Research Output 1970 2020

Article

Age and diet affect gene expression profiles in canine liver tissue

Kil, D. Y., Boler, B. M. V., Apanavicius, C. J., Schook, L. B. & Swanson, K. S., Nov 17 2010, In : PloS one. 5, 10, e13319.

Research output: Contribution to journalArticle

Nutrition
Transcriptome
Gene expression
Liver
Canidae
newspaper
news
experiment
evidence
Experiments

A gene network engineering platform for lactic acid bacteria

Kong, W., Kapuganti, V. S. & Lu, T., Oct 9 2015, In : Nucleic acids research. 44, 4, e37.

Research output: Contribution to journalArticle

Gene Regulatory Networks
Nisin
Lactic Acid
Synthetic Biology
Bacteria
Design of experiments
Ice
Remote sensing
transect
Testing

A general framework of persistence strategies for biological systems helps explain domains of life

Yafremava, L. S., Wielgos, M., Thomas, S., Nasir, A., Wang, M., Mittenthal, J. E. & Caetano-Anollés, G., Apr 19 2013, In : Frontiers in Genetics. 4, FEB, Article 16.

Research output: Contribution to journalArticle

Archaea
Optic Disk
Eukaryota
Automatic Data Processing
Reproduction

A general interpolation strategy for algebraic multigrid using energy minimization

Olson, L. N., Schroder, J. B. & Tuminaro, R. S., Jun 1 2011, In : SIAM Journal on Scientific Computing. 33, 2, p. 966-991 26 p.

Research output: Contribution to journalArticle

Algebraic multigrid
Energy Minimization
Coarsening
Linear systems
Interpolation
Reconstruction (structural)
Pavements
Patient rehabilitation
rehabilitation
budget

A general model of demand-responsive transportation services: From taxi to ridesharing to dial-a-ride

Daganzo, C. F. & Ouyang, Y., Aug 2019, In : Transportation Research Part B: Methodological. 126, p. 213-224 12 p.

Research output: Contribution to journalArticle

demand
Industry
Genetic algorithms
Scheduling
Simulated annealing
Traveling salesman problem
Tabu search

A genetic porcine model of cancer

Schook, L. B., Collares, T. V., Hu, W., Liang, Y., Rodrigues, F. M., Rund, L. A., Schachtschneider, K. M., Seixas, F. K., Singh, K., Wells, K. D., Walters, E. M., Prather, R. S. & Counter, C. M., Jul 1 2015, In : PloS one. 10, 7, 0128864.

Research output: Contribution to journalArticle

Genetic Models
Tumors
Animals
Swine
swine

A genomic analysis of the archaeal system Ignicoccus hospitalis-Nanoarchaeum equitans

Podar, M., Anderson, I., Makarova, K. S., Elkins, J. G., Ivanova, N., Wall, M. A., Lykidis, A., Mavromatis, K., Sun, H., Hudson, M., Chen, W., Deciu, C., Hutchison, D., Eads, J. R., Anderson, A., Fernandes, F., Szeto, E., Lapidus, A., Kyrpides, N. C., Saier, M. H. & 7 others, Richardson, P. M., Rachel, R., Huber, H., Eisen, J. A., Koonin, E. V., Keller, M. & Stetter, K. O., Nov 10 2008, In : Genome biology. 9, 11, R158.

Research output: Contribution to journalArticle

Nanoarchaeota
Desulfurococcaceae
Systems Analysis
genomics
genome
Tibia
Bone and Bones
Bone Density
Sprague Dawley Rats
Tomography

Aggregate production planning for a continuous reconfigurable manufacturing process

Jain, A. & Palekar, U. S., May 1 2005, In : Computers and Operations Research. 32, 5, p. 1213-1236 24 p.

Research output: Contribution to journalArticle

Production Planning
Manufacturing
Planning
Configuration
Heuristics

A giant radio halo in a low-mass SZ-selected galaxy cluster: ACT-CL J0256.5+0006

Knowles, K., Intema, H. T., Baker, A. J., Bharadwaj, V., Bond, J. R., Cress, C., Gupta, N., Hajian, A., Hilton, M., Hincks, A. D., Hlozek, R., Hughes, J. P., Lindner, R. R., Marriage, T. A., Menanteau, F., Moodley, K., Niemack, M. D., Reese, E. D., Sievers, J., Sifón, C. & 2 others, Srianand, R. & Wollack, E. J., Jan 1 2016, In : Monthly Notices of the Royal Astronomical Society. 459, 4, p. 4240-4258 19 p.

Research output: Contribution to journalArticle

halos
radio
galaxies
merger
scaling

Agile research

Twidale, M. B. & Hansen, P., Jan 1 2019, In : First Monday. 24, 1, 5.

Research output: Contribution to journalArticle

software development
Software engineering
research method
criticism
learning
MISR (radiometry)
MISR
spectroradiometers
MODIS (radiometry)
moderate resolution imaging spectroradiometer

A globally aggregated reconstruction of cycles of carbon and its isotopes

Jain, A. K., Kheshgi, H. S. & Wuebbles, D. J., Sep 1996, In : Tellus, Series B: Chemical and Physical Meteorology. 48, 4, p. 583-600 18 p.

Research output: Contribution to journalArticle

isotope
carbon
carbon cycle
mixed layer
ocean

A global view of one-dimensional solar radiative transfer through oceanic water clouds

Di Girolamo, L., Liang, L. & Platnick, S., Sep 1 2010, In : Geophysical Research Letters. 37, 18, L18809.

Research output: Contribution to journalArticle

cloud water
radiative transfer
water
stratiform cloud
environmental modeling

AGN environments in the sloan digital sky survey I. Dependence on type, redshift, and luminosity

Strand, N. E., Brunner, R. J. & Myers, A. D., Nov 20 2008, In : Astrophysical Journal. 688, 1, p. 180-189 10 p.

Research output: Contribution to journalArticle

active galactic nuclei
quasars
luminosity
galaxies
merger

A gradient-based shape optimization scheme using an interface-enriched generalized FEM

Najafi, A. R., Safdari, M., Tortorelli, D. A. & Geubelle, P. H., Nov 1 2015, In : Computer Methods in Applied Mechanics and Engineering. 296, p. 1-17 17 p.

Research output: Contribution to journalArticle

shape optimization
Shape optimization
Interfaces (computer)
finite element method
Finite element method

A graphical user interface for numerical modeling of acclimation responses of vegetation to climate change

Le, P. V. V., Kumar, P., Drewry, D. T. & Quijano, J. C., Dec 1 2012, In : Computers and Geosciences. 49, p. 91-101 11 p.

Research output: Contribution to journalArticle

Graphical user interfaces
acclimation
Climate change
climate change
vegetation

A gravitational-wave standard siren measurement of the Hubble constant

Las Cumbres Observatory Collaboration, VINRO UGE Collaboration, MASTER Collaboration, LIGO Scientific Collaboration, Virgo Collaboration, 1M2H Collaboration, Dark Energy Camera GW-EM Collaboration, DES Collaboration, DLT40 Collaboration, Allen, G. D., Kemball, A. J., Ricker, P. M., Seidel, H. E. & Kind, M. C., Nov 2 2017, In : Nature. 551, 7678, p. 85-98 14 p.

Research output: Contribution to journalArticle

sirens
Hubble constant
gravitational waves
sky
universe

Agreeing to disagree: Reconciling conflicting taxonomic views using a logic-based approach

Cheng, Y. Y., Franz, N., Schneider, J., Yu, S., Rodenhausen, T. & Ludäscher, B., Jan 1 2017, In : Proceedings of the Association for Information Science and Technology. 54, 1, p. 46-56 11 p.

Research output: Contribution to journalArticle

Taxonomies
logic
taxonomy
Interoperability
Semantics

Agricultural water productivity assessment for the Yellow River Basin

Cai, X., Yang, Y. C. E., Ringler, C., Zhao, J. & You, L., May 30 2011, In : Agricultural Water Management. 98, 8, p. 1297-1306 10 p.

Research output: Contribution to journalArticle

Yellow River
river basin
productivity
water
crop yield

Agricultural Weed Research: A Critique and Two Proposals

Ward, S. M., Cousens, R. D., Bagavathiannan, M. V., Barney, J. N., Beckie, H. J., Busi, R., Davis, A., Dukes, J. S., Forcella, F., Freckleton, R. P., Gallandt, E. R., Hall, L. M., Jasieniuk, M., Lawton-Rauh, A., Lehnhoff, E. A., Liebman, M., Maxwell, B. D., Mesgaran, M. B., Murray, J. V., Neve, P. & 4 others, Nuñez, M. A., Pauchard, A., Queenborough, S. A. & Webber, B. L., Dec 1 2014, In : Weed Science. 62, 4, p. 672-678 7 p.

Research output: Contribution to journalArticle

weeds
weed biology
weed science
descriptive studies
weed control

Agronomic and stream nitrate load responses to incentives for bioenergy crop cultivation and reductions of carbon emissions and fertilizer use

Ng, T. L., Wayland Eheart, J., Cai, X., Braden, J. B. & Czapar, G. F., 2014, In : Journal of Water Resources Planning and Management. 140, 1, p. 112-120 9 p.

Research output: Contribution to journalArticle

bioenergy
carbon emission
Fertilizers
Crops
Nitrates

A hardware track finder for the ATLAS trigger

Annovi, A., Beretta, M., Brubaker, E., Cavasinni, V., Cortes Gonzalez, A., Crescioli, F., DeBerg, H., Dell'Orso, M., Dunford, M., Franklin, M., Giannetti, P., Kapliy, A., Kim, Y. K., Laurell, P., Liss, T., McCarn, A., Mills, C., Neubauer, M., Punzi, G., Sarri, F. & 5 others, Shochet, M., Vivarelli, I., Volpi, G., Yorita, K. & Zotov, S., Jun 1 2008, In : Nuovo Cimento della Societa Italiana di Fisica B. 123, 6-7, p. 981-983 3 p.

Research output: Contribution to journalArticle

hardware
actuators
flexibility
detectors

A heterogeneous modeling method for porous media flows

Hlepas, G., Truster, T. & Masud, A., Jul 10 2014, In : International Journal for Numerical Methods in Fluids. 75, 7, p. 487-518 32 p.

Research output: Contribution to journalArticle

Porous Media Flow
Modeling Method
Porous materials
Overlapping
Domain Decomposition
Hierarchical systems
Hierarchical Systems
Multiscale Modeling
Systems of Partial Differential Equations
Partial differential equations

A Heuristic Approach to the Railroad Track Maintenance Scheduling Problem

Peng, F., Kang, S., Li, X., Ouyang, Y., Somani, K. & Acharya, D., Feb 1 2011, In : Computer-Aided Civil and Infrastructure Engineering. 26, 2, p. 129-145 17 p.

Research output: Contribution to journalArticle

Railroad tracks
Scheduling
Railroads
Rails
Costs

A hierarchical Bayesian approach to the classification of C3 and C4 grass pollen based on SPIRAL δ13C data

Urban, M. A., Nelson, D. M., Kelly, R., Ibrahim, T., Dietze, M., Pearson, A. & Hu, F. S., Nov 15 2013, In : Geochimica et Cosmochimica Acta. 121, p. 168-176 9 p.

Research output: Contribution to journalArticle

Isotopes
pollen
grass
isotope
Sediments

A hierarchical multiscale framework for problems with multiscale source terms

Masud, A. & Franca, L. P., Jun 1 2008, In : Computer Methods in Applied Mechanics and Engineering. 197, 33-40, p. 2692-2700 9 p.

Research output: Contribution to journalArticle

Decomposition
decomposition
decoupling
embedding

A hierarchical quality of service control architecture for configurable multimedia applications

Li, B., Kalter, W. & Nahrstedt, K., Dec 1 2000, In : Journal of High Speed Networks. 9, 3-4, p. 153-174 22 p.

Research output: Contribution to journalArticle

Quality of service
Knobs
Tuning
Middleware
Resource allocation

A high density recombination map of the pig reveals a correlation between sex-specific recombination and GC content

Tortereau, F., Servin, B., Frantz, L., Megens, H. J., Milan, D., Rohrer, G., Wiedmann, R., Beever, J., Archibald, A. L., Schook, L. B. & Groenen, M. A. M., Nov 15 2012, In : BMC genomics. 13, 1, 586.

Research output: Contribution to journalArticle

Base Composition
Genetic Recombination
Swine
Chromosomes
Pedigree

A high fraction of double-peaked narrow emission lines in powerful active galactic nuclei

Lyu, Y. & Liu, X., Jan 1 2016, In : Monthly Notices of the Royal Astronomical Society. 463, 1, p. 1-14 14 p.

Research output: Contribution to journalArticle

active galactic nuclei
outflow
luminosity
oscillation
ionized gases

A high-performance and in-season classification system of field-level crop types using time-series Landsat data and a machine learning approach

Cai, Y., Guan, K., Peng, J., Wang, S., Seifert, C., Wardlow, B. & Li, Z., Jun 1 2018, In : Remote Sensing of Environment. 210, p. 35-47 13 p.

Research output: Contribution to journalArticle

artificial intelligence
Landsat
Crops
Learning systems
Time series

A high-resolution comparative map of porcine chromosome 4 (SSC4)

Ma, J. G., Chang, T. C., Yasue, H., Farmer, A. D., Crow, J. A., Eyer, K., Hiraiwa, H., Shimogiri, T., Meyers, S. N., Beever, J. E., Schook, L. B., Retzel, E. F., Beattie, C. W. & Liu, W. S., Aug 1 2011, In : Animal genetics. 42, 4, p. 440-444 5 p.

Research output: Contribution to journalArticle

Radiation Hybrid Mapping
Chromosomes, Human, Pair 4
Swine
chromosomes
swine

A high utility integrated map of the pig genome

Humphray, S. J., Scott, C. E., Clark, R., Marron, B., Bender, C., Camm, N., Davis, J., Jenks, A., Noon, A., Patel, M., Sehra, H., Yang, F., Rogatcheva, M. B., Milan, D., Chardon, P., Rohrer, G., Nonneman, D., de Jong, P., Meyers, S. N., Archibald, A. & 3 others, Beever, J. E., Schook, L. B. & Rogers, J., Jul 11 2007, In : Genome biology. 8, 7, R139.

Research output: Contribution to journalArticle

pig
Bacterial Artificial Chromosomes
Swine
genome
Genome

A Hin dIII polymorphism at the porcine bone, liver, kidney alkaline phosphatase ALPL locus

Shalhevet, D., Krull, D., Clamp, P., Feltes, R., Atac, E. & Schook, L. B., Apr 1993, In : Animal genetics. 24, 2, p. 140 1 p.

Research output: Contribution to journalArticle

Deoxyribonuclease HindIII
Nucleic Acid Hybridization
Pedigree
nucleic acid hybridization
polymorphism

A Holistic Framework to Assess Drought Preparedness

Cai, X., Shafiee-Jood, M., Ge, Y., Kokoszka, S. & Apurv, T., Jan 1 2018, In : World Scientific Series on Asia-Pacific Weather and Climate. 10, p. 177-191 15 p.

Research output: Contribution to journalArticle

drought
crisis management
natural hazard
limiting factor
environmental factor

A holistic paradigm for large scale schema matching

He, B. & Chang, K. C. C., Dec 2004, In : SIGMOD Record. 33, 4, p. 20-25 6 p.

Research output: Contribution to journalArticle

Semantics

A HOT BIG BANG THEORY: MAGNETIC FIELDS and the EARLY EVOLUTION of the PROTOLUNAR DISK

Gammie, C. F., Liao, W. T. & Ricker, P. M., Sep 1 2016, In : Astrophysical Journal. 828, 1, 58.

Research output: Contribution to journalArticle

magnetic field
magnetic fields
angular momentum
Moon
turbulent mixing

A hybrid ensemble learning approach to star-galaxy classification

Kim, E. J., Brunner, R. J. & Kind, M. C., Jul 24 2015, In : Monthly Notices of the Royal Astronomical Society. 453, 1, p. 507-521 15 p.

Research output: Contribution to journalArticle

learning
galaxies
stars
machine learning
education

A hybrid experimental/numerical approach to characterize interfacial adhesion in multilayer low-κ thin film specimens

Kitey, R., Sottos, N. R. & Geubelle, P. H., Oct 29 2010, In : Thin Solid Films. 519, 1, p. 337-344 8 p.

Research output: Contribution to journalArticle

Silicates
Helium
Carbon nitride
Multilayers
adhesion

A hybrid finite element-spectral boundary integral approach: Applications to dynamic rupture modeling in unbounded domains

Ma, X., Hajarolasvadi, S., Albertini, G., Kammer, D. S. & Elbanna, A. E., Jan 2019, In : International Journal for Numerical and Analytical Methods in Geomechanics. 43, 1, p. 317-338 22 p.

Research output: Contribution to journalArticle

Insulator Elements
boundary integral method
rupture
finite element method
Finite element method

A hybrid full-Lagrangian technique for the static and dynamic analysis of magnetostatic MEMS

De, S. K. & Aluru, N. R., Dec 1 2006, In : Journal of Micromechanics and Microengineering. 16, 12, p. 2646-2658 13 p., 018.

Research output: Contribution to journalArticle

Magnetostatics
Static analysis
Dynamic analysis
MEMS
Boundary integral equations

A hydrogel construct and fibrin-based glue approach to deliver therapeutics in a murine myocardial infarction model

Melhem, M., Jensen, T., Reinkensmeyer, L., Knapp, L., Flewellyn, J. & Schook, L., Jun 14 2015, In : Journal of Visualized Experiments. 2015, 100, e52562.

Research output: Contribution to journalArticle

Fibrin Tissue Adhesive
Glues
Hydrogel
Fibrin
Hydrogels

"Ain't I a Woman?": Perceived Gendered Racial Microaggressions Experienced by Black Women

Lewis, J. A., Mendenhall, R., Harwood, S. A. & Browne Huntt, M., Jul 1 2016, In : Counseling Psychologist. 44, 5, p. 758-780 23 p.

Research output: Contribution to journalArticle

Beauty
Focus Groups
Esthetics
Counseling
Communication

Air and soil temperature limitations on photosynthesis in Englemann spruce during summer.

Delucia, E. H. & Smith, W. K., Jan 1 1987, In : Canadian Journal of Forest Research. 17, 6, p. 527-533 7 p.

Research output: Contribution to journalArticle

soil temperature
Picea
air temperature
photosynthesis
night temperature

A join algorithm for combining AND parallel solutions in AND/OR parallel systems

Ramkumar, B. & Kale, L. V., Feb 1 1992, In : International Journal of Parallel Programming. 21, 1, p. 67-107 41 p.

Research output: Contribution to journalArticle

Prolog
Or-parallelism
Parallel Systems
Dependency Graph
Data Dependency