Office of the Vice Chancellor for Research and Innovation

Research Output

Filter
Article
2020

Allele specific expression of Dof genes responding to hormones and abiotic stresses in sugarcane

Cai, M., Lin, J., Li, Z., Lin, Z., Ma, Y., Wang, Y. & Ming, R., Jan 1 2020, In : PloS one. 15, 1, e0227716.

Research output: Contribution to journalArticle

Open Access

All-Mode Quantum-Classical Path Integral Simulation of Bacteriochlorophyll Dimer Exciton-Vibration Dynamics

Bose, A. & Makri, N., Jun 18 2020, In : Journal of Physical Chemistry B. 124, 24, p. 5028-5038 11 p.

Research output: Contribution to journalArticle

Altered Hippocampal Epigenetic Regulation Underlying Reduced Cognitive Development in Response to Early Life Environmental Insults

Schachtschneider, K. M., Welge, M. E., Auvil, L., Chaki, S., Rund, L. A., Madsen, O., Elmore, M. R. P., Johnson, R. W., Groenen, M. A. M. & Schook, L. B., Feb 4 2020, In : Genes. 11, 2, 162.

Research output: Contribution to journalArticle

Open Access

A mass spectrometry-based high-throughput screening method for engineering fatty acid synthases with improved production of medium-chain fatty acids

Xue, P., Si, T., Mishra, S., Zhang, L., Choe, K., Sweedler, J. V. & Zhao, H., Jul 1 2020, In : Biotechnology and bioengineering. 117, 7, p. 2131-2138 8 p.

Research output: Contribution to journalArticle

A Metabolic Pathway for Activation of Dietary Glucosinolates by a Human Gut Symbiont

Liou, C. S., Sirk, S. J., Diaz, C. A. C., Klein, A. P., Fischer, C. R., Higginbottom, S. K., Erez, A., Donia, M. S., Sonnenburg, J. L. & Sattely, E. S., Feb 20 2020, In : Cell. 180, 4, p. 717-728.e19

Research output: Contribution to journalArticle

A Mode-Jumping Algorithm for Bayesian Factor Analysis

Man, A. X. & Culpepper, S. A., 2020, (Accepted/In press) In : Journal of the American Statistical Association.

Research output: Contribution to journalArticle

A Multifunctional Chemical Agent as an Attenuator of Amyloid Burden and Neuroinflammation in Alzheimer’s Disease

Cho, H-J., Sharma, A. K., Zhang, Y., Gross, M. L. & Mirica, L. M., May 20 2020, In : ACS Chemical Neuroscience. 11, 10, p. 1471-1481 11 p.

Research output: Contribution to journalArticle

A multilevel sampled-data approach for resilient navigation and control of autonomous systems

Jafarnejadsani, H., Wan, N., Hovakimyan, N. & Voulgaris, P. G., Feb 1 2020, In : International Journal of Robust and Nonlinear Control. 30, 3, p. 1071-1097 27 p.

Research output: Contribution to journalArticle

A Multi-Organ Nucleus Segmentation Challenge

Kumar, N., Verma, R., Anand, D., Zhou, Y., Onder, O. F., Tsougenis, E., Chen, H., Heng, P. A., Li, J., Hu, Z., Wang, Y., Koohbanani, N. A., Jahanifar, M., Tajeddin, N. Z., Gooya, A., Rajpoot, N., Ren, X., Zhou, S., Wang, Q., Shen, D. & 67 others, Yang, C. K., Weng, C. H., Yu, W. H., Yeh, C. Y., Yang, S., Xu, S., Yeung, P. H., Sun, P., Mahbod, A., Schaefer, G., Ellinger, I., Ecker, R., Smedby, O., Wang, C., Chidester, B., Ton, T. V., Tran, M. T., Ma, J., Do, M. N., Graham, S., Vu, Q. D., Kwak, J. T., Gunda, A., Chunduri, R., Hu, C., Zhou, X., Lotfi, D., Safdari, R., Kascenas, A., O'Neil, A., Eschweiler, D., Stegmaier, J., Cui, Y., Yin, B., Chen, K., Tian, X., Gruening, P., Barth, E., Arbel, E., Remer, I., Ben-Dor, A., Sirazitdinova, E., Kohl, M., Braunewell, S., Li, Y., Xie, X., Shen, L., Ma, J., Baksi, K. D., Khan, M. A., Choo, J., Colomer, A., Naranjo, V., Pei, L., Iftekharuddin, K. M., Roy, K., Bhattacharjee, D., Pedraza, A., Bueno, M. G., Devanathan, S., Radhakrishnan, S., Koduganty, P., Wu, Z., Cai, G., Liu, X., Wang, Y. & Sethi, A., May 2020, In : IEEE transactions on medical imaging. 39, 5, p. 1380-1391 12 p., 8880654.

Research output: Contribution to journalArticle

An Activity-Based Sensing Approach for the Detection of Cyclooxygenase-2 in Live Cells

Yadav, A. K., Reinhardt, C. J., Arango, A. S., Huff, H. C., Dong, L., Malkowski, M. G., Das, A., Tajkhorshid, E. & Chan, J., Feb 17 2020, In : Angewandte Chemie - International Edition. 59, 8, p. 3307-3314 8 p.

Research output: Contribution to journalArticle

Analysis of cicada wing surface constituents by comprehensive multidimensional gas chromatography for species differentiation

Román-Kustas, J., Hoffman, J. B., Alonso, D., Reed, J. H., Gonsalves, A. E., Oh, J., Hong, S., Jo, K. D., Dana, C. E., Alleyne, M., Miljkovic, N. & Cropek, D. M., Nov 2020, In : Microchemical Journal. 158, 105089.

Research output: Contribution to journalArticle

Open Access

Analysis of gut microbiome, nutrition and immune status in autism spectrum disorder: a case-control study in Ecuador

Zurita, M. F., Cárdenas, P. A., Sandoval, M. E., Peña, M. C., Fornasini, M., Flores, N., Monaco, M. H., Berding, K., Donovan, S. M., Kuntz, T., Gilbert, J. A. & Baldeón, M. E., May 3 2020, In : Gut Microbes. 11, 3, p. 453-464 12 p.

Research output: Contribution to journalArticle

Analysis of MADS-box genes revealed modified flowering gene network and diurnal expression in pineapple

Zhang, X., Fatima, M., Zhou, P., Ma, Q. & Ming, R., Jan 2 2020, In : BMC genomics. 21, 1, 8.

Research output: Contribution to journalArticle

Open Access

Analysis of recent interception records reveals frequent transport of arboreal ants and potential predictors for ant invasion in Taiwan

Lee, C. C., Weng, Y. M., Lai, L. C., Suarez, A. V., Wu, W. J., Lin, C. C. & Yang, C. C. S., Jun 2020, In : Insects. 11, 6, p. 1-13 13 p., 356.

Research output: Contribution to journalArticle

Open Access

An anti-CRISPR viral ring nuclease subverts type III CRISPR immunity

Athukoralage, J. S., McMahon, S. A., Zhang, C., Grüschow, S., Graham, S., Krupovic, M., Whitaker, R. J., Gloster, T. M. & White, M. F., Jan 23 2020, In : Nature. 577, 7791, p. 572-575 4 p.

Research output: Contribution to journalArticle

An Asymmetric Iron-Based Redox-Active System for Electrochemical Separation of Ions in Aqueous Media

Tan, K. J., Su, X. & Hatton, T. A., Apr 2020, In : Advanced Functional Materials. 30, 15, 1910363.

Research output: Contribution to journalArticle

An automated aquatic rack system for rearing marine invertebrates

Henry, J. Q., Lesoway, M. P. & Perry, K. J., May 4 2020, In : BMC biology. 18, 1, 46.

Research output: Contribution to journalArticle

Open Access

Ancient DNA suggests modern wolves trace their origin to a Late Pleistocene expansion from Beringia

Loog, L., Thalmann, O., Sinding, M. H. S., Schuenemann, V. J., Perri, A., Germonpré, M., Bocherens, H., Witt, K. E., Samaniego Castruita, J. A., Velasco, M. S., Lundstrøm, I. K. C., Wales, N., Sonet, G., Frantz, L., Schroeder, H., Budd, J., Jimenez, E. L., Fedorov, S., Gasparyan, B., Kandel, A. W. & 16 others, Lázničková-Galetová, M., Napierala, H., Uerpmann, H. P., Nikolskiy, P. A., Pavlova, E. Y., Pitulko, V. V., Herzig, K. H., Malhi, R. S., Willerslev, E., Hansen, A. J., Dobney, K., Gilbert, M. T. P., Krause, J., Larson, G., Eriksson, A. & Manica, A., May 1 2020, In : Molecular ecology. 29, 9, p. 1596-1610 15 p.

Research output: Contribution to journalArticle

Open Access

An evolutionary path to altered cofactor specificity in a metalloenzyme

Barwinska-Sendra, A., Garcia, Y. M., Sendra, K. M., Baslé, A., Mackenzie, E. S., Tarrant, E., Card, P., Tabares, L. C., Bicep, C., Un, S., Kehl-Fie, T. E. & Waldron, K. J., Dec 1 2020, In : Nature communications. 11, 1, 2738.

Research output: Contribution to journalArticle

Open Access

A New Biosensor for Stilbenes and a Cannabinoid Enabled by Genome Mining of a Transcriptional Regulator

Sun, H., Zhao, H. & Ang, E. L., Apr 17 2020, In : ACS synthetic biology. 9, 4, p. 698-705 8 p.

Research output: Contribution to journalArticle

A new dynamic wetness index (DWI) predicts soil moisture persistence and correlates with key indicators of surface soil geochemistry

Li, M., Foster, E. J., Le, P. V. V., Yan, Q., Stumpf, A., Hou, T., Papanicolaou, A. N. T., Wacha, K. M., Wilson, C. G., Wang, J., Kumar, P. & Filley, T., Jun 1 2020, In : Geoderma. 368, 114239.

Research output: Contribution to journalArticle

A new genus and species of Paralimnini leafhoppers from Israel (Hemiptera: Cicadellidae: Deltocephalinae)

Sinaiko, G. & Dietrich, C. H., Jun 11 2020, In : Zootaxa. 4790, 2, p. 387-392 6 p.

Research output: Contribution to journalArticle

A new genus of Hoplojassini from French Guiana (Hemiptera: Cicadellidae: Iassinae) and identification key for species of tribe

Gonçalves, C. C., Dietrich, C. H. & Takiya, D. M., Feb 20 2020, In : Zootaxa. 4742, 2, p. zootaxa.4742.2.8

Research output: Contribution to journalArticle

A Newly Synthesized Tris(crown ether) Ionophore for Assisted Ion Transfer at NanoITIES Electrodes

Chen, R., Yang, A., Chang, A., Oweimrin, P. F., Romero, J., Vichitcharoenpaisarn, P., Tapia, S., Ha, K., Villaflor, C. & Shen, M., Feb 17 2020, In : ChemElectroChem. 7, 4, p. 967-974 8 p.

Research output: Contribution to journalArticle

A new species of freshwater mussel in the genus Popenaias Frierson, 1927, from the Gulf coastal rivers of central Mexico (Bivalvia: Unionida: Unionidae) with comments on the genus

Inoue, K., Cummings, K. S., Tiemann, J. S., Miller, T. D., Johnson, N. A., Smith, C. H. & Randklev, C. R., Jul 20 2020, In : Zootaxa. 4816, 4, p. 457-490 34 p.

Research output: Contribution to journalArticle

A new species of the Oriental leafhopper genus Kutara Distant (Hemiptera: Cicadellidae: Deltocephalinae) from Vietnam

Xu, D., Dietrich, C. H., Webb, M. D. & Zhang, Y., May 11 2020, In : Zootaxa. 4772, 3, p. 585-592 8 p.

Research output: Contribution to journalArticle

An improved pig reference genome sequence to enable pig genetics and genomics research

Warr, A., Affara, N., Aken, B., Beiki, H., Bickhart, D. M., Billis, K., Chow, W., Eory, L., Finlayson, H. A., Flicek, P., Girón, C. G., Griffin, D. K., Hall, R., Hannum, G., Hourlier, T., Howe, K., Hume, D. A., Izuogu, O., Kim, K., Koren, S. & 20 others, Liu, H., Manchanda, N., Martin, F. J., Nonneman, D. J., O'Connor, R. E., Phillippy, A. M., Rohrer, G. A., Rosen, B. D., Rund, L. A., Sargent, C. A., Schook, L. B., Schroeder, S. G., Schwartz, A. S., Skinner, B. M., Talbot, R., Tseng, E., Tuggle, C. K., Watson, M., Smith, T. P. L. & Archibald, A. L., Jun 1 2020, In : GigaScience. 9, 6

Research output: Contribution to journalArticle

Open Access

An indentation-based approach to determine the elastic constants of soft anisotropic tissues

Moghaddam, A. O., Wei, J., Kim, J., Dunn, A. C. & Wagoner Johnson, A. J., Mar 2020, In : Journal of the Mechanical Behavior of Biomedical Materials. 103, 103539.

Research output: Contribution to journalArticle

An in-silico human cell model reveals the influence of spatial organization on RNA splicing

Ghaemi, Z., Peterson, J. R., Gruebele, M. & Luthey-Schulten, Z., Mar 25 2020, In : PLoS computational biology. 16, 3, e1007717.

Research output: Contribution to journalArticle

Open Access

An in vitro mimic of in-cell solvation for protein folding studies

Davis, C. M., Deutsch, J. & Gruebele, M., Apr 2020, In : Protein Science. 29, 4, p. 1060-1068 9 p.

Research output: Contribution to journalArticle

Anisotropic mineralized collagen scaffolds accelerate osteogenic response in a glycosaminoglycan-dependent fashion

Dewey, M. J., Nosatov, A. V., Subedi, K. & Harley, B., Apr 21 2020, In : RSC Advances. 10, 26, p. 15629-15641 13 p.

Research output: Contribution to journalArticle

Open Access

An unusual new genus and species of centrotine treehopper (Hemiptera: Membracidae: Centrotinae) from Nicaragua

Morris, B. O. & Dietrich, C. H., Jan 29 2020, In : Zootaxa. 4729, 2, p. 286-292 7 p.

Research output: Contribution to journalArticle

An urban informatics approach to understanding residential mobility in Metro Chicago

Pan, H., Chen, S., Gao, Y., Deal, B. & Liu, J., 2020, (Accepted/In press) In : Environment and Planning B: Urban Analytics and City Science.

Research output: Contribution to journalArticle

A partial-dithering strategy for edge-illumination X-ray phase-contrast tomography enabled by a joint reconstruction method

Chen, Y., Hagen, C. K., Olivo, A. & Anastasio, M. A., May 21 2020, In : Physics in medicine and biology. 65, 10, 105007.

Research output: Contribution to journalArticle

A Pathway for Degradation of Uracil to Acetyl Coenzyme A in Bacillus megaterium

Zhu, D., Wei, Y., Yin, J., Liu, D., Ang, E. L., Zhao, H. & Zhang, Y., Mar 18 2020, In : Applied and environmental microbiology. 86, 7

Research output: Contribution to journalArticle

A Photoactivatable Formaldehyde Donor with Fluorescence Monitoring Reveals Threshold to Arrest Cell Migration

Smaga, L. P., Pino, N. W., Ibarra, G. E., Krishnamurthy, V. & Chan, J., Jan 15 2020, In : Journal of the American Chemical Society. 142, 2, p. 680-684 5 p.

Research output: Contribution to journalArticle

A photo-regulated aptamer sensor for spatiotemporally controlled monitoring of ATP in the mitochondria of living cells

Hong, S., Zhang, X., Lake, R. J., Pawel, G. T., Guo, Z., Pei, R. & Lu, Y., Jan 1 2020, In : Chemical Science. 11, 3, p. 713-720 8 p.

Research output: Contribution to journalArticle

Open Access

A polarization reconfigurable microstrip patch antenna using liquid metal microfluidics

Griffin, A. S., Pan, H., Barrera, J. D., Huff, G. H., White, S. R. & Sottos, N. R., Mar 16 2020, In : Smart Materials and Structures. 29, 4, 045032.

Research output: Contribution to journalArticle

Applied-force oscillations in avalanche dynamics

McFaul, L. W., Sparks, G., Sickle, J., Uhl, J. T., Wright, W. J., Maaß, R. & Dahmen, K. A., May 2020, In : Physical Review E. 101, 5, 053003.

Research output: Contribution to journalArticle

Open Access

A prospective cohort analysis of gut microbial co-metabolism in Alaska Native and rural African people at high and low risk of colorectal cancer

Ocvirk, S., Wilson, A. S., Posma, J. M., Li, J. V., Koller, K. R., Day, G. M., Flanagan, C. A., Otto, J. E., Sacco, P. E., Sacco, F. D., Sapp, F. R., Wilson, A. S., Newton, K., Brouard, F., Delany, J. P., Behnning, M., Appolonia, C. N., Soni, D., Bhatti, F., Methé, B. & 7 others, Fitch, A., Morris, A., Gaskins, H. R., Kinross, J., Nicholson, J. K., Thomas, T. K. & O'Keefe, S. J. D., Feb 1 2020, In : American Journal of Clinical Nutrition. 111, 2, p. 406-419 14 p.

Research output: Contribution to journalArticle

Arabidopsis plants expressing only the redox-regulated Rca-α isoform have constrained photosynthesis and plant growth

Kim, S. Y., Stessman, D. J., Wright, D. A., Spalding, M. H., Huber, S. C. & Ort, D. R., 2020, (Accepted/In press) In : Plant Journal.

Research output: Contribution to journalArticle

Archaeological Investigations on the Emerald Avenue, a Potential Mississippian Period Roadway in Southwestern Illinois

Skousen, B. J., Larson, T. H., Malouchos, E. W., Kruchten, J. D., Barzilai, R. M., Alt, S. M. & Pauketat, T. R., Jul 3 2020, In : Journal of Field Archaeology. 45, 5, p. 372-393 22 p.

Research output: Contribution to journalArticle

Archimedean lattices emerge in template-directed eutectic solidification

Kulkarni, A. A., Hanson, E., Zhang, R., Thornton, K. & Braun, P. V., Jan 16 2020, In : Nature. 577, 7790, p. 355-358 4 p.

Research output: Contribution to journalArticle

Arctic and boreal paleofire records reveal drivers of fire activity and departures from Holocene variability

Hoecker, T. J., Higuera, P. E., Kelly, R. & Hu, F. S., Sep 1 2020, In : Ecology. 101, 9, e03096.

Research output: Contribution to journalArticle

Open Access