Research Output

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2019

Conjugated Barcoded Particles for Multiplexed Biomarker Quantification with a Microfluidic Biochip

Prakash, S., Nagarajan, M., Doyle, P., Bashir, R. & Hassan, U., Nov 2019, 2019 IEEE Healthcare Innovations and Point of Care Technologies, HI-POCT 2019. Institute of Electrical and Electronics Engineers Inc., p. 139-142 4 p. 8962846. (2019 IEEE Healthcare Innovations and Point of Care Technologies, HI-POCT 2019).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Spatiotemporal dynamics of molecular messaging in bacterial co-cultures studied by multimodal chemical imaging

Cao, T., Morales-Soto, N., Jia, J., Baig, N. F., Dunham, S. J. B., Ellis, J., Sweedler, J. V., Shrout, J. D. & Bohn, P. W., Jan 1 2019, Photonic Diagnosis and Treatment of Infections and Inflammatory Diseases II. Dai, T., Popp, J. & Wu, M. X. (eds.). SPIE, 108630A. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 10863).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2018

Mobile biosensing using the sensing capabilities of smartphone cameras

Cunningham, B. T., Long, K. D., Yu, H., Chen, W., Sun, F., Ornob, A., Ganguli, A., Lumetta, S. & Bashir, R., Jan 4 2018, 2017 IEEE MTT-S International Microwave Workshop Series on Advanced Materials and Processes for RF and THz Applications, IMWS-AMP 2017. Institute of Electrical and Electronics Engineers Inc., p. 1-3 3 p. (2017 IEEE MTT-S International Microwave Workshop Series on Advanced Materials and Processes for RF and THz Applications, IMWS-AMP 2017; vol. 2018-January).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Optical parametric amplification of gated confocal reflectance microscopy signals in scattering media

Sun, Y., Tu, H., You, S. & Boppart, S., Jan 1 2018, Frontiers in Optics, FIO 2018. OSA - The Optical Society, (Optics InfoBase Conference Papers; vol. Part F114-FIO 2018).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Structural OCT middle ear imaging correlated with functional wideband acoustic immittance measurements

Won, J., Monroy, G. L., Huang, P. C., Hill, M. C., Novak, M. A., Porter, R. G., Chaney, E., Barkalifa, R. & Boppart, S. A., Jan 1 2018, Clinical and Translational Biophotonics, TRANSLATIONAL 2018. OSA - The Optical Society, (Optics InfoBase Conference Papers; vol. Part F91-TRANSLATIONAL 2018).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Toward interstitial Magnetic hyperthermia dosimetry via magnetomotive optical coherence elastography

Huang, P. C., Spillman, D. R., Odintsov, B., Sobh, N. A. & Boppart, S. A., Jan 1 2018, Optical Tomography and Spectroscopy, OTS 2018. OSA - The Optical Society, (Optics InfoBase Conference Papers; vol. Part F90-OTS 2018).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2017

Adaptive multiphoton imaging by high peak-power coherent fiber supercontinuum

Tu, H. & Boppart, S. A., Jan 1 2017, International Conference on Photonics and Imaging in Biology and Medicine, PIBM 2017. OSA - The Optical Society, (Optics InfoBase Conference Papers; vol. Part F70-PIBM 2017).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Depth-resolved characterization of the in vivo tympanic membrane using nano-sensitive optical coherence tomography

Dsouza, R., Won, J., Monroy, G. L., Porter, R. G., Novak, M. A., Hill, M. C. & Boppart, S. A., Jan 1 2017, CLEO: Science and Innovations, CLEO_SI 2017. OSA - The Optical Society, (Optics InfoBase Conference Papers; vol. Part F41-CLEO_SI 2017).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Depth-Resolved characterization of the in vivo tympanic membrane using nano-Sensitive optical coherence tomography

Dsouza, R., Won, J., Monroy, G. L., Porter, R. G., Novak, M. A., Hill, M. C. & Boppart, S. A., Oct 25 2017, 2017 Conference on Lasers and Electro-Optics, CLEO 2017 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 1-2 2 p. (2017 Conference on Lasers and Electro-Optics, CLEO 2017 - Proceedings; vol. 2017-January).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

High-speed two-photon fluorescence lifetime imaging microscopy of NADH for label-free metabolic imaging

Bower, A. J., Li, J., Chaney, E. J., Marjanovic, M. & Boppart, S. A., Jan 1 2017, Optical Molecular Probes, Imaging and Drug Delivery, OMP 2017. OSA - The Optical Society, (Optics InfoBase Conference Papers; vol. Part F63-OMP 2017).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Microscale transport physics during atomic force microscopy mass spectrometry and improved sampling efficiency

Moon, H., Comi, T. J., Dunham, S. J. B., Kwon, B., Sweedler, J. V. & King, W. P., Jul 26 2017, TRANSDUCERS 2017 - 19th International Conference on Solid-State Sensors, Actuators and Microsystems. Institute of Electrical and Electronics Engineers Inc., p. 24-27 4 p. 7993978. (TRANSDUCERS 2017 - 19th International Conference on Solid-State Sensors, Actuators and Microsystems).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Multiplexed detection of infectious diseases with microfluidic loop-mediated isothermal amplification and a smartphone

Sun, F., Chen, W., Yu, H., Omob, A., Brisbin, R., Ganguli, A., Vemuri, V., Strzebonski, P., Cui, G., Allen, K. J., Desai, S. A., Lin, W., Nash, D. M., Hirschberg, D. L., Brooks, I., Bashir, R. & Cunningham, B. T., Dec 19 2017, 2017 IEEE Healthcare Innovations and Point of Care Technologies, HI-POCT 2017. Institute of Electrical and Electronics Engineers Inc., p. 241-244 4 p. (2017 IEEE Healthcare Innovations and Point of Care Technologies, HI-POCT 2017; vol. 2017-December).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Prediction of adenocarcinoma development using game theory

Athreya, A. P., Armstrong, D., Gundling, W., Wildman, D., Kalbarczyk, Z. T. & Iyer, R. K., Sep 13 2017, 2017 39th Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Smarter Technology for a Healthier World, EMBC 2017 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 1668-1671 4 p. 8037161. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Quantitative multimodal 3D characterization of cellular dynamics in wounded skin

Li, J., Bower, A. J., Chaney, E. J., Marjanovic, M. & Boppart, S. A., Jan 1 2017, Bio-Optics: Design and Application, BODA 2017. OSA - The Optical Society, (Optics InfoBase Conference Papers; vol. Part F62-BODA 2017).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Stain-free structural and molecular histopathology using programmable supercontinuum pulses

Boppart, S. A., Jan 1 2017, Novel Techniques in Microscopy, NTM 2017. OSA - The Optical Society, (Optics InfoBase Conference Papers; vol. Part F79-NTM 2017).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Wavefront measurement using computational adaptive optics OCT

South, F. A., Liu, Y. Z., Xu, Y., Bower, A. J., Carney, P. S. & Boppart, S. A., Jan 1 2017, Computational Optical Sensing and Imaging, COSI 2017. OSA - The Optical Society, (Optics InfoBase Conference Papers; vol. Part F46-COSI 2017).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2016

Computational adaptive optics of the human retina

South, F. A., Liu, Y. Z., Carney, P. S. & Boppart, S. A., Jan 1 2016, Ophthalmic Technologies XXVI. Ho, A., Manns, F. & Soderberg, P. G. (eds.). SPIE, 96931F. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 9693).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Filtering and unwrapping doppler optical coherence tomography velocity maps

Xu, Y., Darga, D., Smid, J., Zysk, A. M., Teh, D., Boppart, S. A. & Carney, P. S., Jul 18 2016, Computational Optical Sensing and Imaging, COSI 2016. OSA - The Optical Society, (Optics InfoBase Conference Papers).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

HIV-1 IIIB capture from whole blood on magnetic microparticles

Damhorst, G. L., Kooiman, J. M. & Bashir, R., Oct 13 2016, 2016 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2016. Institute of Electrical and Electronics Engineers Inc., p. 5785-5788 4 p. 7592042. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS; vol. 2016-October).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Intraoperative in vivo assessment of lymph nodes with optical coherence tomography

Marjanovic, M., Nolan, R. M., Erickson-Bhatt, S. J., Adie, S. G., Chaney, E. J., South, F. A., Monroy, G. L., Shemonski, N. D., Shelton, R. L., Bower, A. J., Simpson, D. G., Ray, P. S., Cradock, K. A., Liu, Z. G. & Boppart, S. A., Apr 18 2016, Clinical and Translational Biophotonics, Translational 2016. OSA - The Optical Society, (Optics InfoBase Conference Papers).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Intraoperative OCT for soft tissue sarcoma margin identification

Mesa, K. J., Selmic, L. E., Marjanovic, M., Chaney, E. J. & Boppart, S. A., Apr 18 2016, Optical Tomography and Spectroscopy, OTS 2016. OSA - The Optical Society, p. 3 1 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Label-free molecular imaging of bacterial communities of the opportunistic pathogen Pseudomonas aeruginosa

Baig, N., Polisetti, S., Morales-Soto, N., Dunham, S. J. B., Sweedler, J. V., Shrout, J. D. & Bohn, P. W., Jan 1 2016, Biosensing and Nanomedicine IX. Mohseni, H., Agahi, M. H. & Razeghi, M. (eds.). SPIE, 993004. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 9930).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

MicroRNA-34a and Impaired FGF19/21 Signaling in Obesity

Fu, T. & Kemper, J. K., Jan 1 2016, Klotho, 2016. Litwack, G. (ed.). Academic Press Inc., p. 175-196 22 p. (Vitamins and Hormones; vol. 101).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

SwordPlots: Exploring neuron behavior within dynamic communities of brain networks

Ma, C., Forbes, A. G., Llano, D. A., Berger-Wolf, T. & Kenyon, R. V., Jan 1 2016, Human Vision and Electronic Imaging 2016, HVEI 2016. Pappas, T. N., de Ridder, H. & Rogowitz, B. E. (eds.). Society for Imaging Science and Technology, p. 268-280 13 p. (Human Vision and Electronic Imaging 2016, HVEI 2016).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2015

3D quantitative phase imaging of neural networks using WDT

Kim, T., Liu, S. C., Iyer, R., Gillette, M. U. & Popescu, G., Jan 1 2015, Quantitative Phase Imaging. Park, Y. & Popescu, G. (eds.). SPIE, 93361V. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 9336).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

A computational approach to high-resolution imaging of the living human retina without hardware adaptive optics

Shemonski, N. D., Adie, S. G., Liu, Y. Z., South, F. A., Carney, P. S. & Boppart, S. A., Jan 1 2015, Ophthalmic Technologies XXV. Ho, A., Manns, F. & Soderberg, P. G. (eds.). SPIE, 930710. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 9307).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Automation of interferometric synthetic aperture microscopy

Xu, Y., Liu, Y. Z., Boppart, S. A. & Carney, P. S., Jan 1 2015, Proceedings of Frontiers in Optics 2015, FIO 2015. OSA - The Optical Society, (Proceedings of Frontiers in Optics 2015, FIO 2015).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Computational adaptive optics for broadband optical interferometric tomography of biological tissue

Boppart, S. A., Jan 1 2015, Adaptive Optics and Wavefront Control for Biological Systems. Kubby, J., Gigan, S. & Bifano, T. G. (eds.). SPIE, 933505. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 9335).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Computational adaptive optics for broadband optical interferometric tomography of biological tissue

S. A., B., 2015, Progress in Biomedical Optics and Imaging - Proceedings of SPIE. SPIE, Vol. 9335. 933505

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Computational adaptive optics for high-resolution imaging of the living human retina

Boppart, S. A., Jan 1 2015, Adaptive Optics: Analysis, Methods and Systems, AO 2015. Optical Society of America (OSA), 1 p. (Adaptive Optics: Analysis, Methods and Systems, AO 2015).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Computer modeling in neuroscience: From imperative to declarative programming: Maude modeling in neuroscience

Anastasio, T. J., Jan 1 2015, Logic, Rewriting and Concurrency - Essays Dedicated to Jose Meseguer on the Occasion of His 65th Birthday. Ölveczky, P. C., Talcott, C. & Martí-Oliet, N. (eds.). Springer-Verlag, p. 97-113 17 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9200).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Extracting full susceptibility tensor using modified optical coherence tomography

Xu, Y., South, F. A., Liu, Y. Z., Boppart, S. A. & Carney, P. S., Jan 1 2015, Proceedings of Frontiers in Optics 2015, FIO 2015. OSA - The Optical Society, (Proceedings of Frontiers in Optics 2015, FIO 2015).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Finding bugs in your ear: Clinical imaging of middle-ear infections and biofilms using OCT

Boppart, S. A., Aug 10 2015, 2015 Conference on Lasers and Electro-Optics, CLEO 2015. Institute of Electrical and Electronics Engineers Inc., 7182922. (Conference on Lasers and Electro-Optics Europe - Technical Digest; vol. 2015-August).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Finding bugs in your ear: Clinical imaging of middle-ear infections and biofilms using OCT

Boppart, S. A., May 4 2015, CLEO: Applications and Technology, CLEO-AT 2015. Optical Society of America (OSA), ATh3J.1. (CLEO: Applications and Technology, CLEO-AT 2015).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Optical coherence microscopy using hardware and computational adaptive optics

Liu, Y. Z., South, F. A., Pande, P., Shemonski, N. D., Carney, P. S. & Boppart, S. A., Jan 1 2015, Adaptive Optics: Analysis, Methods and Systems, AO 2015. Optical Society of America (OSA), 1 p. (Adaptive Optics: Analysis, Methods and Systems, AO 2015).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Superior neuronal outgrowth guidance and rate enhancement using silicon nitride self-rolled-up membranes

Froeter, P., Huang, Y., Cangellaris, O. V., Huang, W., Gillette, M. U., Williams, J. & Li, X., Aug 3 2015, 73rd Annual Device Research Conference, DRC 2015. Institute of Electrical and Electronics Engineers Inc., p. 93-94 2 p. 7175571. (Device Research Conference - Conference Digest, DRC; vol. 2015-August).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Tunable femtosecond Cherenkov fiber laser

Liu, X., Svane, A. S., Laegsgaard, J., Tu, H., Boppart, S. & Turchinovich, D., Jan 23 2015, Proceedings of 2014 IEEE 7th International Conference on Advanced Infocomm Technology, IEEE/ICAIT 2014. Li, H., Wu, Y. & Huang, Z. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 218-221 4 p. 7019556. (Proceedings of 2014 IEEE 7th International Conference on Advanced Infocomm Technology, IEEE/ICAIT 2014).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2014

Electrically-tunable multi-color ultrafast cherenkov fiber laser

Svane, A. S., Liu, X., Jesper Lægsgaard, L., Tu, H., Boppart A., S. A. & Turchinovich, D., Jan 1 2014, CLEO: Applications and Technology, CLEO_AT 2014. Optical Society of American (OSA), (Optics InfoBase Conference Papers).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Electrically-tunable multi-color ultrafast cherenkov fiber laser

Svane, A. S., Liu, X., Lægsgaard, J., Tu, H., Boppart, S. A. & Turchinovich, D., 2014, 2014 Conference on Lasers and Electro-Optics, CLEO 2014. Institute of Electrical and Electronics Engineers Inc., Vol. 2014-January. 6988336

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Evaluation of significance level assignment of database search programs using monte carlo permutation approach

Akhtar, M. N., Southey, B. R., Andrén, P. E., Sweedler, J. V. & Rodriguez-Zas, S. L., Jan 1 2014, Proceedings of the 6th International Conference on Bioinformatics and Computational Biology, BICOB 2014. International Society for Computers and Their Applications, p. 103-107 5 p. (Proceedings of the 6th International Conference on Bioinformatics and Computational Biology, BICOB 2014).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Filtering doppler oct improves unwrapping and extends range of microscopic fluid velocity measurement

Xu, Y., Darga, D., Smid, J., Zysk, A. M., Teh, D., Boppart, S. A. & Carney, P. S., Jul 21 2014, Frontiers in Optics, FiO 2016. OSA - The Optical Society, (Optics InfoBase Conference Papers).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Implementation and evaluation of Google Glass for visualizing real-time image and patient data in the primary care office

Monroy, G. L., Shemonski, N. D., Shelton, R. L., Nolan, R. M. & Boppart, S. A., 2014, Advanced Biomedical and Clinical Diagnostic and Surgical Guidance Systems XII. SPIE, Vol. 8935. 893514

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Intraoperative OCT for soft tissue sarcoma margin identification

Mesa, K. J., Selmic, L., Marjanovic, M., Chaney, E. J. & Boppart, S. A., Jul 21 2014, Cancer Imaging and Therapy, CANCER 2016. OSA - The Optical Society, (Optics InfoBase Conference Papers).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

In vivo intra-operative breast tumor margin detection using a portable OCT system with a handheld surgical imaging probe

Erickson-Bhatt, S. J., Nolan, R., Shemonski, N. D., Adie, S. G., Putney, J., Darga, D., McCormick, D. T., Cittadine, A., Marjanovic, M., Chaney, E. J., Monroy, G. L., South, F., Carney, P. S., Cradock, K. A., Liu, Z. G., Ray, P. S. & Boppart, S. A., Jan 1 2014, Advanced Biomedical and Clinical Diagnostic and Surgical Guidance Systems XII. SPIE, 89351C. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8935).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Multimodal multiphoton microscopy of carcinogenesis

Boppart, S. A., Jul 21 2014, Cancer Imaging and Therapy, CANCER 2016. OSA - The Optical Society, (Optics InfoBase Conference Papers).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Spectroscopic Raman analysis of tumor micro- And macroenvironments in human breast and rat mammary cancer

You, S., Tu, H., Zhao, Y., Liu, Y., Chaney, E. J., Marjanovic, M. & Boppart, S. A., Jul 21 2014, Cancer Imaging and Therapy, CANCER 2016. OSA - The Optical Society, (Optics InfoBase Conference Papers).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Understanding the impact of fractionation and dynamic exclusion on proteomics

Zavala, C., Nixon, S., Southey, B. R., Wu, C., Romanova, E. V., Sweedler, J. V. & Rodriguez-Zas, S. L., Jan 1 2014, Proceedings of the 6th International Conference on Bioinformatics and Computational Biology, BICOB 2014. International Society for Computers and Their Applications, p. 93-96 4 p. (Proceedings of the 6th International Conference on Bioinformatics and Computational Biology, BICOB 2014).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2013

3D fabrication of biological machines

Chan, V., Kong, H. J. & Bashir, R., Oct 31 2013, 2013 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2013. p. 314-317 4 p. 6609500. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

All-fiber femtosecond cherenkov laser at visible wavelengths

Liu, X., Lægsgaard, J., Møller, U., Tu, H., Boppart, S. A. & Turchinovich, D., Dec 1 2013, The European Conference on Lasers and Electro-Optics, CLEO_Europe 2013. (Optics InfoBase Conference Papers).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

All-fiber femtosecond cherenkov laser at visible wavelengths

Liu, X., Lægsgaard, J., Møller, U., Tu, H., Boppart, S. A. & Turchinovich, D., Dec 1 2013, International Quantum Electronics Conference, IQEC 2013. (Optics InfoBase Conference Papers).

Research output: Chapter in Book/Report/Conference proceedingConference contribution