping-by-Sequencing for Analysis of the Genetic Variation of Podosphaera xanthii, Incitant of Cucurbit Powdery Mildew

Xiang, Y., Miller, A. N., McGrath, M. & Babadoost, M., Jan 1 2020, In : Plant disease. 104, 3, p. 951-957 7 p.

Research output: Contribution to journalArticle

Germline-dependent transmission of male reproductive traits induced by an endocrine disruptor, di-2-ethylhexyl phthalate, in future generations

Barakat, R., Lin, P. C., Park, C. J., Zeineldin, M., Zhou, S., Rattan, S., Brehm, E., Flaws, J. A. & Ko, C. M. J., Dec 1 2020, In : Scientific reports. 10, 1, 5705.

Research output: Contribution to journalArticle

Open Access

Global importance measure methodology for integrated probabilistic risk assessment

Sakurahara, T., Reihani, S., Kee, E. & Mohaghegh, Z., Apr 1 2020, In : Proceedings of the Institution of Mechanical Engineers, Part O: Journal of Risk and Reliability. 234, 2, p. 377-396 20 p.

Research output: Contribution to journalArticle

Global Sensitivity Analysis of Environmental, Water Quality, Photoreactivity, and Engineering Design Parameters in Sunlight Inactivation of Viruses

Zhang, X., Lardizabal, A., Silverman, A. I., Vione, D., Kohn, T., Nguyen, T. H. & Guest, J. S., Jul 7 2020, In : Environmental Science and Technology. 54, 13, p. 8401-8410 10 p.

Research output: Contribution to journalArticle

Global shape of Toll activation is determined by wntD enhancer properties

Rahimi, N., Carmon, S., Averbukh, I., Khajouei, F., Sinha, S., Schejter, E. D., Barkai, N. & Shilo, B. Z., Jan 21 2020, In : Proceedings of the National Academy of Sciences of the United States of America. 117, 3, p. 1552-1558 7 p.

Research output: Contribution to journalArticle

Global View of Biofuel Butanol and Economics of Its Production by Fermentation from Sweet Sorghum Bagasse, Food Waste, and Yellow Top Presscake: Application of Novel Technologies

Qureshi, N., Lin, X., Liu, S., Saha, B. C., Mariano, A. P., Polaina, J., Ezeji, T. C., Friedl, A., Maddox, I. S., Klasson, K. T., Dien, B. S. & Singh, V., Jun 3 2020, In : Fermentation. 6, 2, 58.

Research output: Contribution to journalArticle

Open Access

Gold nanoparticles disrupt actin organization and pulmonary endothelial barriers

Sinclair, W. E., Chang, H. H., Dan, A., Kenis, P. J. A., Murphy, C. J. & Leckband, D. E., Dec 1 2020, In : Scientific reports. 10, 1, 13320.

Research output: Contribution to journalArticle

Open Access

Gold nanorod impact on mechanical properties of stretchable hydrogels

Turner, J. G., Og, J. H. & Murphy, C. J., Jul 28 2020, In : Soft Matter. 16, 28, p. 6582-6590 9 p.

Research output: Contribution to journalArticle

Gonad development and reproductive hormones of invasive silver carp (Hypophthalmichthys molitrix) in the Illinois River

Tucker, E. K., Zurliene, M. E., Suski, C. D. & Nowak, R. A., Mar 13 2020, In : Biology of reproduction. 102, 3, p. 647-659 13 p.

Research output: Contribution to journalArticle

Gram-Negative Antibiotic Active through Inhibition of an Essential Riboswitch

Motika, S. E., Ulrich, R. J., Geddes, E. J., Lee, H. Y., Lau, G. W. & Hergenrother, P. J., Jun 17 2020, In : Journal of the American Chemical Society. 142, 24, p. 10856-10862 7 p.

Research output: Contribution to journalArticle