Research Output 1973 2020

2019

Observation of Light-by-Light Scattering in Ultraperipheral Pb+Pb Collisions with the ATLAS Detector

Atlas Collaboration, Jul 31 2019, In : Physical review letters. 123, 5, 052001.

Research output: Contribution to journalArticle

Open Access
light scattering
collisions
detectors
transverse momentum
standard deviation

Off-policy evaluation and learning from logged bandit feedback: Error reduction via surrogate policy

Xie, Y., Liu, Q., Zhou, Y., Liu, B., Wang, Z. & Peng, J., Jan 1 2019.

Research output: Contribution to conferencePaper

Maximum likelihood
Feedback
evaluation
learning
Recommender systems

One thousand plant transcriptomes and the phylogenomics of green plants

One Thousand Plant Transcriptomes Initiative, Oct 31 2019, In : Nature. 574, 7780, p. 679-685 7 p.

Research output: Contribution to journalArticle

Open Access
Viridiplantae
Transcriptome
Plant Genome
Rhodophyta
Glaucophyta

On the duality of complex geometry and material heterogeneities in linear elastodynamics

Chen, Q. & Elbanna, A., Aug 15 2019, In : International Journal of Solids and Structures. 168, p. 203-210 8 p.

Research output: Contribution to journalArticle

elastodynamics
Elastodynamics
Complex Geometry
Duality
Band Gap

On the Hydrodynamic Stability of a Lennard-Jones Molecular Fluid

Raghavan, B. V. & Starzewski, M. O., Jan 1 2019, In : Journal of Statistical Physics.

Research output: Contribution to journalArticle

Hydrodynamic Stability
flow stability
Lennard-Jones
Reynolds number
Continuum

Optimizing I/O performance of HPC applications with autotuning

Behzad, B., Byna, S., Prabhat & Snir, M., Mar 2019, In : ACM Transactions on Parallel Computing. 5, 4, 15.

Research output: Contribution to journalArticle

Auto-tuning
High Performance
Computing
Middleware
Hardware

Origins and Control of Optical Absorption in a Nondilute Oxide Solid Solution: Sr(Ti,Fe)O 3- x Perovskite Case Study

Perry, N. H., Kim, N., Ertekin, E. & Tuller, H. L., Feb 12 2019, In : Chemistry of Materials. 31, 3, p. 1030-1041 12 p.

Research output: Contribution to journalArticle

Perovskite
Oxides
Light absorption
Solid solutions
Valence bands

Oxpecker (Buphagus erythrorhynchus, Buphagus africanus) and tick abundances in acaricide-treated livestock areas

Welsh, E. C., Keesing, F. & Allan, B. F., Mar 2019, In : African Journal of Ecology. 57, 1, p. 155-159 5 p.

Research output: Contribution to journalArticle

acaricide
Giraffa camelopardalis
mutualism
tick
acaricides

Parallelized finite element analysis of knitted textile mechanical behavior

Liu, D., Koric, S. & Kontsos, A., Apr 1 2019, In : Journal of Engineering Materials and Technology, Transactions of the ASME. 141, 2, 021008.

Research output: Contribution to journalArticle

textiles
Textiles
Computational efficiency
Finite element method
yarns

Parsl: Pervasive parallel programming in Python

Babuji, Y., Woodard, A., Li, Z., Katz, D. S., Clifford, B., Kumar, R., Lacinski, L., Chard, R., Wozniak, J. M., Foster, I., Wilde, M. & Chard, K., Jun 17 2019, HPDC 2019- Proceedings of the 28th International Symposium on High-Performance Parallel and Distributed Computing. Association for Computing Machinery, Inc, p. 25-36 12 p. (HPDC 2019- Proceedings of the 28th International Symposium on High-Performance Parallel and Distributed Computing).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access
Parallel programming
Machine oriented languages
Cosmology
Supercomputers
Materials science

Parsl: Scalable parallel scripting in python

Babuji, Y., Chard, K., Foster, I., Katz, D. S., Wilde, M., Woodard, A. & Wozniak, J., Jan 1 2019, In : CEUR Workshop Proceedings. 2357

Research output: Contribution to journalConference article

pricing
driver
demand
service provider
Costs

Performance of Al–Mn Transition-Edge Sensor Bolometers in SPT-3G

Anderson, A. J., Ade, P. A. R., Ahmed, Z., Avva, J. S., Barry, P. S., Thakur, R. B., Bender, A. N., Benson, B. A., Bryant, L., Byrum, K., Carlstrom, J. E., Carter, F. W., Cecil, T. W., Chang, C. L., Cho, H. M., Cliche, J. F., Cukierman, A., de Haan, T., Denison, E. V., Ding, J. & 69 others, Dobbs, M. A., Dutcher, D., Everett, W., Ferguson, K. R., Foster, A., Fu, J., Gallicchio, J., Gambrel, A. E., Gardner, R. W., Gilbert, A., Groh, J. C., Guns, S. T., Guyser, R., Halverson, N. W., Harke-Hosemann, A. H., Harrington, N. L., Henning, J. W., Hilton, G. C., Holzapfel, W. L., Howe, D., Huang, N., Irwin, K. D., Jeong, O. B., Jonas, M., Jones, A., Khaire, T. S., Kofman, A. M., Korman, M., Kubik, D. L., Kuhlmann, S., Kuo, C. L., Lee, A. T., Leitch, E. M., Lowitz, A. E., Meyer, S. S., Michalik, D., Montgomery, J., Nadolski, A., Natoli, T., Nguyen, H., Noble, G. I., Novosad, V., Padin, S., Pan, Z., Paschos, P., Pearson, J., Posada, C. M., Quan, W., Rahlin, A., Riebel, D., Ruhl, J. E., Sayre, J. T., Shirokoff, E., Smecher, G., Sobrin, J. A., Stark, A. A., Stephen, J., Story, K. T., Suzuki, A., Thompson, K. L., Tucker, C., Vale, L. R., Vanderlinde, K., Vieira, J. D., Wang, G., Whitehorn, N., Yefremenko, V., Yoon, K. W. & Young, M. R., Jan 1 2019, (Accepted/In press) In : Journal of Low Temperature Physics.

Research output: Contribution to journalArticle

Bolometers
bolometers
wafers
Detectors
Systematic errors

Performance of laser-based electronic devices for structural analysis of Amazonian terra-firme forests

Pereira, I. S., do Nascimento, H. E. M., Vicari, M. B., Disney, M., DeLucia, E. H., Domingues, T., Kruijt, B., Lapola, D., Meir, P., Norby, R. J., Ometto, J. P. H. B., Quesada, C. A., Rammig, A. & Hofhansl, F., Mar 1 2019, In : Remote Sensing. 11, 5, 510.

Research output: Contribution to journalArticle

Open Access
structural analysis
laser
aboveground biomass
biomass
vegetation

Performance of top-quark and W -boson tagging with ATLAS in Run 2 of the LHC

Atlas Collaboration, May 1 2019, In : European Physical Journal C. 79, 5, 375.

Research output: Contribution to journalArticle

Open Access
Bosons
marking
bosons
quarks
Colliding beam accelerators

Periodic Earned Income Tax Credit (EITC) Payment, Financial Stress and Wellbeing: A Longitudinal Study

Kramer, K., Andrade, F. C. D., Greenlee, A. J., Mendenhall, R., Bellisle, D. & Lemons Blanks, R., Sep 15 2019, In : Journal of Family and Economic Issues. 40, 3, p. 511-523 13 p.

Research output: Contribution to journalArticle

Income Tax
Longitudinal Studies
Aptitude
Food Supply
Emergencies

Personal embodiment, social enactment: Collaborative learning with body technology

Fields, D. A., Lee, V. R., Litts, B. K., Mortensen, C. K., Ching, C. C., Danish, J. A., Humburg, M., Davis, B., Tu, X., Lui, D., Shaw, M., Jayathirtha, G., Kafai, Y., Lindberg, L., Lindgren, R., Planey, J., Morphew, J., Taylor, K. H., Bell, A., Riesland, E. & 5 others, Hays, M., Silvis, D., Dubovi, I., Hall, R. & Enyedy, N., Jan 1 2019, A Wide Lens: Combining Embodied, Enactive, Extended, and Embedded Learning in Collaborative Settings - 13th International Conference on Computer Supported Collaborative Learning, CSCL 2019 - Conference Proceedings. Lund, K., Niccolai, G. P., Lavoue, E., Hmelo-Silver, C., Gweon, G. & Baker, M. (eds.). International Society of the Learning Sciences (ISLS), p. 798-805 8 p. (Computer-Supported Collaborative Learning Conference, CSCL; vol. 2).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

learning
technical development
epistemology
research method
experience

Pharmacogenomics-Driven Prediction of Antidepressant Treatment Outcomes: A Machine-Learning Approach With Multi-trial Replication

Athreya, A. P., Neavin, D., Carrillo-Roa, T., Skime, M., Biernacka, J., Frye, M. A., Rush, A. J., Wang, L., Binder, E. B., Iyer, R. K., Weinshilboum, R. M. & Bobo, W. V., Oct 1 2019, In : Clinical Pharmacology and Therapeutics. 106, 4, p. 855-865 11 p.

Research output: Contribution to journalArticle

Pharmacogenetics
Serotonin Uptake Inhibitors
Antidepressive Agents
Major Depressive Disorder
Citalopram
Planning
planning
optimization model
service provider
customer

Plant and soil microfaunal biodiversity across the borders between arable and forest ecosystems in a Mediterranean landscape

Jackson, L. E., Bowles, T. M., Ferris, H., Margenot, A. J., Hollander, A., Garcia-Palacios, P., Daufresne, T. & Sánchez-Moreno, S., Apr 2019, In : Applied Soil Ecology. 136, p. 122-138 17 p.

Research output: Contribution to journalArticle

Biodiversity
forest ecosystems
forest ecosystem
Ecosystem
nematode

Plant Networks as Traits and Hypotheses: Moving Beyond Description

Marshall-Colon, A. & Kliebenstein, D. J., Sep 2019, In : Trends in Plant Science. 24, 9, p. 840-852 13 p.

Research output: Contribution to journalReview article

Biological Sciences
organisms
phenotype
gene interaction
linkage (genetics)

Point Process Estimation with Mirror Prox Algorithms

He, N., Harchaoui, Z., Wang, Y. & Song, L., Jan 1 2019, (Accepted/In press) In : Applied Mathematics and Optimization.

Research output: Contribution to journalArticle

Point Process
Mirror
Mirrors
Process Model
Saddle Point Problems

polyRAD: Genotype calling with uncertainty from sequencing data in polyploids and diploids

Clark, L. V., Lipka, A. E. & Sacks, E. J., Mar 1 2019, In : G3: Genes, Genomes, Genetics. 9, 3, p. 663-673 11 p.

Research output: Contribution to journalArticle

Open Access
Polyploidy
Diploidy
Uncertainty
Genotype
Population

Possible worlds explorer: Datalog and answer set programming for the rest of us

Gupta, S., Cheng, Y. Y. & Ludaescher, B., Jan 1 2019, In : CEUR Workshop Proceedings. 2368, p. 44-55 12 p.

Research output: Contribution to journalConference article

Computer systems programming
Time series
Visualization
Atoms

Potential effects of blood meal host on bacterial community composition in Ixodes scapularis nymphs

Landesman, W. J., Mulder, K., Allan, B. F., Bashor, L. A., Keesing, F., LoGiudice, K. & Ostfeld, R. S., Apr 2019, In : Ticks and Tick-borne Diseases. 10, 3, p. 523-527 5 p.

Research output: Contribution to journalArticle

Nymph
Ixodes
Ixodes scapularis
Microbiota
blood meal

Precision immunoprofiling to reveal diagnostic signatures for latent tuberculosis infection and reactivation risk stratification

Robison, H. M., Escalante, P., Valera, E., Erskine, C. L., Auvil, L., Sasieta, H. C., Bushell, C., Welge, M. & Bailey, R. C., Jan 1 2019, In : Integrative biology : quantitative biosciences from nano to macro. 11, 1, p. 16-25 10 p.

Research output: Contribution to journalArticle

Latent Tuberculosis
Biomarkers
Blood
Cytokines
Sensor arrays

Predicting Short-term MCI-to-AD Progression Using Imaging, CSF, Genetic Factors, Cognitive Resilience, and Demographics

For the Alzheimer’s Disease Neuroimaging Initiative & Iyer, R. K., Dec 1 2019, In : Scientific reports. 9, 1, 2235.

Research output: Contribution to journalArticle

Open Access
Disease Progression
Alzheimer Disease
Demography
Complement C1
Prodromal Symptoms

Predicting the difficulty of automatic item generators on exams from their difficulty on homeworks

Chen, B., West, M. & Zilles, C., Jun 24 2019, Proceedings of the 6th 2019 ACM Conference on Learning at Scale, L@S 2019. Association for Computing Machinery, Inc, (Proceedings of the 6th 2019 ACM Conference on Learning at Scale, L@S 2019).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access
homework
Students
mechanical engineering
student
Mechanical engineering

Predicting the direct and indirect impacts of climate change on malaria in coastal Kenya

Le, P. V. V., Kumar, P., Ruiz, M. O., Mbogo, C. & Muturi, E. J., Feb 2019, In : PloS one. 14, 2, e0211258.

Research output: Contribution to journalArticle

Open Access
Climate Change
Kenya
Climate change
malaria
Malaria

Predicting tree diameter using allometry described by non-parametric locally-estimated copulas from tree dimensions derived from airborne laser scanning

Xu, Q., Li, B., Maltamo, M., Tokola, T. & Hou, Z., Feb 28 2019, In : Forest Ecology and Management. 434, p. 205-212 8 p.

Research output: Contribution to journalArticle

allometry
tree and stand measurements
lasers
laser
least squares

Prediction and optimization of mechanical properties of composites using convolutional neural networks

Abueidda, D. W., Almasri, M., Ammourah, R., Ravaioli, U., Jasiuk, I. M. & Sobh, N. A., Nov 1 2019, In : Composite Structures. 227, 111264.

Research output: Contribution to journalArticle

Genetic algorithms
Neural networks
Mechanical properties
Composite materials
Toughness
Excitation energy
Dimers
atomic energy levels
spinel
dimers

Preface

Xu, J. J., Zhu, B., Liu, X., Shaw, M. J-P., Zhang, H. & Fan, M., Jan 1 2019, In : Lecture Notes in Business Information Processing. 357

Research output: Contribution to journalEditorial

Producing a BOSS CMASS sample with des imaging

Lee, S., Huff, E. M., Ross, A. J., Choi, A., Hirata, C., Honscheid, K., MacCrann, N., Troxel, M. A., Davis, C., Eifler, T. F., Cawthon, R., Elvin-Poole, J., Annis, J., Avila, S., Bertin, E., Brooks, D., Carnero Rosell, A., Carrasco Kind, M., Carretero, J., Da Costa, L. N. & 40 others, De Vicente, J., Desai, S., Flaugher, B., Fosalba, P., García-Bellido, J., Gaztanaga, E., Gerdes, D. W., Gruen, D., Gruendl, R. A., Gschwend, J., Gutierrez, G., Hollowood, D. L., James, D. J., Jeltema, T., Kuehn, K., Lima, M., Maia, M. A. G., Marshall, J. L., Martini, P., Melchior, P., Menanteau, F., Miller, C. J., Miquel, R., Ogando, R. L. C., Palmese, A., Plazas, A. A., Sanchez, E., Scarpine, V., Schubnell, M., Serrano, S., Sevilla-Noarbe, I., Smith, M., Soares-Santos, M., Sobreira, F., Suchyta, E., Swanson, M. E. C., Tarle, G., Thomas, D., Weller, J. & Zuntz, J., Jan 1 2019, In : Monthly Notices of the Royal Astronomical Society. 489, 2, p. 2887-2906 20 p.

Research output: Contribution to journalArticle

galaxies
footprint
footprints
caps
equators

Properties of g →b b at small opening angles in pp collisions with the ATLAS detector at √s=13 TeV

(ATLAS Collaboration), Mar 1 2019, In : Physical Review D. 99, 5, 052004.

Research output: Contribution to journalArticle

Open Access
collisions
detectors
quarks
fragmentation
predictions

Properties of jet fragmentation using charged particles measured with the ATLAS detector in pp collisions at s =13 TeV

(ATLAS Collaboration), Sep 19 2019, In : Physical Review D. 100, 5, 052011.

Research output: Contribution to journalArticle

Open Access
fragmentation
charged particles
collisions
detectors
quarks

Properties of the Binary Neutron Star Merger GW170817

LIGO Scientific Collaboration and Virgo Collaboration, Jan 2 2019, In : Physical Review X. 9, 1, 011001.

Research output: Contribution to journalArticle

Open Access
binary stars
neutron stars
gravitational waves
LIGO (observatory)
sky
public transportation
Real time control
transportation system
Systems analysis
Planning

Publisher Correction: Combining Biomarkers with EMR Data to Identify Patients in Different Phases of Sepsis (Scientific Reports, (2017), 7, 1, (10800), 10.1038/s41598-017-09766-1)

Taneja, I., Reddy, B., Damhorst, G., Zhao, S. D., Hassan, U., Price, Z., Jensen, T., Ghonge, T., Patel, M., Wachspress, S., Winter, J., Rappleye, M., Smith, G., Healey, R., Ajmal, M., Khan, M., Patel, J., Rawal, H., Sarwar, R., Soni, S. & 6 others, Anwaruddin, S., Davis, B., Kumar, J., White, K., Bashir, R. & Zhu, R., Dec 1 2019, In : Scientific reports. 9, 1, 17419.

Research output: Contribution to journalComment/debate

Open Access
Sepsis
Biomarkers

PUG: a framework and practical implementation for why and why-not provenance

Lee, S., Ludaescher, B. & Glavic, B., Feb 1 2019, In : VLDB Journal. 28, 1, p. 47-71 25 p.

Research output: Contribution to journalArticle

Syntactics
Factorization

PUMA: A Programmable Ultra-efficient Memristor-based Accelerator for Machine Learning Inference

Ankit, A., El Hajj, I., Rahul Chalamalasetti, S., Ndu, G., Foltin, M., Williams, R. S., Faraboschi, P., Hwu, W. M., Paul Strachan, J., Roy, K. & Milojicic, D. S., Apr 4 2019, ASPLOS 2019 - 24th International Conference on Architectural Support for Programming Languages and Operating Systems. Association for Computing Machinery, p. 715-731 17 p. (International Conference on Architectural Support for Programming Languages and Operating Systems - ASPLOS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access
Memristors
Particle accelerators
Learning systems
Image recognition
Energy efficiency

Pushing the frontiers of modeling excited electronic states and dynamics to accelerate materials engineering and design

Kang, K., Kononov, A., Lee, C. W., Leveillee, J. A., Shapera, E. P., Zhang, X. & Schleife, A., Apr 1 2019, In : Computational Materials Science. 160, p. 207-216 10 p.

Research output: Contribution to journalArticle

pushing
Electronic states
Time-dependent Density Functional Theory
Accelerate
Electronics

Quantifying the Impact of Memory Errors in Deep Learning

Zhang, Z., Huang, L., Huang, R., Xu, W. & Katz, D. S., Sep 2019, Proceedings - 2019 IEEE International Conference on Cluster Computing, CLUSTER 2019. Institute of Electrical and Electronics Engineers Inc., 8890989. (Proceedings - IEEE International Conference on Cluster Computing, ICCC; vol. 2019-September).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Data storage equipment
Error correction
Random access storage
Deep learning
Fault tolerance
voter
trend
User interfaces
Websites
Gold

Race to Exascale

Dongarra, J., Gottlieb, S. & Kramer, W. T. C., Jan 1 2019, In : Computing in Science and Engineering. 21, 1, p. 4-5 2 p., 8661800.

Research output: Contribution to journalEditorial

Racial Microaggressions and Sense of Belonging at a Historically White University

Lewis, J. A., Mendenhall, R., Ojiemwen, A., Thomas, M., Riopelle, C., Harwood, S. A. & Browne Huntt, M., Jan 1 2019, In : American Behavioral Scientist.

Research output: Contribution to journalArticle

Students
student
Asian Americans
African Americans
Color

Rapid and Accurate Determination of Nanopore Ionic Current Using a Steric Exclusion Model

Wilson, J., Sarthak, K., Si, W., Gao, L. & Aksimentiev, A., Mar 22 2019, In : ACS Sensors. 4, 3, p. 634-644 11 p.

Research output: Contribution to journalArticle

Nanopores
exclusion
atomic structure
amino acids
solid state

Real-time intraoperative diagnosis by deep neural network driven multiphoton virtual histology

You, S., Sun, Y., Yang, L., Park, J., Tu, H., Marjanovic, M., Sinha, S. & Boppart, S. A., Dec 17 2019, In : npj Precision Oncology. 3, 1, 33.

Research output: Contribution to journalArticle

Open Access
Histology
Area Under Curve
Neoplasms
Learning
Technology
Open Access

Recommendations for performance optimizations when using GATK3.8 and GATK4

Heldenbrand, J. R., Baheti, S., Bockol, M. A., Drucker, T. M., Hart, S. N., Hudson, M. E., Iyer, R. K., Kalmbach, M. T., Kendig, K. I., Klee, E. W., Mattson, N. R., Wieben, E. D., Wiepert, M., Wildman, D. E. & Mainzer, L. S., Nov 8 2019, In : BMC bioinformatics. 20, 1, 557.

Research output: Contribution to journalArticle

Open Access
Performance Optimization
Recommendations
Genes
Cost effectiveness
Electric sparks