National Center for Supercomputing Applications (NCSA)

Research Output 1970 2019

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Letter
2019

Misunderstood parameter of NCBI BLAST impacts the correctness of bioinformatics workflows

Shah, N., Nute, M. G., Warnow, T. & Pop, M., May 1 2019, In : Bioinformatics. 35, 9, p. 1613-1614 2 p.

Research output: Contribution to journalLetter

Workflow
Bioinformatics
Computational Biology
Work Flow
Correctness

Reply to: Brazilian ethanol expansion subject to limitations

Jaiswal, D., De Souza, A. P., Larsen, S., LeBauer, D. S., Miguez, F. E., Sparovek, G., Bollero, G. A., Buckeridge, M. S. & Long, S. P., Mar 1 2019, In : Nature Climate Change. 9, 3, p. 211-212 2 p.

Research output: Contribution to journalLetter

ethanol
2018

A giant protocluster of galaxies at redshift 5.7

Jiang, L., Wu, J., Bian, F., Chiang, Y. K., Ho, L. C., Shen, Y., Zheng, Z. Y., Bailey, J. I., Blanc, G. A., Crane, J. D., Fan, X., Mateo, M., Olszewski, E. W., Oyarzún, G. A., Wang, R. & Wu, X. B., Dec 1 2018, In : Nature Astronomy. 2, 12, p. 962-966 5 p.

Research output: Contribution to journalLetter

galaxies
universe
sky
emitters
x rays
2017

Bibliometrics: Seven LIGO authors not accounted for

Twidale, M. B., Nov 9 2017, In : Nature. 551, 7679, 1 p.

Research output: Contribution to journalLetter

Reply to “Discussion on the Fracture mechanics interpretation of the scratch test by Akono et al.”

Akono, A-T., Jun 1 2017, In : Engineering Fracture Mechanics. 178, p. 14-21 8 p.

Research output: Contribution to journalLetter

Fracture mechanics
2016

Compressive mapping for next-generation sequencing

Yorukoglu, D., Yu, Y. W., Peng, J. & Berger, B., Apr 7 2016, In : Nature Biotechnology. 34, 4, p. 374-376 3 p.

Research output: Contribution to journalLetter

Mice (computer peripherals)
High-Throughput Nucleotide Sequencing
Sequence Alignment
Chromosome Mapping
Computational Biology

Exploring new features of high-bandwidth memory for GPUs

Li, B., Song, C., Wei, J., Ahn, J. H. & Kim, N. S., Jan 1 2016, In : IEICE Electronics Express. 13, 14

Research output: Contribution to journalLetter

amoeba
bandwidth
Bandwidth
Data storage equipment
Electric power utilization
2015

Quality score compression improves genotyping accuracy

Yu, Y. W., Yorukoglu, D., Peng, J. & Berger, B., Jan 1 2015, In : Nature Biotechnology. 33, 3, p. 240-243 4 p.

Research output: Contribution to journalLetter

Genotyping Techniques
Data Compression
High-Throughput Nucleotide Sequencing
Data compression
ROC Curve

Second letter to editor in response to author response published in J. Air Waste Manage. Assoc. 64: 1218–1220

Gurney, K. R., Huang, J., Coltin, K. & Li, B., Jan 1 2015, In : Journal of the Air and Waste Management Association. 65, 3, p. 245-246 2 p.

Research output: Contribution to journalLetter

Power Plants
Air Pollutants
Coal
Environmental Monitoring
environmental monitoring
2014

Reply to Lopez et al. Consumption-based accounting helps mitigate global air pollution

Guan, D., Lin, J., Davis, S. J., Pan, D., He, K., Wang, C., Wuebbles, D. J., Streets, D. G. & Zhang, Q., Jul 1 2014, In : Proceedings of the National Academy of Sciences of the United States of America. 111, 26

Research output: Contribution to journalLetter

Internationality
Air Pollution
2013

TARGET: A transient transformation system for genome-wide transcription factor target discovery

Bargmann, B. O. R., Marshall-Colon, A., Efroni, I., Ruffel, S., Birnbaum, K. D., Coruzzi, G. M. & Krouk, G., Jan 1 2013, In : Molecular Plant. 6, 3, p. 978-980 3 p.

Research output: Contribution to journalLetter

Transcription Factors
transcription factors
Genome
genome
2012

Comments on "reconstructing the NH mean temperature: Can underestimation of trends and variability be avoided?"

Tingley, M. P. & Li, B., May 1 2012, In : Journal of Climate. 25, 9, p. 3441-3446 6 p.

Research output: Contribution to journalLetter

paleoclimate
regression analysis
temperature
trend

Search for decays of stopped, long-lived particles from 7 TeV pp collisions with the ATLAS detector

The ATLAS Collaboration, Jan 1 2012, In : European Physical Journal C. 72, 4, p. 1-21 21 p., 1965.

Research output: Contribution to journalLetter

Hadrons
hadrons
Detectors
collisions
detectors
2011

Big data, but are we ready?

Trelles, O., Prins, P., Snir, M. & Jansen, R. C., Mar 1 2011, In : Nature Reviews Genetics. 12, 3, 1 p.

Research output: Contribution to journalLetter

Information Management
Computational Biology
Software

Judging the Archon Genomics X PRIZE for whole human genome sequencing

Kedes, L., Liu, E., Jongeneel, C. & Sutton, G., Mar 1 2011, In : Nature Genetics. 43, 3, 1 p.

Research output: Contribution to journalLetter

Human Genome
Genomics
DNA Sequence Analysis
bioenergy
Crops
Water quality
Soils
water quality
Flavors
transverse momentum
leptons
Momentum
Protons
Protons
Detectors
collisions
protons
detectors
transverse momentum
leptons
Momentum
Protons
Electric charge
2010

HerMES: SPIRE detection of high-redshift massive compact galaxies in GOODS-N field

Cava, A., Rodighiero, G., Pérez-Fournon, I., Buitrago, F., Trujillo, I., Altieri, B., Amblard, A., Auld, R., Bock, J., Brisbin, D., Burgarella, D., Castro-Rodríguez, N., Chanial, P., Cirasuolo, M., Clements, D. L., Conselice, C. J., Cooray, A., Eales, S., Elbaz, D., Ferrero, P. & 30 others, Franceschini, A., Glenn, J., González Solares, E. G., Griffin, M., Ibar, E., Ivison, R. J., Marchetti, L., Morrison, G. E., Mortier, A. M. J., Oliver, S. J., Page, M. J., Papageorgiou, A., Pearson, C. P., Pohlen, M., Rawlings, J. I., Raymond, G., Rigopoulou, D., Roseboom, I. G., Rowan-Robinson, M., Scott, D., Seymour, N., Smith, A. J., Symeonidis, M., Tugwell, K. E., Vaccari, M., Valtchanov, I., Vieira, J. D., Vigroux, L., Wang, L. & Wright, G., Jan 1 2010, In : Monthly Notices of the Royal Astronomical Society: Letters. 409, 1

Research output: Contribution to journalLetter

compact galaxies
star formation rate
observatories
observatory
receivers

Suk and Aluru reply

Suk, M. E. & Aluru, N. R., Nov 8 2010, In : Physical review letters. 105, 20, 209402.

Research output: Contribution to journalLetter

2008

Evangelicalism nearsighted: A response to Melani McAlister

O'Gorman, N., Dec 1 2008, In : American Literary History. 20, 4, p. 896-900 5 p.

Research output: Contribution to journalLetter

internationalism
gift
academy
constitution
Evangelicalism
2006

Computing: Report leaps geographical barriers but stumbles over gender [1]

Pollack, M. E., Hambrusch, S. E., Ellis, C. S., Grosz, B. J., Hodgins, J., Bajcsy, R., Brodley, C. E., Aiello, L. C., Bonacina, M. P., Clarke, L. A., Hirschberg, J., Veloso, M. M., Amato, N. M., Sonenberg, L., Weyuker, E., Pollock, L., Irwin, M. J., Padgham, L., Ryder, B. G., Catarci, T. & 6 others, McCoy, K. F., Klawe, M., Carberry, S., Dillon, L., McKeown, K. & Soffa, M. L., May 4 2006, In : Nature. 441, 7089, 1 p.

Research output: Contribution to journalLetter

Open Access

Dispersal of gaseous circumstellar discs around high-mass stars

Shen, Y. & Lou, Y. Q., Jul 1 2006, In : Monthly Notices of the Royal Astronomical Society: Letters. 370, 1

Research output: Contribution to journalLetter

stars
magnetohydrodynamics
gas
stellar cores
turbulence
2001

Autonomic healing of polymer composites

White, S. R., Sottos, N. R., Geubelle, P. H., Moore, J. S., Kessler, M. R., Sriram, S. R., Brown, E. N. & Viswanathan, S., Feb 15 2001, In : Nature. 409, 6822, p. 794-797 4 p.

Research output: Contribution to journalLetter

Polymers
Polymerization
Fatigue
Hot Temperature
Glass ceramics