Office of the Vice Chancellor for Research and Innovation

Research Output

2020

Agricultural robotics research applicable to poultry production: A review

Ren, G., Lin, T., Ying, Y., Chowdhary, G. & Ting, K. C., Feb 2020, In : Computers and Electronics in Agriculture. 169, 105216.

Research output: Contribution to journalReview article

A guide to LIGO-Virgo detector noise and extraction of transient gravitational-wave signals

LIGO Scientific Collaboration and Virgo Collaboration, Allen, G., Ricker, P. M. & Seidel, E., Feb 6 2020, In : Classical and Quantum Gravity. 37, 5, 055002.

Research output: Contribution to journalArticle

Open Access

A hypoxia-induced Rab pathway regulates embryo implantation by controlled trafficking of secretory granules

Bhurke, A., Kannan, A., Neff, A., Ma, Q., Laws, M. J., Taylor, R. N., Bagchi, M. K. & Bagchi, I. C., Jun 23 2020, In : Proceedings of the National Academy of Sciences of the United States of America. 117, 25, p. 14532-14542 11 p.

Research output: Contribution to journalArticle

Air Jet Impingement Cooling of Electronic Devices Using Additively Manufactured Nozzles

Kwon, B., Foulkes, T., Yang, T., Miljkovic, N. & King, W. P., Feb 2020, In : IEEE Transactions on Components, Packaging and Manufacturing Technology. 10, 2, p. 220-229 10 p., 8809671.

Research output: Contribution to journalArticle

A Joint Fermi-GBM and LIGO/Virgo Analysis of Compact Binary Mergers from the First and Second Gravitational-wave Observing Runs

LIGO Scientific Collaboration and Virgo Collaboration, Allen, G. D., Ricker, P. M. & Seidel, E., Apr 20 2020, In : The Astrophysical journal. 893, 2

Research output: Contribution to journalArticle

Alcohol sensitivity in women after undergoing bariatric surgery: a cross-sectional study

Acevedo, M. B., Teran-Garcia, M., Bucholz, K. K., Eagon, J. C., Bartholow, B. D., Burd, N. A., Khan, N., Rowitz, B. & Pepino, M. Y., Apr 2020, In : Surgery for Obesity and Related Diseases. 16, 4, p. 536-544 9 p.

Research output: Contribution to journalArticle

Algorithm Design Based on Derived Operation Rules for a System of Reservoirs in Parallel

Zhao, Q., Cai, X. & Li, Y., May 1 2020, In : Journal of Water Resources Planning and Management. 146, 5, 04020024.

Research output: Contribution to journalArticle

Allele specific expression of Dof genes responding to hormones and abiotic stresses in sugarcane

Cai, M., Lin, J., Li, Z., Lin, Z., Ma, Y., Wang, Y. & Ming, R., Jan 1 2020, In : PloS one. 15, 1, e0227716.

Research output: Contribution to journalArticle

Open Access

All-Mode Quantum-Classical Path Integral Simulation of Bacteriochlorophyll Dimer Exciton-Vibration Dynamics

Bose, A. & Makri, N., Jun 18 2020, In : Journal of Physical Chemistry B. 124, 24, p. 5028-5038 11 p.

Research output: Contribution to journalArticle

Aloe: Verifying reliability of approximate programs in the presence of recovery mechanisms

Joshi, K., Fernando, V. & Misailovic, S., Feb 22 2020, CGO 2020 - Proceedings of the 18th ACM/IEEE International Symposium on Code Generation and Optimization. Mars, J., Tang, L., Xue, J. & Wu, P. (eds.). Association for Computing Machinery, Inc, p. 56-67 12 p. (CGO 2020 - Proceedings of the 18th ACM/IEEE International Symposium on Code Generation and Optimization).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access

Altered Hippocampal Epigenetic Regulation Underlying Reduced Cognitive Development in Response to Early Life Environmental Insults

Schachtschneider, K. M., Welge, M. E., Auvil, L., Chaki, S., Rund, L. A., Madsen, O., Elmore, M. R. P., Johnson, R. W., Groenen, M. A. M. & Schook, L. B., Feb 4 2020, In : Genes. 11, 2, 162.

Research output: Contribution to journalArticle

Open Access

A mass spectrometry-based high-throughput screening method for engineering fatty acid synthases with improved production of medium-chain fatty acids

Xue, P., Si, T., Mishra, S., Zhang, L., Choe, K., Sweedler, J. V. & Zhao, H., Jul 1 2020, In : Biotechnology and bioengineering. 117, 7, p. 2131-2138 8 p.

Research output: Contribution to journalArticle

A Metabolic Pathway for Activation of Dietary Glucosinolates by a Human Gut Symbiont

Liou, C. S., Sirk, S. J., Diaz, C. A. C., Klein, A. P., Fischer, C. R., Higginbottom, S. K., Erez, A., Donia, M. S., Sonnenburg, J. L. & Sattely, E. S., Feb 20 2020, In : Cell. 180, 4, p. 717-728.e19

Research output: Contribution to journalArticle

A Mode-Jumping Algorithm for Bayesian Factor Analysis

Man, A. X. & Culpepper, S. A., 2020, (Accepted/In press) In : Journal of the American Statistical Association.

Research output: Contribution to journalArticle

A Multifunctional Chemical Agent as an Attenuator of Amyloid Burden and Neuroinflammation in Alzheimer’s Disease

Cho, H-J., Sharma, A. K., Zhang, Y., Gross, M. L. & Mirica, L. M., May 20 2020, In : ACS Chemical Neuroscience. 11, 10, p. 1471-1481 11 p.

Research output: Contribution to journalArticle

A multilevel sampled-data approach for resilient navigation and control of autonomous systems

Jafarnejadsani, H., Wan, N., Hovakimyan, N. & Voulgaris, P. G., Feb 1 2020, In : International Journal of Robust and Nonlinear Control. 30, 3, p. 1071-1097 27 p.

Research output: Contribution to journalArticle

A Multi-Organ Nucleus Segmentation Challenge

Kumar, N., Verma, R., Anand, D., Zhou, Y., Onder, O. F., Tsougenis, E., Chen, H., Heng, P. A., Li, J., Hu, Z., Wang, Y., Koohbanani, N. A., Jahanifar, M., Tajeddin, N. Z., Gooya, A., Rajpoot, N., Ren, X., Zhou, S., Wang, Q., Shen, D. & 67 others, Yang, C. K., Weng, C. H., Yu, W. H., Yeh, C. Y., Yang, S., Xu, S., Yeung, P. H., Sun, P., Mahbod, A., Schaefer, G., Ellinger, I., Ecker, R., Smedby, O., Wang, C., Chidester, B., Ton, T. V., Tran, M. T., Ma, J., Do, M. N., Graham, S., Vu, Q. D., Kwak, J. T., Gunda, A., Chunduri, R., Hu, C., Zhou, X., Lotfi, D., Safdari, R., Kascenas, A., O'Neil, A., Eschweiler, D., Stegmaier, J., Cui, Y., Yin, B., Chen, K., Tian, X., Gruening, P., Barth, E., Arbel, E., Remer, I., Ben-Dor, A., Sirazitdinova, E., Kohl, M., Braunewell, S., Li, Y., Xie, X., Shen, L., Ma, J., Baksi, K. D., Khan, M. A., Choo, J., Colomer, A., Naranjo, V., Pei, L., Iftekharuddin, K. M., Roy, K., Bhattacharjee, D., Pedraza, A., Bueno, M. G., Devanathan, S., Radhakrishnan, S., Koduganty, P., Wu, Z., Cai, G., Liu, X., Wang, Y. & Sethi, A., May 2020, In : IEEE transactions on medical imaging. 39, 5, p. 1380-1391 12 p., 8880654.

Research output: Contribution to journalArticle

An Activity-Based Sensing Approach for the Detection of Cyclooxygenase-2 in Live Cells

Yadav, A. K., Reinhardt, C. J., Arango, A. S., Huff, H. C., Dong, L., Malkowski, M. G., Das, A., Tajkhorshid, E. & Chan, J., Feb 17 2020, In : Angewandte Chemie - International Edition. 59, 8, p. 3307-3314 8 p.

Research output: Contribution to journalArticle

Analysis of cicada wing surface constituents by comprehensive multidimensional gas chromatography for species differentiation

Román-Kustas, J., Hoffman, J. B., Alonso, D., Reed, J. H., Gonsalves, A. E., Oh, J., Hong, S., Jo, K. D., Dana, C. E., Alleyne, M., Miljkovic, N. & Cropek, D. M., Nov 2020, In : Microchemical Journal. 158, 105089.

Research output: Contribution to journalArticle

Open Access

Analysis of gut microbiome, nutrition and immune status in autism spectrum disorder: a case-control study in Ecuador

Zurita, M. F., Cárdenas, P. A., Sandoval, M. E., Peña, M. C., Fornasini, M., Flores, N., Monaco, M. H., Berding, K., Donovan, S. M., Kuntz, T., Gilbert, J. A. & Baldeón, M. E., May 3 2020, In : Gut Microbes. 11, 3, p. 453-464 12 p.

Research output: Contribution to journalArticle

Analysis of MADS-box genes revealed modified flowering gene network and diurnal expression in pineapple

Zhang, X., Fatima, M., Zhou, P., Ma, Q. & Ming, R., Jan 2 2020, In : BMC genomics. 21, 1, 8.

Research output: Contribution to journalArticle

Open Access

Analysis of recent interception records reveals frequent transport of arboreal ants and potential predictors for ant invasion in Taiwan

Lee, C. C., Weng, Y. M., Lai, L. C., Suarez, A. V., Wu, W. J., Lin, C. C. & Yang, C. C. S., Jun 2020, In : Insects. 11, 6, p. 1-13 13 p., 356.

Research output: Contribution to journalArticle

Open Access

An Analysis of Phishing Emails and How the Human Vulnerabilities are Exploited

Sharma, T. & Bashir, M., 2020, Advances in Human Factors in Cybersecurity - AHFE 2020 Virtual Conference on Human Factors in Cybersecurity. Corradini, I., Nardelli, E. & Ahram, T. (eds.). Springer, p. 49-55 7 p. (Advances in Intelligent Systems and Computing; vol. 1219 AISC).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

An anti-CRISPR viral ring nuclease subverts type III CRISPR immunity

Athukoralage, J. S., McMahon, S. A., Zhang, C., Grüschow, S., Graham, S., Krupovic, M., Whitaker, R. J., Gloster, T. M. & White, M. F., Jan 23 2020, In : Nature. 577, 7791, p. 572-575 4 p.

Research output: Contribution to journalArticle

An Asymmetric Iron-Based Redox-Active System for Electrochemical Separation of Ions in Aqueous Media

Tan, K. J., Su, X. & Hatton, T. A., Apr 2020, In : Advanced Functional Materials. 30, 15, 1910363.

Research output: Contribution to journalArticle

An automated aquatic rack system for rearing marine invertebrates

Henry, J. Q., Lesoway, M. P. & Perry, K. J., May 4 2020, In : BMC biology. 18, 1, 46.

Research output: Contribution to journalArticle

Open Access

Anchor box optimization for object detection

Zhong, Y., Wang, J., Peng, J. & Zhang, L., Mar 2020, Proceedings - 2020 IEEE Winter Conference on Applications of Computer Vision, WACV 2020. Institute of Electrical and Electronics Engineers Inc., p. 1275-1283 9 p. 9093498. (Proceedings - 2020 IEEE Winter Conference on Applications of Computer Vision, WACV 2020).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Ancient DNA suggests modern wolves trace their origin to a Late Pleistocene expansion from Beringia

Loog, L., Thalmann, O., Sinding, M. H. S., Schuenemann, V. J., Perri, A., Germonpré, M., Bocherens, H., Witt, K. E., Samaniego Castruita, J. A., Velasco, M. S., Lundstrøm, I. K. C., Wales, N., Sonet, G., Frantz, L., Schroeder, H., Budd, J., Jimenez, E. L., Fedorov, S., Gasparyan, B., Kandel, A. W. & 16 others, Lázničková-Galetová, M., Napierala, H., Uerpmann, H. P., Nikolskiy, P. A., Pavlova, E. Y., Pitulko, V. V., Herzig, K. H., Malhi, R. S., Willerslev, E., Hansen, A. J., Dobney, K., Gilbert, M. T. P., Krause, J., Larson, G., Eriksson, A. & Manica, A., May 1 2020, In : Molecular ecology. 29, 9, p. 1596-1610 15 p.

Research output: Contribution to journalArticle

Open Access

An evolutionary path to altered cofactor specificity in a metalloenzyme

Barwinska-Sendra, A., Garcia, Y. M., Sendra, K. M., Baslé, A., Mackenzie, E. S., Tarrant, E., Card, P., Tabares, L. C., Bicep, C., Un, S., Kehl-Fie, T. E. & Waldron, K. J., Dec 1 2020, In : Nature communications. 11, 1, 2738.

Research output: Contribution to journalArticle

Open Access

A New Biosensor for Stilbenes and a Cannabinoid Enabled by Genome Mining of a Transcriptional Regulator

Sun, H., Zhao, H. & Ang, E. L., Apr 17 2020, In : ACS synthetic biology. 9, 4, p. 698-705 8 p.

Research output: Contribution to journalArticle

A new dynamic wetness index (DWI) predicts soil moisture persistence and correlates with key indicators of surface soil geochemistry

Li, M., Foster, E. J., Le, P. V. V., Yan, Q., Stumpf, A., Hou, T., Papanicolaou, A. N. T., Wacha, K. M., Wilson, C. G., Wang, J., Kumar, P. & Filley, T., Jun 1 2020, In : Geoderma. 368, 114239.

Research output: Contribution to journalArticle

A new genus and species of Paralimnini leafhoppers from Israel (Hemiptera: Cicadellidae: Deltocephalinae)

Sinaiko, G. & Dietrich, C. H., Jun 11 2020, In : Zootaxa. 4790, 2, p. 387-392 6 p.

Research output: Contribution to journalArticle

A new genus of Hoplojassini from French Guiana (Hemiptera: Cicadellidae: Iassinae) and identification key for species of tribe

Gonçalves, C. C., Dietrich, C. H. & Takiya, D. M., Feb 20 2020, In : Zootaxa. 4742, 2, p. zootaxa.4742.2.8

Research output: Contribution to journalArticle

A Newly Synthesized Tris(crown ether) Ionophore for Assisted Ion Transfer at NanoITIES Electrodes

Chen, R., Yang, A., Chang, A., Oweimrin, P. F., Romero, J., Vichitcharoenpaisarn, P., Tapia, S., Ha, K., Villaflor, C. & Shen, M., Feb 17 2020, In : ChemElectroChem. 7, 4, p. 967-974 8 p.

Research output: Contribution to journalArticle

A new species of freshwater mussel in the genus Popenaias Frierson, 1927, from the Gulf coastal rivers of central Mexico (Bivalvia: Unionida: Unionidae) with comments on the genus

Inoue, K., Cummings, K. S., Tiemann, J. S., Miller, T. D., Johnson, N. A., Smith, C. H. & Randklev, C. R., Jul 20 2020, In : Zootaxa. 4816, 4, p. 457-490 34 p.

Research output: Contribution to journalArticle

A new species of the Oriental leafhopper genus Kutara Distant (Hemiptera: Cicadellidae: Deltocephalinae) from Vietnam

Xu, D., Dietrich, C. H., Webb, M. D. & Zhang, Y., May 11 2020, In : Zootaxa. 4772, 3, p. 585-592 8 p.

Research output: Contribution to journalArticle

A New Variational Method for Deep Supervised Semantic Image Hashing

Zhuang, F. & Moulin, P., May 2020, 2020 IEEE International Conference on Acoustics, Speech, and Signal Processing, ICASSP 2020 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 4532-4536 5 p. 9053665. (ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings; vol. 2020-May).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

An examination of dispositional trust in human and autonomous system interactions

Ferronato, P. & Bashir, M., 2020, Human-Computer Interaction. Human Values and Quality of Life - Thematic Area, HCI 2020, Held as Part of the 22nd International Conference, HCII 2020, Proceedings. Kurosu, M. (ed.). Springer, p. 420-435 16 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 12183 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Angiogenic biomaterials to promote therapeutic regeneration and investigate disease progression

Ngo, M. T. & Harley, B. A. C., Oct 2020, In : Biomaterials. 255, 120207.

Research output: Contribution to journalReview article

An Improved Iterative Learning Control for Uncertain Multi-Axis Systems

Armstrong, A. A. & Alleyne, A. G., Jul 2020, 2020 American Control Conference, ACC 2020. Institute of Electrical and Electronics Engineers Inc., p. 4810-4816 7 p. 9147845. (Proceedings of the American Control Conference; vol. 2020-July).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

An improved pig reference genome sequence to enable pig genetics and genomics research

Warr, A., Affara, N., Aken, B., Beiki, H., Bickhart, D. M., Billis, K., Chow, W., Eory, L., Finlayson, H. A., Flicek, P., Girón, C. G., Griffin, D. K., Hall, R., Hannum, G., Hourlier, T., Howe, K., Hume, D. A., Izuogu, O., Kim, K., Koren, S. & 20 others, Liu, H., Manchanda, N., Martin, F. J., Nonneman, D. J., O'Connor, R. E., Phillippy, A. M., Rohrer, G. A., Rosen, B. D., Rund, L. A., Sargent, C. A., Schook, L. B., Schroeder, S. G., Schwartz, A. S., Skinner, B. M., Talbot, R., Tseng, E., Tuggle, C. K., Watson, M., Smith, T. P. L. & Archibald, A. L., Jun 1 2020, In : GigaScience. 9, 6

Research output: Contribution to journalArticle

Open Access

An indentation-based approach to determine the elastic constants of soft anisotropic tissues

Moghaddam, A. O., Wei, J., Kim, J., Dunn, A. C. & Wagoner Johnson, A. J., Mar 2020, In : Journal of the Mechanical Behavior of Biomedical Materials. 103, 103539.

Research output: Contribution to journalArticle

An in-silico human cell model reveals the influence of spatial organization on RNA splicing

Ghaemi, Z., Peterson, J. R., Gruebele, M. & Luthey-Schulten, Z., Mar 25 2020, In : PLoS computational biology. 16, 3, e1007717.

Research output: Contribution to journalArticle

Open Access

An interview with Dr. Francesca E. Duncan

Flaws, J. A., Feb 14 2020, In : Biology of reproduction. 102, 2, p. 261-264 4 p.

Research output: Contribution to journalComment/debate

Open Access

An in vitro mimic of in-cell solvation for protein folding studies

Davis, C. M., Deutsch, J. & Gruebele, M., Apr 2020, In : Protein Science. 29, 4, p. 1060-1068 9 p.

Research output: Contribution to journalArticle